FC878222

Overview
NameFC878222
Unique NameFC878222
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5701 contig Ccv1_Contig5701:1..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATC1_SCHPO (Calcium-transporting ATPase 1 OS=Schizosaccharomyces pombe GN=pmr1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.404e-11
Identity = 45/141 (31.91%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  307 LEADIKQGISS-HEVEQRRKRYGWNEITTE-KENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAV-VGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            LE D+  G+SS  E+ +R K +G N++  E +EN+ ++FL  F    L ++  A    +     ID  + I + ++  V VG+ QE ++   + +L   +     V+R G+   I A +LVPGD++I++ G+ VPAD R++
Sbjct:   17 LETDMYNGLSSLQEITRRNKVHGDNDLKVEDEENMVVQFLKQFVKDPLILLLFASSAISVTLGNIDDAISIALAIVIVVTVGFVQEYRSEQSLKALNNLVPHYCNVIRSGKTEHIVASKLVPGDLVILQIGDRVPADLRIV 157          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT2A3_RAT (Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Rattus norvegicus GN=Atp2a3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.834e-11
Identity = 49/145 (33.79%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  328 GISSHEVEQRRKRYGWNEITTEK-ENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFG-----------VIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQES--DIKARELVPGDIIIIEEGESVPADARLI 720
            G++  +V   R+RYG NE+ TE+ ++L+   +  F   ++ ++ LA L++  L  W + G           VI+ IL+ NA+VG +QE+ A   + +LK        V+R  ++    I+AR++VPGDI+ +  G+ VPAD RLI
Sbjct:   23 GLTLEQVTDARERYGPNELPTEEGKSLWELVVEQFEDLLVRILLLAALVSFVLA-WFEEGEETTTAFVEPLVIMLILVANAIVGVWQERNAESAIEALKEYEPEMGKVIRSDRKGVQRIRARDIVPGDIVEVAVGDKVPADLRLI 166          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT2A3_CHICK (Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Gallus gallus GN=ATP2A3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.834e-11
Identity = 49/145 (33.79%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  328 GISSHEVEQRRKRYGWNEITTE-KENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFG-----------VIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQES--DIKARELVPGDIIIIEEGESVPADARLI 720
            G+S  +V + R++YG NE+  E +++L+   L  F   ++ ++ +A  L+  L  W + G           VII IL+ NAVVG +QE+ A   + +LK        V+R  +     I+AR++VPGDI+ +  G+ VPAD R+I
Sbjct:   23 GLSPEQVRRNREKYGPNELPAEERKSLWELVLEQFEDLLVRILLMAAFLSFILA-WFEEGEESTTAFVEPIVIIMILIANAVVGVWQERNAESAIEALKEYEPEMGKVIRADRSGVQRIRARDIVPGDIVEVAVGDKVPADIRII 166          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT2A3_HUMAN (Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Homo sapiens GN=ATP2A3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 50/145 (34.48%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  328 GISSHEVEQRRKRYGWNEITTEK-ENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFG-----------VIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQES--DIKARELVPGDIIIIEEGESVPADARLI 720
            G+S  +V   R+RYG NE+ +E+ ++L+   L  F   ++ ++ LA L++  L  W + G           VI+ IL+ NA+VG +QE+ A   + +LK        V+R  ++    I+AR++VPGDI+ +  G+ VPAD RLI
Sbjct:   23 GLSPAQVTGARERYGPNELPSEEGKSLWELVLEQFEDLLVRILLLAALVSFVLA-WFEEGEETTTAFVEPLVIMLILVANAIVGVWQERNAESAIEALKEYEPEMGKVIRSDRKGVQRIRARDIVPGDIVEVAVGDKVPADLRLI 166          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT2A1_RANES (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Rana esculenta GN=ATP2A1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.128e-11
