FC878232

Overview
NameFC878232
Unique NameFC878232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length928
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878232_ssr177 microsatellite FC878232_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15151 contig Ccv1_Contig15151:28..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: LGMN_RAT (Legumain OS=Rattus norvegicus GN=Lgmn PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 9.935e-75
Identity = 137/257 (53.31%), Postives = 181/257 (70.43%), Query Frame = 3
Query:  153 GGGGAKVN-DDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG-GSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPLPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVK 917
            G G   +  DD +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE IIV MYDDIA NEENP PGV+IN P+G DVYKGVPKDYTGEDVT ENF AV+ G++ A+ G GSGKV+ SGP DH+F++++DHG  G+L  P +  ++  +L   ++  +    Y+ +VFY+EACESGS+    LP+ +++YATTA+N  ESS+  Y          E ST LGD YS+ WMEDSD+ +L  ETLH+QY LVK
Sbjct:   14 GAGAVHIGVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIIVMMYDDIANNEENPTPGVVINRPNGTDVYKGVPKDYTGEDVTPENFLAVLRGDEEAVKGKGSGKVLKSGPRDHVFVYFTDHGATGILVFP-NEDLHVKDLNKTIRYMYEHKMYQKMVFYIEACESGSMMNH-LPDDIDVYATTAANPNESSYACYYD-------EERSTYLGDWYSVNWMEDSDVEDLTKETLHKQYHLVK 261          
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: LGMN_HUMAN (Legumain OS=Homo sapiens GN=LGMN PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.931e-74
Identity = 133/255 (52.16%), Postives = 181/255 (70.98%), Query Frame = 3
Query:  156 GGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG-GSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPLPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVK 917
            G GA   DD +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE I+V MYDDIA++E+NP PG++IN P+G DVY+GVPKDYTGEDVT +NF AV+ G+  A+ G GSGKV+ SGP DH+FI+++DHG  G+L  P +  ++  +L + +   +    Y+ +VFY+EACESGS+    LP+ +N+YATTA+N  ESS+  Y          + ST LGD YS+ WMEDSD+ +L  ETLH+QY LVK
Sbjct:   14 GIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGDAEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFP-NEDLHVKDLNETIHYMYKHKMYRKMVFYIEACESGSMMNH-LPDNINVYATTAANPRESSYACYYD-------EKRSTYLGDWYSVNWMEDSDVEDLTKETLHKQYHLVK 259          
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: LGMN_MACFA (Legumain OS=Macaca fascicularis GN=LGMN PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 8.411e-74
Identity = 132/255 (51.76%), Postives = 181/255 (70.98%), Query Frame = 3
Query:  156 GGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG-GSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPLPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVK 917
            G GA   DD +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE I+V MYDDIA++E+NP PG++IN P+G DVY+GVPKDYTGEDVT +NF AV+ G+  A+ G GSGKV+ SGP DH+F++++DHG  G+L  P +  ++  +L + +   +    Y+ +VFY+EACESGS+    LP+ +N+YATTA+N  ESS+  Y          + ST LGD YS+ WMEDSD+ +L  ETLH+QY LVK
Sbjct:   14 GIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGDAEAVKGIGSGKVLKSGPQDHVFVYFTDHGSTGILVFP-NEDLHVKDLNETIYYMYKHKMYRKMVFYIEACESGSMMNH-LPDNINVYATTAANPRESSYACYYD-------EKRSTYLGDWYSVNWMEDSDVEDLTKETLHKQYHLVK 259          
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: LGMN_PONAB (Legumain OS=Pongo abelii GN=LGMN PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.874e-73
Identity = 131/253 (51.78%), Postives = 180/253 (71.15%), Query Frame = 3
Query:  162 GAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG-GSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPLPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVK 917
            GA   DD +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE I+V MYDDIA++E+NP PG++IN P+G DVY+GVPKDYTGEDVT +NF AV+ G+  A+ G GSGKV+ SGP DH+F++ +DHG  G+L  P +  ++ ++L + +   +    Y+ +VFY+EACESGS+    LP+ +N+YATTA+N  ESS+  Y          + ST LGD YS+ WMEDSD+ +L  ETLH+QY LVK
