FC878238

Overview
NameFC878238
Unique NameFC878238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length863
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: NFYA_DICDI (Nuclear transcription factor Y subunit alpha OS=Dictyostelium discoideum GN=nfyA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.311e-17
Identity = 48/88 (54.55%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  590 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFL----NTKQLNDNAANSAEKGMNSGADGSKGSTN 841
            +YVNAKQY  IL+RR +RAK E E K+ K RK Y HESRHQHA+RR RGCGGRFL      K    NAAN+A    N  A  +  +T+
Sbjct:  231 LYVNAKQYNRILKRRAARAKLESENKLPKTRKAYQHESRHQHAIRRQRGCGGRFLTKADQAKLDAQNAANAAAAAANPNASSTSTTTS 318          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: HAP2_SCHPO (Transcriptional activator hap2 OS=Schizosaccharomyces pombe GN=hap2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.570e-15
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 2
Query:  590 VYVNAKQYRGILRRRQSRAKAELEKKVIKA-RKPYLHESRHQHAMRRARGCGGRFLNTKQLND-NAANSAEKGMNSGADGSKGSTNGTGSVDS 862
            +YVNAKQY  IL+RR++RAK E   + ++  +KPYLHESRH+HAMRR RG GGRFL   +++   A  +AE   N G+ G     N T + D+
Sbjct:   10 LYVNAKQYHRILKRREARAKLEERLRGVQTTKKPYLHESRHKHAMRRPRGPGGRFLTADKVSKLRAQEAAEAAANGGSTGD--DVNATNANDA 100          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: HAP2_YEAST (Transcriptional activator HAP2 OS=Saccharomyces cerevisiae GN=HAP2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.663e-15
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 2
Query:  593 YVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQLNDNAANSAEKGMNSGADGS 826
            YVNAKQY  IL+RR +RAK E + ++ + RKPYLHESRH+HAMRR RG GGRFL   ++   A  S + G +   D S
Sbjct:  162 YVNAKQYYRILKRRYARAKLEEKLRISRERKPYLHESRHKHAMRRPRGEGGRFLTAAEI--KAMKSKKSGASDDPDDS 237          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: NFYA_RAT (Nuclear transcription factor Y subunit alpha OS=Rattus norvegicus GN=Nfya PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.357e-14
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  590 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQ 766
            +YVNAKQY  IL+RRQ+RAK E E K+ K R+ YLHESRH+HAM R RG GGRF + K+
Sbjct:  259 LYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKE 317          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: NFYA_MOUSE (Nuclear transcription factor Y subunit alpha OS=Mus musculus GN=Nfya PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.357e-14
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  590 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQ 766
            +YVNAKQY  IL+RRQ+RAK E E K+ K R+ YLHESRH+HAM R RG GGRF + K+
Sbjct:  264 LYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKE 322          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: NFYA_HUMAN (Nuclear transcription factor Y subunit alpha OS=Homo sapiens GN=NFYA PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.357e-14
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  590 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQ 766
            +YVNAKQY  IL+RRQ+RAK E E K+ K R+ YLHESRH+HAM R RG GGRF + K+
Sbjct:  265 LYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKE 323          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: NFYA_BOVIN (Nuclear transcription factor Y subunit alpha OS=Bos taurus GN=NFYA PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.357e-14
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  590 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQ 766
            +YVNAKQY  IL+RRQ+RAK E E K+ K R+ YLHESRH+HAM R RG GGRF + K+
Sbjct:  259 LYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKE 317          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: HAP2_KLULA (Transcriptional activator HAP2 OS=Kluyveromyces lactis GN=HAP2 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.022e-14
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  593 YVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQL 769
            YVNAKQY  IL+RR +RAK E   K+ + R+PYLHESRH+HAMRR RG GGRFL   ++
Sbjct:  188 YVNAKQYYRILKRRYARAKLEENLKISRERRPYLHESRHKHAMRRPRGQGGRFLTAAEM 246          
The following BLAST results are available for this feature:
BLAST of FC878238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYA_DICDI1.311e-1754.55Nuclear transcription factor Y subunit alpha OS=Di... [more]
HAP2_SCHPO3.570e-1548.39Transcriptional activator hap2 OS=Schizosaccharomy... [more]
HAP2_YEAST4.663e-1553.85Transcriptional activator HAP2 OS=Saccharomyces ce... [more]
NFYA_RAT1.357e-1464.41Nuclear transcription factor Y subunit alpha OS=Ra... [more]
NFYA_MOUSE1.357e-1464.41Nuclear transcription factor Y subunit alpha OS=Mu... [more]
NFYA_HUMAN1.357e-1464.41Nuclear transcription factor Y subunit alpha OS=Ho... [more]
NFYA_BOVIN1.357e-1464.41Nuclear transcription factor Y subunit alpha OS=Bo... [more]
HAP2_KLULA3.022e-1462.71Transcriptional activator HAP2 OS=Kluyveromyces la... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878238 ID=FC878238; Name=FC878238; organism=Citrus clementina; type=EST; length=863bp
CTTAAGGTTGCAGAGAAATACAGACTAAACTAAAACGAATCAAAGTCGGT
GACTTTCTTTTAGAATCTCTATGCTCTGCTTCTCATCTCACAGTGCAGGA
TTAGGCTGTTTATACTATTAGAGGATTAGGTTGTGAATGATGCCGGCAAA
ACCTGATGAAAATCGGCAGTTAGACCGTGGTGCTCAGAGTGTCTCGCAAT
CAGCTATCTATTCCCAGCAGCCTTGGTGGAGTGGGACAGGAACTGGTGCC
TCCTTAGCTGAAGCAGCAGCTTCTAAATCTTCAAGGGAACAACCAAATGG
TTCTGTTGTAAATGGTGCCACCTATTCACAAGATGGGATTAATGGACAAG
AACATGCGCATCTCAAACATATTCCATCCTCAACACCTCTAACTATGGGC
GAACGCCTTGAACAAAATTCCCAAATGGAGCTAGTTGGTCACTCAATTGT
TTTGACATCATATCCATATACAGATCCACAACATGTTGGAGTAATTACCC
CCTATGTGCCACAAGTTATGATTCCTCCTCAGTTATATGGAATGCATCAA
GCAAGAATGCCTTTGCCTCTCGAAATGGAAGAGGAGCCTGTTTATGTGAA
TGCAAAACAGTATAGAGGTATTTTGAGACGAAGACAGTCGCGTGCTAAGG
CTGAGCTTGAAAAGAAAGTGATTAAAGCGAGAAAGCCTTATCTTCATGAG
TCCAGACATCAACATGCAATGAGAAGGGCTAGGGGTTGTGGAGGCCGTTT
TCTCAATACTAAGCAGCTCAATGACAATGCTGCAAACTCTGCAGAAAAAG
GTATGAATTCTGGTGCAGACGGTTCAAAGGGGTCCACCAATGGTACTGGT
TCTGTGGACTCAT
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