Identity = 51/145 (35.17%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  328 GISSHEVEQRRKRYGWNEITTEK-ENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFG-----------VIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQES--DIKARELVPGDIIIIEEGESVPADARLI 720
            G+S  +V++   ++G NE+  E+ ++L+      F   ++ ++ LA +++  L  W + G           VI+ IL+ NAVVG +QE+ A D + +LK        V R  ++S   IKARELVPGDI+ +  G+ VPAD RLI
Sbjct:   23 GLSLDQVKKNFDKFGPNELPAEEGKSLWELVAEQFEDLLVRILLLAAIISFVLA-WFEEGEETVTAFVEPFVILLILIANAVVGVWQERNAEDAIEALKEYEPEMGKVYRSDRKSVQRIKARELVPGDIVEVAVGDKVPADIRLI 166          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATP4A_XENLA (Potassium-transporting ATPase alpha chain 1 OS=Xenopus laevis GN=atp4a PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 5.335e-11
Identity = 49/179 (27.37%), Postives = 88/179 (49.16%), Query Frame = 1
Query:  298 DEMLEADIKQGISSHEVEQRRKRYGWNEITTEKENL-FIKFLGFFTGPV---LYVMELAVLLAAGLR---------DWIDFGV-IIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLICDYDAPEDFATYKELREQHALNPE 792
            ++     + +G+ S    +   R G NE+   K    +IKF     G +   ++V  +  L+A G+          D +   + +I ++++    G+YQE ++ +++AS K  +  +ATVVRDG +  I A +LV GD++ I+ G+ VPAD R+I       D ++     E    +PE
Sbjct:   59 EQKYTTSVSKGLKSAFAAEVILRDGPNELKPPKGTPEYIKFARQLAGGLQCLMWVAAVICLIAFGIEESQGDLTSADNLYLAITLIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVVRDGDKFQINANQLVVGDLVEIKGGDRVPADIRIITSQGCKVDNSSLTGESEPQTRSPE 237          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT1A1_CATCO (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Catostomus commersoni GN=atp1a1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.335e-11
Identity = 48/173 (27.75%), Postives = 89/173 (51.45%), Query Frame = 1
Query:  316 DIKQGISSHEVEQRRKRYGWNEIT----TEKENLFIK--FLGF----FTGPVLYVMELAVLLAAG---LRDWIDFGVIIG-ILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLICDYDAPEDFATYKELREQHALNPE 792
            D+ +G+S+   E+   R G N +T    T +   F K  F GF    +TG VL  +   +L A       D +  GV++  ++++     +YQ+ +++ ++ S K  +  +A VVRDG++  I A E+V GD++ ++ G+ +PAD R+I  +    D ++     E    +P+
Sbjct:   61 DLSKGLSNSRAEEILARDGPNALTPPPTTPEWVKFCKQMFGGFSMLLWTGAVLCFLAYGILAAMEDEPANDNLYLGVVLSAVVIITGCFSYYQDAKSSKIMDSFKNLVPQQALVVRDGEKKQINAEEVVIGDLVEVKGGDRIPADLRIISSHGCKVDNSSLTGESEPQTRSPD 233          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATC1_DUNBI (Cation-transporting ATPase CA1 OS=Dunaliella bioculata GN=CA1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.968e-11
Identity = 48/148 (32.43%), Postives = 76/148 (51.35%), Query Frame = 1
Query:  316 DIKQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWI--------------DFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARL 717
            D+ +G+S  +V+Q R +YG N++  E+     K +      +L    + +LL A + D+I              +  VI+ IL+ NA VG   E+ A   +  LK   A  ATV+R+GQ   I + ++VPGDI+ +  G  VPAD R+
Sbjct:   42 DLDRGLSDRDVQQARIKYGRNQMEAEQSTPLWKLILKQFDDLL----VKILLGAAIVDFIIAISEGESIQSGLIEPMVILLILVANATVGVVTERNAEKAIEQLKSYEADDATVLRNGQLQLIPSADIVPGDIVELAVGNKVPADTRV 185          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT2A1_MAKNI (Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 OS=Makaira nigricans GN=atp2a1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11
