FC878236

Overview
NameFC878236
Unique NameFC878236
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length899
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10840 contig Ccv1_Contig10840:54..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: PDE12_MOUSE (2',5'-phosphodiesterase 12 OS=Mus musculus GN=Pde12 PE=2 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 4.771e-14
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 1
Query:  352 VSYNILGDKNA---FKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYF---DILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKE 660
            VSYNIL D  A   F    LY       ++ + R+ LI +EL G N D+IC+QEVDR      ++  +E  G  G ++ +     +G A F++  KFRLL Q  I F+E
Sbjct:  297 VSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVDRAVFSDSLVPALEAFGLEGVFRIK---QHEGLATFYRKSKFRLLSQHDISFQE 402          

HSP 2 Score: 37.7354 bits (86), Expect = 4.771e-14
Identity = 25/91 (27.47%), Postives = 44/91 (48.35%), Query Frame = 2
Query:  641 QALNLKSLAFVKMWHNFPLLR----QMRNTKSRRVLVGNIHVLYNPNRGEVKLGQI-CFLSSRAQIVAEKWGNIPVVLAGDFNITLQSAIY 898
            + L L  LA  K+     +L+    Q     S+++ V N H+ ++P  G ++L Q+   L     +  + +  IPV+  GDFN T  + +Y
Sbjct:  415 EKLALNPLAQEKVLQRSSVLQISVLQSTTDSSKKICVANTHLYWHPKGGYIRLIQMEVALVHIRHVSRDLYPGIPVIFCGDFNSTPSTGMY 505          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CN6LA_XENLA (CCR4-NOT transcription complex subunit 6-like-A OS=Xenopus laevis GN=cnot6l-A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.783e-14
Identity = 46/144 (31.94%), Postives = 78/144 (54.17%), Query Frame = 1
Query:  283 PDVLRH--WIDA-DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDI-LNVMEKTGYAGCYKRRTG---------DNVDGCAMFWKADKFRLLEQTSIEFKEFGL 669
            P+ L H  WI   + + I     F+V+ YN+L DK A   R LY       + W  RK+ I  E+I  + DII +QEV+  +YF + +  +E+ GY G +  ++           +VDGCA+F++ +KF L+++ ++EF +  +
Sbjct:  161 PEQLPHRPWITLKERDQILPSVSFTVMCYNVLCDKYAT--RQLYGYCPSWALNWEYRKKGIMDEIISCDADIISLQEVETEQYFTLFMPALEERGYDGFFSPKSRAKIMSDQEKKHVDGCAIFFRTEKFSLVQKHTVEFNQIAM 302          

HSP 2 Score: 31.187 bits (69), Expect = 4.783e-14
Identity = 19/77 (24.68%), Postives = 35/77 (45.45%), Query Frame = 2
Query:  698 LRQMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKW-----------GNIPVVLAGDFNITLQSAI 895
            ++   +++ + ++V N H+ ++P   +VKL Q     S  + + EK             +IP VL  D N  L S +
Sbjct:  338 MKPHHSSEKQLLMVANAHMHWDPEYSDVKLIQTMMFVSELKSIIEKAACRPGSPTPDPNSIPFVLCADLNSLLDSGV 414          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: NOCT_HUMAN (Nocturnin OS=Homo sapiens GN=CCRN4L PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.206e-14
Identity = 57/197 (28.93%), Postives = 92/197 (46.70%), Query Frame = 1
Query:  283 PDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILN-VMEKTGYAG---------CYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLREN---VAQ-LSAFEADAQH-----KIKKSTGW*HTRSL*SKPRGSEIRSNLFSFLKG 816
            P   R ++D   +  S+     V+ +NIL      + +D +     E +KW  RK LI +E++   PDI+C+QEVD YFD    ++ + GY G         C      +  DGCA+F+  ++F+L+   +I      L+ N   +AQ L   E+  Q       +K  TGW   RS     +G ++  NL +  +G
Sbjct:  123 PRFQRDFVDLRTDCPSTHPPIRVMQWNILAQALG-EGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKTNQVAIAQTLECKESGRQFCIAVTHLKARTGWERFRS----AQGCDLLQNLQNITQG 314          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_CANAL (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Candida albicans GN=CCR4 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.001e-14
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 1
Query:  331 SQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD-RYFD--ILNVMEKTGYAGCYKRRT---------GDNVDGCAMFWKADKFRLLEQTSIEF 654
            S + F+V+SYN L    A     +Y+      ++W+ RK L+ +E++  N DI+CMQEV+ + F    L VM   GY G +  +T            VDGCA F+K DKF L+ + + E+
Sbjct:  452 SSDNFTVLSYNTLCQHYATPK--MYKFTPSWALQWDYRKNLLEKEVLNYNTDIVCMQEVETKTFQEFWLPVMTANGYKGYFFSKTRSKTMSETDSKKVDGCATFFKNDKFSLIHKQNFEY 569          