Sbjct:   16 GAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGDAEAVKGIGSGKVLKSGPQDHVFVYSTDHGSTGILVFP-NEDLHVEDLNETIHYMYKHKMYRKMVFYIEACESGSMMNH-LPDNINVYATTAANPRESSYACYYD-------EKRSTYLGDWYSVNWMEDSDVEDLTKETLHKQYHLVK 259          
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: LGMN_MOUSE (Legumain OS=Mus musculus GN=Lgmn PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 3.196e-73
Identity = 137/257 (53.31%), Postives = 178/257 (69.26%), Query Frame = 3
Query:  153 GGGGAKVN-DDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG-GSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPLPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVK 917
            G G   V  DD +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE IIV MYDDIA +EENP PGV+IN P+G DVYKGV KDYTGEDVT ENF AV+ G+  A+ G GSGKV+ SGP DH+FI+++DHG  G+L  P    ++  +L   ++  +    Y+ +VFY+EACESGS+    LP+ +N+YATTA+N +ESS+  Y          E  T LGD YS+ WMEDSD+ +L  ETLH+QY LVK
Sbjct:   14 GAGAVPVGVDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNGIPDEQIIVMMYDDIANSEENPTPGVVINRPNGTDVYKGVLKDYTGEDVTPENFLAVLRGDAEAVKGKGSGKVLKSGPRDHVFIYFTDHGATGILVFPNDD-LHVKDLNKTIRYMYEHKMYQKMVFYIEACESGSMMNH-LPDDINVYATTAANPKESSYACYYD-------EERGTYLGDWYSVNWMEDSDVEDLTKETLHKQYHLVK 261          
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: LGMN_BOVIN (Legumain OS=Bos taurus GN=LGMN PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 4.615e-72
Identity = 131/255 (51.37%), Postives = 181/255 (70.98%), Query Frame = 3
Query:  156 GGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG-GSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPLPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVK 917
            G GA   +D +  G  W V++AGSNG++NYRHQAD CHAYQ++ + G+ DE IIV MYDDIA +E+NP PG++IN P+G DVY+GV KDYTGEDVT +NF AV+ G+  A+ G GSGKV+ SGP DH+F++++DHG  G+L  P +  ++  +L + ++  +    Y+ +VFY+EACESGS+   L P+ +N+YATTA+N  ESS+  Y          + ST LGD YS+ WMEDSD+ +L  ETLH+QY+LVK
Sbjct:   14 GTGAVPLEDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIVHRNGIPDEQIIVMMYDDIANSEDNPTPGIVINRPNGSDVYQGVLKDYTGEDVTPKNFLAVLRGDAEAVKGVGSGKVLKSGPRDHVFVYFTDHGATGILVFP-NEDLHVKDLNETIRYMYEHKMYQKMVFYIEACESGSMMNHLPPD-INVYATTAANPRESSYACYYD-------EQRSTFLGDWYSVNWMEDSDVEDLTKETLHKQYQLVK 259          
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: HGLB_SCHJA (Hemoglobinase OS=Schistosoma japonicum GN=HAEM PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.998e-63
Identity = 124/239 (51.88%), Postives = 155/239 (64.85%), Query Frame = 3
Query:  201 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPLPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVK 917
            +WAVL+AGSNGF NYRHQAD+CHAY +L   G+K E+II FMYDDIA N+ENP PG I N     D YKGV  DY G+ V  + F  V+ G+K A     GKV+ SG ND +FI+++DHG PG+L  P    ++A   I+ LK       Y  LV Y+EACESGS+F GLLP  +NIYATTA+  +ESS+ T+C        P  S+CL DLYS  W+ DS+ H L   TL QQY+ VK
Sbjct:   31 KWAVLVAGSNGFENYRHQADVCHAYHVLLSKGVKPEHIITFMYDDIAHNKENPFPGKIFNDYRHKDYYKGVVIDYKGKKVNPKTFLQVLKGDKRA----GGKVLKSGKNDDVFIYFTDHGAPGILAFPDDD-LHAKPFINTLKYLRQHRRYSKLVIYVEACESGSMFAGLLPTDINIYATTAARPDESSYATFCDD------PRISSCLADLYSYDWIVDSEKHQLTQRTLDQQYKEVK 258          
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: HGLB_SCHMA (Hemoglobinase OS=Schistosoma mansoni PE=1 SV=3)

HSP 1 Score: 240.736 bits (613), Expect = 8.724e-63
Identity = 121/251 (48.21%), Postives = 165/251 (65.74%), Query Frame = 3
Query:  168 KVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPLPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKQ 920
            +V+D+  S   +WAVL+AGSNG+ NYRHQAD+CHAY +LR  G+K E+II  MYDDIA+N  NP PG + N  +  D Y+GV  DY G++V  + F  V+ G+K+A     GKV+ SG ND +FI+++DHG PG++  P    +YA E +  LK  H+   Y  LV Y+EA ESGS+F+ +LP  L+IYATTA+N+ E S+ T+C        P  +TCL DLYS  W+ DS  H+L   TL QQY+ VK+
