FC878232

Overview
NameFC878232
Unique NameFC878232
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length928
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878232_ssr177 microsatellite FC878232_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15151 contig Ccv1_Contig15151:28..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: GPI8_PONAB (GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.354e-22
Identity = 73/255 (28.63%), Postives = 119/255 (46.67%), Query Frame = 3
Query:   21 TMTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESS 767
            +++R AS +   LL++   +A            +  +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+  S++E       NI A  +S   E S
Sbjct:    6 SLSRAASTLAAVLLLSFGSVAASH---------IEDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP--NIMALASSQVGEDS 232          
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: GPI8_YEAST (GPI-anchor transamidase OS=Saccharomyces cerevisiae GN=GPI8 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.380e-22
Identity = 60/199 (30.15%), Postives = 107/199 (53.77%), Query Frame = 3
Query:  204 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH-PHGDDVY-KGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEI 794
            WAVL++ S  ++NYRH A++   Y+ +++ G+ D  II+ + DD+A N  N  PG + N+  H  D+Y   V  DY G +VTVENF  ++    T     S +++ +  N +IFI+ + HGG   L    +  I ++++ D  ++ +    Y  + F ++ C++ +++        NI A  +S  +ESS+  +   EI
Sbjct:   39 WAVLVSTSRFWFNYRHMANVLSMYRTVKRLGIPDSQIILMLSDDVACNSRNLFPGSVFNNKDHAIDLYGDSVEVDYRGYEVTVENFIRLLTDRWTEDHPKSKRLL-TDENSNIFIYMTGHGGDDFLKFQDAEEIASEDIADAFQQMYEKKRYNEIFFMIDTCQANTMYSKFYSP--NILAVGSSEMDESSYSHHSDVEI 234          
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: GPI8_HUMAN (GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 9.758e-22
Identity = 74/250 (29.60%), Postives = 116/250 (46.40%), Query Frame = 3
Query:   36 ASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESS 767
            A+ VL T+L+   G    S         +  +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+  S++E       NI A  +S   E S
Sbjct:   10 AATVLATVLLLSFGSVAASH--------IEDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP--NIMALASSQVGEDS 232          
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: GPI8_BOVIN (GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.758e-22
Identity = 63/194 (32.47%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  204 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESS 767
            WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G   + T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+  S++E       NI A  +S   E S
Sbjct:   46 WAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPSSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP--NIMALASSQVGEDS 232          
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: GPI8_PIG (GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.325e-21
Identity = 63/194 (32.47%), Postives = 97/194 (50.00%), Query Frame = 3
Query:  204 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESS 767
            WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY    VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    S  I   EL D  ++      Y  L+F ++ C+  S++E       NI A  +S   E S
Sbjct:   46 WAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDD----VEVDYRSYVVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP--NIMALASSQVGEDS 232          