HSP 2 Score: 33.8834 bits (76), Expect = 8.001e-14
Identity = 22/81 (27.16%), Postives = 40/81 (49.38%), Query Frame = 2
Query:  686 NFPLLRQMRNTKS-RRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWG---------NIPVVLAGDFNITLQSAIY 898
            N  L+  +++ +S  ++ V N H+ ++P   +VK  Q+  L    Q + +K+          N  +V+ GDFN    SA+Y
Sbjct:  594 NIALISYLQHKESGEKIAVVNTHLHWDPAFNDVKALQVGILLEELQGIIKKYRHTNSNEDIKNSSIVVCGDFNSVKDSAVY 674          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: PDE12_BOVIN (2',5'-phosphodiesterase 12 OS=Bos taurus GN=PDE12 PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 8.051e-14
Identity = 44/129 (34.11%), Postives = 62/129 (48.06%), Query Frame = 1
Query:  352 VSYNILGDKNA---FKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYF---DILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRENVAQLSAFEADAQHK 720
            VSYNIL D  A   F    LY       ++ + R+ LI +EL G N D+IC+QEVDR      ++  +E  G  G ++ +     +G A F++  KF LL Q  I F E           A ++D  HK
Sbjct:  298 VSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVDRCVFTDSLMPALEAFGLEGVFRIK---QHEGLATFYRKSKFSLLSQHDIAFHE-----------ALQSDPLHK 412          

HSP 2 Score: 39.6614 bits (91), Expect = 8.051e-14
Identity = 19/66 (28.79%), Postives = 35/66 (53.03%), Query Frame = 2
Query:  704 QMRNTKSRRVLVGNIHVLYNPNRGEVKLGQICF-LSSRAQIVAEKWGNIPVVLAGDFNITLQSAIY 898
            Q     S+++ V N H+ ++P  G ++L Q+   L+    +  + +  IPV+  GDFN T  + +Y
Sbjct:  441 QSTKDSSKKICVANTHLYWHPKGGYIRLIQMAVALAHIRHVSCDLYPGIPVIFCGDFNSTPSTGMY 506          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_EMENI (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Emericella nidulans GN=ccr4 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.043e-13
Identity = 47/142 (33.10%), Postives = 66/142 (46.48%), Query Frame = 1
Query:  283 PDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 672
            P   R W+  D    +S ++ SV+SYN L D +A +    Y   R   + W  R+  I  EL   +PDIIC+QE+D+            Y D   V    G A   +      VDGCA F+K  KF LL++  I F +  +R
Sbjct:  289 PPPARDWLVLDETAATSPDKVSVLSYNTLCDSSATQSHYGYAPSRV--LSWEFRRETILNELRAHDPDIICLQEIDQGSYNEFFREQLAYSDYKGVFWPRGRAMGMQEEDAKGVDGCATFFKGSKFILLDKQVINFGQTAVR 428          

HSP 2 Score: 25.409 bits (54), Expect = 1.043e-13
Identity = 16/47 (34.04%), Postives = 24/47 (51.06%), Query Frame = 2
Query:  710 RNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIP 850
            R T SR ++V N H+ ++P   +VKL Q   L       +EK+   P
Sbjct:  457 RQTGSRFIIV-NAHLYWDPAFKDVKLIQTAILMEEITKHSEKYAKWP 502          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_ASPCL (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus clavatus GN=ccr4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.760e-13
Identity = 49/148 (33.11%), Postives = 68/148 (45.95%), Query Frame = 1
Query:  265 PFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 672
            P   P PD  R W+  D    +S E+ +V+SYN L D +A +    Y   R   + W  R+ LI  EL     DI+C+QE+D+            Y D   V    G A   +      VDGCA F+K  KF LL++  I F +  +R
Sbjct:  274 PVHLPPPD--RDWVVLDETASASTEKITVLSYNTLCDSSATQSHYGYAPARV--LSWEFRRELILSELRSHGSDIVCLQEIDQGSYNEYFREQLAYNDYKGVYWPRGRAMGMQEEDAKGVDGCATFFKGSKFILLDKQLINFGQTAVR 417          