Sbjct:   26 EVSDETVSDNNKWAVLVAGSNGYPNYRHQADVCHAYHVLRSKGIKPEHIITMMYDDIAYNLMNPFPGKLFNDYNHKDWYEGVVIDYRGKNVNSKTFLKVLKGDKSA----GGKVLKSGKNDDVFIYFTDHGAPGLIAFPDDE-LYAKEFMSTLKYLHSHKRYSKLVIYIEANESGSMFQQILPSNLSIYATTAANSTECSYSTFCGD------PTITTCLADLYSYNWIVDSQTHHLTQRTLDQQYKEVKR 265          
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: GPI8_DROME (Putative GPI-anchor transamidase OS=Drosophila melanogaster GN=CG4406 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.323e-23
Identity = 67/195 (34.36%), Postives = 104/195 (53.33%), Query Frame = 3
Query:  204 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVV-DSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESS 767
            WAVL+  S  ++NYRH A++   Y+ +++ G+ D  II+ + DD+A N  NPRPG + N+       +GDD    V  DY G +VTVENF  ++ G     T  S K++ D+G N  + I+ + HGG G L    S  I + EL D +++      Y  L F ++ C++ S++E       N+ A  +S   E S
Sbjct:   47 WAVLVDASRFWFNYRHVANVLSIYRSVKRLGIPDSQIILMIADDMACNARNPRPGQVYNNANQHINVYGDD----VEVDYRGYEVTVENFVRLLTGRTQNGTARSKKLLSDAGSN--VLIYLTGHGGDGFLKFQDSEEITSQELADGIQQMWEKKRYNELFFMVDTCQAASLYEKFTSP--NVLAVASSLVGEDS 233          
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: GPI8_MOUSE (GPI-anchor transamidase OS=Mus musculus GN=Pigk PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.568e-22
Identity = 76/245 (31.02%), Postives = 117/245 (47.76%), Query Frame = 3
Query:   51 ITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESS 767
            +  L ALA ++ GS   AG I     +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+  S++E       NI A  +S   E S
Sbjct:   11 VATLAALALLSLGS-SAAGHI---EDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNARNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRVPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP--NIMALASSQVGEDS 232          
The following BLAST results are available for this feature:
BLAST of FC878232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
LGMN_RAT9.935e-7553.31Legumain OS=Rattus norvegicus GN=Lgmn PE=2 SV=1[more]
LGMN_HUMAN4.931e-7452.16Legumain OS=Homo sapiens GN=LGMN PE=1 SV=1[more]
LGMN_MACFA8.411e-7451.76Legumain OS=Macaca fascicularis GN=LGMN PE=2 SV=1[more]
LGMN_PONAB1.874e-7351.78Legumain OS=Pongo abelii GN=LGMN PE=2 SV=1[more]
LGMN_MOUSE3.196e-7353.31Legumain OS=Mus musculus GN=Lgmn PE=1 SV=1[more]
LGMN_BOVIN4.615e-7251.37Legumain OS=Bos taurus GN=LGMN PE=1 SV=1[more]
HGLB_SCHJA2.998e-6351.88Hemoglobinase OS=Schistosoma japonicum GN=HAEM PE=... [more]
HGLB_SCHMA8.724e-6348.21Hemoglobinase OS=Schistosoma mansoni PE=1 SV=3[more]
GPI8_DROME2.323e-2334.36Putative GPI-anchor transamidase OS=Drosophila mel... [more]
GPI8_MOUSE2.568e-2231.02GPI-anchor transamidase OS=Mus musculus GN=Pigk PE... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878232 ID=FC878232; Name=FC878232; organism=Citrus clementina; type=EST; length=928bp
CAATCAACCCCCTTCAAAAAACCATGACGCGCCTTGCCTCCGGCGTGCTA
ATCACGCTCCTAGTCGCTCTTGCAGGAATCGCCGATGGAAGCAGAGACAT
AGCAGGTGACATTCTGAAGCTACCATCGGAAGCCTATAGGTTCTTCCATA
ATGGTGGGGGAGGGGCAAAGGTCAACGATGATGATGATTCTGTCGGCACG
AGATGGGCCGTCCTGCTTGCCGGATCTAATGGCTTCTGGAATTACAGGCA
TCAGGCTGATATTTGTCATGCTTATCAACTCTTGAGGAAAGGTGGGCTGA
AGGATGAAAATATTATTGTTTTCATGTATGATGACATCGCTTTCAATGAA
GAGAACCCAAGGCCTGGAGTCATCATTAACCACCCCCATGGCGATGATGT
TTACAAAGGAGTTCCAAAGGATTACACGGGGGAAGATGTTACTGTTGAAA
ACTTTTTTGCTGTTATCCTGGGAAATAAAACAGCTCTTACAGGGGGCAGT
GGGAAGGTTGTGGATAGCGGCCCCAATGATCATATTTTCATATTCTACTC
AGATCATGGTGGCCCTGGGGTGCTAGGGATGCCCACCAGTCGATACATAT
ATGCTGATGAACTGATCGATGTCTTAAAAAAGAAGCATGCTTCTGGGAAC
TACAAAAGCTTGGTATTTTATCTCGAAGCCTGTGAATCTGGAAGTATCTT
TGAGGGTCTTCTTCCTGAGGGCTTAAATATCTATGCAACCACAGCTTCAA
ATGCTGAAGAGAGCAGTTGGGGGACCTATTGTCCTGGAGAGATTCCTGGT
CCTCTCCCTGAATATAGCACTTGTTTGGGTGACTTGTATAGTATTGCTTG
GATGGAGGACAGTGACATACACAACTTGCGGACAGAAACTCTTCACCAGC
AGTATGAACTGGTTAAACAAGGACTGCT
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