Identity = 45/145 (31.03%), Postives = 81/145 (55.86%), Query Frame = 1
Query:  328 GISSHEVEQRRKRYGWNEITTEK-ENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFG-----------VIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQES--DIKARELVPGDIIIIEEGESVPADARLI 720
            G+S  + ++   ++G+NE+  E+ ++++   +  F   ++ ++ LA  ++  L  W + G           VI+ IL+ NA+VG +QE+ A D + +LK        V R  ++S   IKARE+VPGDI+ +  G+ VPAD R++
Sbjct:   23 GLSPDQFKKNLDKFGYNELPAEEGKSIWDLIVEQFEDLLVRILLLAACISFVLA-WFEEGEETITAFVEPFVILLILIANAIVGVWQERNAEDAIEALKEYEPEMGKVYRSDRKSVQRIKAREIVPGDIVEVSVGDKVPADIRIV 166          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT1A_HYDAT (Sodium/potassium-transporting ATPase subunit alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11
Identity = 40/153 (26.14%), Postives = 83/153 (54.25%), Query Frame = 1
Query:  304 MLEADIKQGISSHEVEQRRKRYGWNEITTEKENL-FIKFLGFFTGP---VLYVMELAVLLAAGLR---------DWIDFGVIIGIL-LLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            M E  +++G+S + V +  +R G N +T  K+   ++KF     G    +L++  +    A G+R         D +  G+++ ++ ++     +YQE +++ ++ S K  I  +A V+RDG++  I A + V GD++ ++ G+ +PAD R++
Sbjct:   60 MYETSLEKGLSENIVARNLERDGLNALTPPKQTPEWVKFCKQMFGGFSMLLWIGAILCFFAFGIRAVRDTNPNMDELYLGIVLSVVVIITGCFSYYQESKSSKIMESFKKMIPQEALVLRDGKKITINAEQCVVGDVVFVKFGDRIPADIRIV 212          
The following BLAST results are available for this feature:
BLAST of FC878222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ATC1_SCHPO1.404e-1131.91Calcium-transporting ATPase 1 OS=Schizosaccharomyc... [more]
AT2A3_RAT1.834e-1133.79Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A3_CHICK1.834e-1133.79Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A3_HUMAN2.395e-1134.48Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A1_RANES3.128e-1135.17Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
ATP4A_XENLA5.335e-1127.37Potassium-transporting ATPase alpha chain 1 OS=Xen... [more]
AT1A1_CATCO5.335e-1127.75Sodium/potassium-transporting ATPase subunit alpha... [more]
ATC1_DUNBI6.968e-1132.43Cation-transporting ATPase CA1 OS=Dunaliella biocu... [more]
AT2A1_MAKNI9.100e-1131.03Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT1A_HYDAT9.100e-1126.14Sodium/potassium-transporting ATPase subunit alpha... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878222 ID=FC878222; Name=FC878222; organism=Citrus clementina; type=EST; length=862bp
TCGCTATCTAAGATGGCTGCTCCTCGCGTTAGCTTCGGCGAAAAGGATAT
GGAGAACGGTGGTGATGACGCGGCCGAAAGGTCTCGCAAGTGGTCGCAGG
CTCCTGGCAACATCGAGGACCTCGACGAGTACACTGCTCTGCAGAAGTAC
ATCTCTACCTACAGAGACCCCAAGGCCCACGCCGCCGAGGATGCTGAGGC
CAACGCTGCCGATGCTGGCAAGGGCAAGGCCTGGTGGCAGTTCTGGCGCT
CCGGCAACTCTGGTGCTGCCACTGGTGCCGACCCTGGATTCGTCCCCGAT
GAGATGCTCGAGGCCGATATCAAGCAGGGTATCTCCTCTCACGAGGTTGA
GCAGCGCCGCAAGCGCTACGGTTGGAACGAAATCACCACCGAGAAGGAGA
ACTTGTTCATCAAGTTCCTCGGTTTCTTCACTGGTCCTGTCCTCTATGTT
ATGGAACTCGCTGTCCTCCTCGCCGCCGGTCTTCGTGACTGGATCGACTT
TGGTGTGATTATTGGTATTCTTCTTCTCAACGCCGTCGTCGGTTGGTACC
AGGAAAAGCAGGCTGCCGATGTCGTCGCTTCTCTCAAGGGTGACATCGCC
ATGAAGGCGACTGTCGTCCGTGATGGCCAGGAATCCGACATCAAGGCTCG
CGAGCTCGTCCCCGGTGACATTATCATCATCGAGGAGGGTGAGTCCGTTC
CTGCCGATGCCCGTCTTATCTGCGACTACGATGCTCCCGAGGACTTCGCT
ACCTACAAGGAGCTCCGCGAACAGCACGCTCTCAACCCTGAGGAGGACCC
CGCCGGTTCTGAGGACGCTGAGGACGATNGGTGAGGGTGTTGCCCACCAG
GGTCACTCCATC
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