HSP 2 Score: 24.2534 bits (51), Expect = 1.760e-13
Identity = 15/47 (31.91%), Postives = 24/47 (51.06%), Query Frame = 2
Query:  710 RNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIP 850
            R T SR ++V N H+ ++P   +VKL Q   L      ++E +   P
Sbjct:  446 RQTGSRFIVV-NAHLYWDPAFKDVKLIQTAILMEEITKLSETYAKWP 491          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_ASPOR (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus oryzae GN=ccr4 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.622e-13
Identity = 50/150 (33.33%), Postives = 73/150 (48.67%), Query Frame = 1
Query:  265 PFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR-----YFDILNVMEKTGYAGCY---------KRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 672
            P + P PD  R W+  D    +S E+ +V+SYN L D +A +    Y   R   + W  R+ +I  EL   + DI+C+QEVD+     YF     +   GY G Y         +     +VDGCA F+K  KF LL++  I F +  +R
Sbjct:  354 PENPPPPD--RDWVILDETAGTSTEKITVLSYNALCDSSATQSHFGYTPSRA--LSWEFRRDVILSELRSHDSDIVCLQEVDQGSYNGYFR--EQLAYNGYKGVYWPRGRAMGMQEEEAKSVDGCATFFKGTKFILLDKQMINFGQTAVR 497          

HSP 2 Score: 23.0978 bits (48), Expect = 2.622e-13
Identity = 12/41 (29.27%), Postives = 20/41 (48.78%), Query Frame = 2
Query:  728 RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIP 850
            R +V N H+ ++P   +VKL Q   L      ++E +   P
Sbjct:  531 RFIVVNAHLYWDPAFKDVKLIQTAILMEEITKLSETYAKWP 571          

HSP 3 Score: 21.9422 bits (45), Expect = 2.622e-13
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  845 IPVVLAGDFNITLQSAIY 898
            IP+ + GDFN +  SA Y
Sbjct:  607 IPLFMCGDFNSSPGSAAY 624          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_ASPNC (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ccr4 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.450e-13
Identity = 51/151 (33.77%), Postives = 69/151 (45.70%), Query Frame = 1
Query:  265 PFDEPSPDVLRHWIDADPNPISSQ---ERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDR------------YFDILNVMEKTGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 672
            P   P PD  R WI  D    SS    E+ +V+S+N L D +A      Y   R   + W  R+ LI  EL   + DIIC+QE+D+            Y D   V    G A   +     +VDGCA F+K  KF LL++  I F +  +R
Sbjct:  274 PVHLPPPD--RDWIILDETASSSNSPTEKITVLSHNALCDSSATPSHFGYTPSRV--LSWEFRRELILSELRSHDSDIICLQEIDQGSYNGFFREQLAYNDYKGVYWPRGRAMGMQEEEAKSVDGCATFFKGSKFILLDKQMINFGQTAVR 420          

HSP 2 Score: 27.335 bits (59), Expect = 8.450e-13
Identity = 21/81 (25.93%), Postives = 31/81 (38.27%), Query Frame = 2
Query:  728 RVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWG------------------------NIPVVLAGDFNITLQSAIY 898
            R +V N H+ ++P   +VKL Q   L      ++EK+                          IP+ + GDFN    SA Y
Sbjct:  454 RFIVVNAHLYWDPAFKDVKLIQTAILMEEITKLSEKYAKFPPCTDKTAFRFSEAEVEYASGDQIPLFMCGDFNSAPGSAAY 534          
BLAST of FC878236 vs. ExPASy Swiss-Prot
Match: CCR4_ENCCU (Probable glucose-repressible alcohol dehydrogenase transcriptional effector homolog OS=Encephalitozoon cuniculi GN=CCR4 PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 8.516e-13
Identity = 41/136 (30.15%), Postives = 64/136 (47.06%), Query Frame = 1
Query:  295 RHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQN---VRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRY--FDILN--VMEKTGYAGCYKRR-------TGDNVDGCAMFWKADKFRLLEQTSIEFKE 660
            R WI+     +   +  SV ++NIL   N +  R  Y     +  E+     R+  + QE++  N DI+C+QE++ Y  FD     +  +  Y      R          NVDGCA+FW+  KFRL+ Q  I+F +
Sbjct:  156 RLWIECTGKNVFYGDTVSVGTFNILS--NIYATRMTYAPSWVINSEF-----RREGVLQEIVLYNVDILCLQEIELYSFFDFYKEQLEMRCNYDSIIYPRGRVKSVPDKKNVDGCAIFWRRSKFRLIAQFPIDFHQ 284          