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: GPI8_CAEEL (Putative GPI-anchor transamidase OS=Caenorhabditis elegans GN=T05E11.6 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 3.139e-20
Identity = 58/210 (27.62%), Postives = 108/210 (51.43%), Query Frame = 3
Query:  150 NGGGGAKVNDDDDSVG--TRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVY-KGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSW 770
            N G   K+++  D+ G    WAVL+  S  ++NYRH +++   Y  +++ G+ D NII+ + +D+  N  NPRPG +     G ++Y   V  DY GE+VTVE+F  V+ G     T  S +++ +    ++ I+ + HGG   +    S  +   +L   ++       Y  ++   ++C S S++E +  +  N+ + ++S   E S+
Sbjct:   19 NTGLQLKIDELFDTPGHTNNWAVLVCTSKFWFNYRHVSNVLALYHSIKRLGIPDSNIIMMLAEDVPCNSRNPRPGTVYAARAGTNLYGSDVEVDYRGEEVTVESFIRVLTGRHHPATPRSKRLL-TDHQSNVLIYLTGHGGDSFMKFQDSEELTNVDLAYAIQTMFEDNRYHEMLVIADSCRSASMYEWI--DSPNVLSLSSSLTHEESY 225          
BLAST of FC878232 vs. ExPASy Swiss-Prot
Match: GPI8_SCHPO (GPI-anchor transamidase OS=Schizosaccharomyces pombe GN=gpi8 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.722e-18
Identity = 55/206 (26.70%), Postives = 106/206 (51.46%), Query Frame = 3
Query:  183 DDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVII-NHPHGDDVY-KGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEI 794
            + S    WAVL++ S  ++NYRH A++   Y+ +++ G+ D  II+ + DD A N  N  PG +  N     D+Y + +  DY G +VTVE F  ++       T  S +++ +    +I I+ + HGG G +    +  + +++L D +++ H    Y  ++F ++ C++ S++  +     N+ A  +S    SS+  +   +I
Sbjct:   20 ESSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPDSQIILMIADDYACNSRNLFPGTVFDNADRALDLYGEEIEIDYKGYEVTVEAFIRLLTERVPENTPASKRLL-TNERSNILIYMTGHGGDGFIKFQDAEELSSEDLADAIEQIHQHKRYNEILFMVDTCQANSLYTKIYSP--NVLAIGSSEVGTSSYSHHADIDI 222          
The following BLAST results are available for this feature:
BLAST of FC878232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GPI8_PONAB3.354e-2228.63GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE... [more]
GPI8_YEAST4.380e-2230.15GPI-anchor transamidase OS=Saccharomyces cerevisia... [more]
GPI8_HUMAN9.758e-2229.60GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE... [more]
GPI8_BOVIN9.758e-2232.47GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2... [more]
GPI8_PIG6.325e-2132.47GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2... [more]
GPI8_CAEEL3.139e-2027.62Putative GPI-anchor transamidase OS=Caenorhabditis... [more]
GPI8_SCHPO1.722e-1826.70GPI-anchor transamidase OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878232 ID=FC878232; Name=FC878232; organism=Citrus clementina; type=EST; length=928bp
CAATCAACCCCCTTCAAAAAACCATGACGCGCCTTGCCTCCGGCGTGCTA
ATCACGCTCCTAGTCGCTCTTGCAGGAATCGCCGATGGAAGCAGAGACAT
AGCAGGTGACATTCTGAAGCTACCATCGGAAGCCTATAGGTTCTTCCATA
ATGGTGGGGGAGGGGCAAAGGTCAACGATGATGATGATTCTGTCGGCACG
AGATGGGCCGTCCTGCTTGCCGGATCTAATGGCTTCTGGAATTACAGGCA
TCAGGCTGATATTTGTCATGCTTATCAACTCTTGAGGAAAGGTGGGCTGA
AGGATGAAAATATTATTGTTTTCATGTATGATGACATCGCTTTCAATGAA
GAGAACCCAAGGCCTGGAGTCATCATTAACCACCCCCATGGCGATGATGT
TTACAAAGGAGTTCCAAAGGATTACACGGGGGAAGATGTTACTGTTGAAA
ACTTTTTTGCTGTTATCCTGGGAAATAAAACAGCTCTTACAGGGGGCAGT
GGGAAGGTTGTGGATAGCGGCCCCAATGATCATATTTTCATATTCTACTC
AGATCATGGTGGCCCTGGGGTGCTAGGGATGCCCACCAGTCGATACATAT
ATGCTGATGAACTGATCGATGTCTTAAAAAAGAAGCATGCTTCTGGGAAC
TACAAAAGCTTGGTATTTTATCTCGAAGCCTGTGAATCTGGAAGTATCTT
TGAGGGTCTTCTTCCTGAGGGCTTAAATATCTATGCAACCACAGCTTCAA
ATGCTGAAGAGAGCAGTTGGGGGACCTATTGTCCTGGAGAGATTCCTGGT
CCTCTCCCTGAATATAGCACTTGTTTGGGTGACTTGTATAGTATTGCTTG
GATGGAGGACAGTGACATACACAACTTGCGGACAGAAACTCTTCACCAGC
AGTATGAACTGGTTAAACAAGGACTGCT
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