FC878242

Overview
NameFC878242
Unique NameFC878242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878242_ssr514 microsatellite FC878242_ssr514:514..523. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5702 contig Ccv1_Contig5702:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_BOVIN (Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 2.021e-78
Identity = 146/149 (97.99%), Postives = 148/149 (99.33%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG+ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV MMT+K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_ANAPL (Calmodulin OS=Anas platyrhynchos GN=CALM PE=2 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 2.021e-78
Identity = 146/149 (97.99%), Postives = 148/149 (99.33%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG+ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV MMT+K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_ELEEL (Calmodulin OS=Electrophorus electricus GN=calm PE=2 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 4.501e-78
Identity = 145/149 (97.32%), Postives = 148/149 (99.33%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA+KMKDTDSEEEIREAFRVFDKDGNG+ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV MMT+K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAKKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_RENRE (Calmodulin OS=Renilla reniformis PE=1 SV=2)

HSP 1 Score: 290.426 bits (742), Expect = 5.879e-78
Identity = 146/149 (97.99%), Postives = 148/149 (99.33%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG+GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG+GFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV MMTSK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGDGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMMTSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_EPIAK (Calmodulin OS=Epinephelus akaara GN=calm PE=2 SV=3)

HSP 1 Score: 290.426 bits (742), Expect = 5.879e-78
Identity = 145/149 (97.32%), Postives = 148/149 (99.33%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG+ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV +MT+K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQIMTAK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_MYXGL (Calmodulin OS=Myxine glutinosa PE=2 SV=3)

HSP 1 Score: 290.041 bits (741), Expect = 7.678e-78
Identity = 145/149 (97.32%), Postives = 148/149 (99.33%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV+ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG+ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV MMT+K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVNADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_SUBDO (Calmodulin OS=Suberites domuncula PE=2 SV=3)

HSP 1 Score: 288.886 bits (738), Expect = 1.711e-77
Identity = 145/149 (97.32%), Postives = 146/149 (97.99%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD DGNGTIDFPEFLTMMARKMK+TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD DGDGQVNYEEFV MMTSK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDTDGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADTDGDGQVNYEEFVGMMTSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_HALOK (Calmodulin OS=Halichondria okadai PE=2 SV=3)

HSP 1 Score: 287.73 bits (735), Expect = 3.811e-77
Identity = 144/149 (96.64%), Postives = 146/149 (97.99%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            M D L+EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK+TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV MMTSK
Sbjct:    1 MTDALSEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_PYTSP (Calmodulin OS=Pythium splendens PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 4.977e-77
Identity = 143/149 (95.97%), Postives = 146/149 (97.99%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI EAF+VFDKDGNGFISAAELRH+MTNLGEKLTDEEVDEMIREADIDGDGQ+NYEEFV MM SK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_PHYIN (Calmodulin OS=Phytophthora infestans GN=CMD1 PE=3 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 4.977e-77
Identity = 143/149 (95.97%), Postives = 146/149 (97.99%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI EAF+VFDKDGNGFISAAELRH+MTNLGEKLTDEEVDEMIREADIDGDGQ+NYEEFV MM SK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149
The following BLAST results are available for this feature:
BLAST of FC878242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 481
Match NameE-valueIdentityDescription
CALM_BOVIN2.021e-7897.99Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2[more]
CALM_ANAPL2.021e-7897.99Calmodulin OS=Anas platyrhynchos GN=CALM PE=2 SV=2[more]
CALM_ELEEL4.501e-7897.32Calmodulin OS=Electrophorus electricus GN=calm PE=... [more]
CALM_RENRE5.879e-7897.99Calmodulin OS=Renilla reniformis PE=1 SV=2[more]
CALM_EPIAK5.879e-7897.32Calmodulin OS=Epinephelus akaara GN=calm PE=2 SV=3[more]
CALM_MYXGL7.678e-7897.32Calmodulin OS=Myxine glutinosa PE=2 SV=3[more]
CALM_SUBDO1.711e-7797.32Calmodulin OS=Suberites domuncula PE=2 SV=3[more]
CALM_HALOK3.811e-7796.64Calmodulin OS=Halichondria okadai PE=2 SV=3[more]
CALM_PYTSP4.977e-7795.97Calmodulin OS=Pythium splendens PE=2 SV=1[more]
CALM_PHYIN4.977e-7795.97Calmodulin OS=Phytophthora infestans GN=CMD1 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878242 ID=FC878242; Name=FC878242; organism=Citrus clementina; type=EST; length=687bp
CGCTTACTGTGATTTTTTTAGTGTAGCTCCAGTTAATCCAAGTTAATCTA
CGATGGCGGATCAACTAACAGAAGAACAAATCGCCGAATTCAAAGAGGCG
TTTTCACTGTTCGACAAAGACGGCGATGGCACCATCACGACTAAAGAATT
GGGCACCGTTATGCGATCACTAGGACAGAACCCCACAGAAGCTGAGCTTC
AAGACATGATCAACGAAGTCGATGCGGACGGCAACGGCACGATAGACTTC
CCAGAGTTCCTCACAATGATGGCGCGCAAGATGAAGGACACCGACAGCGA
AGAGGAGATCCGCGAGGCGTTCCGCGTCTTCGACAAGGACGGCAACGGTT
TCATCTCGGCCGCCGAGCTGCGCCACGTCATGACCAACCTCGGCGAGAAG
CTCACGGACGAGGAGGTCGACGAGATGATCCGCGAGGCCGACATCGACGG
CGACGGACAGGTCAATTACGAGGAATTCGTCACCATGATGACGTCGAAGT
GAGCCGCCGGCTAGTGTGTGTGTAAAAAGCAGAGTATTTAAATATACATT
TTGTTTCATGACACACAATATTACCATCGTATTGGACCTGCATTTCTCTA
GTGTTTGCGATAAATTAAATATTGTCATCGTTTCAGTTAATTAATTATGA
TGTAACGTAATGCACGCGGGGCGCCAGCGGGGGGGGC
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