HSP 2 Score: 41.2022 bits (95), Expect = 8.516e-13
Identity = 19/64 (29.69%), Postives = 36/64 (56.25%), Query Frame = 2
Query:  707 MRNTKSRRVLVGNIHVLYNPNRGEVKLGQICFLSSRAQIVAEKWGNIPVVLAGDFNITLQSAIY 898
            +     ++VLV N H+ ++P+  ++KL Q+  L    + V+ +  N  ++L GDFN    S++Y
Sbjct:  314 LERPNGQQVLVMNTHIFWDPDYPDIKLLQVLLLVEEIKRVSSRHPNACLLLQGDFNSLRSSSVY 377          
The following BLAST results are available for this feature:
BLAST of FC878236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PDE12_MOUSE4.771e-1437.612',5'-phosphodiesterase 12 OS=Mus musculus GN=Pde1... [more]
CN6LA_XENLA4.783e-1431.94CCR4-NOT transcription complex subunit 6-like-A OS... [more]
NOCT_HUMAN7.206e-1428.93Nocturnin OS=Homo sapiens GN=CCRN4L PE=2 SV=2[more]
CCR4_CANAL8.001e-1435.00Glucose-repressible alcohol dehydrogenase transcri... [more]
PDE12_BOVIN8.051e-1434.112',5'-phosphodiesterase 12 OS=Bos taurus GN=PDE12 ... [more]
CCR4_EMENI1.043e-1333.10Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_ASPCL1.760e-1333.11Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_ASPOR2.622e-1333.33Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_ASPNC8.450e-1333.77Glucose-repressible alcohol dehydrogenase transcri... [more]
CCR4_ENCCU8.516e-1330.15Probable glucose-repressible alcohol dehydrogenase... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878236 ID=FC878236; Name=FC878236; organism=Citrus clementina; type=EST; length=899bp
AGAGAGTGGTTACTTGTGGATCAATCAATGAGGTCCGAAGCCACTTCCTC
CTCTTCTTGGCTCGGCCGGATCCCACCAACGGCCACCTCCGCGCCGAGCG
GCGGCTCCGGCAAGTGCCGGCACTTCATCTTCTTCTCCTCCTCCTGCTGC
AAGACTACAAACACCATTTCCTGTGGCTTCAATGGTCCCACCACACATTC
CTCATCATCATCGCCGTCAACTCGTTCGTACTGCCGTCGATGGTACAACC
CTCTCCGACGTAAGCCGTTCGATGAGCCTTCTCCTGACGTCCTCCGCCAC
TGGATCGACGCTGATCCTAATCCAATTTCATCTCAAGAGAGATTCTCGGT
CGTGTCATATAACATATTGGGAGATAAAAATGCTTTCAAACATAGAGATT
TATATCAAAATGTTCGGTATGAATACATGAAATGGAACCGTCGCAAAAGG
TTAATATGCCAAGAGTTGATTGGATTGAACCCGGATATTATCTGTATGCA
AGAGGTGGACAGGTATTTTGATATTCTGAATGTTATGGAGAAAACGGGAT
ATGCTGGTTGTTACAAGCGGCGCACTGGGGATAACGTTGATGGTTGTGCG
ATGTTTTGGAAAGCTGATAAGTTTCGGTTATTAGAGCAAACAAGCATTGA
ATTTAAAGAGTTTGGCCTTCGTGAAAATGTGGCACAACTTTCCGCTTTTG
AGGCAGATGCGCAACACAAAATCAAGAAGAGTACTGGTTGGTAACATACA
CGTTCTTTATAATCCAAACCGAGGGGAAGTGAAATTAGGTCAAATTTGTT
TTCTTTCCTCAAGGGCACAAATTGTTGCAGAGAAATGGGGTAATATCCCT
GTTGTGCTTGCTGGTGACTTCAATATCACTCTTCAAAGTGCAATTTACA
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