FC878242

Overview
NameFC878242
Unique NameFC878242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878242_ssr514 microsatellite FC878242_ssr514:514..523. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5702 contig Ccv1_Contig5702:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_OREMO (Calmodulin OS=Oreochromis mossambicus GN=calm PE=2 SV=3)

HSP 1 Score: 287.345 bits (734), Expect = 4.977e-77
Identity = 144/149 (96.64%), Postives = 147/149 (98.66%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG+ISAAELR+VMTNLGEKLTDE VDEMIREADIDGDGQVNYEEFV MMT+K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRYVMTNLGEKLTDEXVDEMIREADIDGDGQVNYEEFVQMMTAK 149          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_MACPY (Calmodulin OS=Macrocystis pyrifera PE=2 SV=3)

HSP 1 Score: 285.804 bits (730), Expect = 1.448e-76
Identity = 142/149 (95.30%), Postives = 146/149 (97.99%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI EAF+VFDKDGNGFISAAELRH+MTNLGEKLTDEEVDEMIREADIDGDGQ+NYEEFV MM +K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIIEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMAK 149          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_SACJA (Calmodulin OS=Saccharina japonica GN=cam PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.470e-76
Identity = 142/149 (95.30%), Postives = 145/149 (97.32%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI EAF+VFDKDGNGFISAAELRH+MTNLGEKLTDEEVDEMIREADIDGDGQ+NYEEFV MM SK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM2_BRAFL (Calmodulin-2 OS=Branchiostoma floridae GN=CAM2 PE=2 SV=4)

HSP 1 Score: 285.034 bits (728), Expect = 2.470e-76
Identity = 143/149 (95.97%), Postives = 145/149 (97.32%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDG+G ITTKELGTVMRSLGQNPTE ELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAF+VFDKDGNGFISAAELRHVMTN GEKLTDEEVDEMIREADIDGDGQVNYEEFV MMTSK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGNGNITTKELGTVMRSLGQNPTEGELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFKVFDKDGNGFISAAELRHVMTNPGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMMTSK 149          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALMA_ARBPU (Calmodulin-alpha (Fragment) OS=Arbacia punctulata PE=2 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.226e-75
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 478
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG+ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          

HSP 2 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  281 MKDTDSEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            M D  +EE+I   +EAF +FDKDG+G I+  EL  VM +LG+  T+ E+ +MI E D DG+G +++ EF+TMM  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_PLECO (Calmodulin OS=Pleurotus cornucopiae GN=CMD1 PE=1 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.601e-75
Identity = 139/149 (93.29%), Postives = 146/149 (97.99%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQL+EEQI+EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM+DTDSEEEI+EAF+VFDKDGNG+ISAAELRHVMTNLGEKLTD EVDEMIREADIDGDGQ+NYEEFV MM SK
Sbjct:    1 MADQLSEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDNEVDEMIREADIDGDGQINYEEFVKMMLSK 149          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_PLEOS (Calmodulin OS=Pleurotus ostreatus GN=CMD1 PE=2 SV=3)

HSP 1 Score: 281.952 bits (720), Expect = 2.091e-75
Identity = 138/149 (92.62%), Postives = 146/149 (97.99%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQL+EEQI+EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM+DTDSEEEI+EAF+VFDKDGNG+ISAAELRHVMTNLGEKLTD EVDEMIREAD+DGDGQ+NYEEFV MM SK
Sbjct:    1 MADQLSEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDNEVDEMIREADVDGDGQINYEEFVKMMLSK 149          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_PROMN (Calmodulin OS=Prorocentrum minimum PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 7.946e-75
Identity = 137/149 (91.95%), Postives = 146/149 (97.99%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL++MARKMKDTD+EEE+ EAF+VFD+DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV MM +K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMAK 149          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_PFIPI (Calmodulin OS=Pfiesteria piscicida PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 7.946e-75
Identity = 137/149 (91.95%), Postives = 146/149 (97.99%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL++MARKMKDTD+EEE+ EAF+VFD+DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV MM +K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMAK 149          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_KARMI (Calmodulin OS=Karlodinium micrum PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 7.946e-75
Identity = 137/149 (91.95%), Postives = 146/149 (97.99%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL++MARKMKDTD+EEE+ EAF+VFD+DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV MM +K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMAK 149          
The following BLAST results are available for this feature:
BLAST of FC878242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 481
Match NameE-valueIdentityDescription
CALM_OREMO4.977e-7796.64Calmodulin OS=Oreochromis mossambicus GN=calm PE=2... [more]
CALM_MACPY1.448e-7695.30Calmodulin OS=Macrocystis pyrifera PE=2 SV=3[more]
CALM_SACJA2.470e-7695.30Calmodulin OS=Saccharina japonica GN=cam PE=2 SV=1[more]
CALM2_BRAFL2.470e-7695.97Calmodulin-2 OS=Branchiostoma floridae GN=CAM2 PE=... [more]
CALMA_ARBPU1.226e-7599.30Calmodulin-alpha (Fragment) OS=Arbacia punctulata ... [more]
CALM_PLECO1.601e-7593.29Calmodulin OS=Pleurotus cornucopiae GN=CMD1 PE=1 S... [more]
CALM_PLEOS2.091e-7592.62Calmodulin OS=Pleurotus ostreatus GN=CMD1 PE=2 SV=... [more]
CALM_PROMN7.946e-7591.95Calmodulin OS=Prorocentrum minimum PE=2 SV=1[more]
CALM_PFIPI7.946e-7591.95Calmodulin OS=Pfiesteria piscicida PE=2 SV=1[more]
CALM_KARMI7.946e-7591.95Calmodulin OS=Karlodinium micrum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878242 ID=FC878242; Name=FC878242; organism=Citrus clementina; type=EST; length=687bp
CGCTTACTGTGATTTTTTTAGTGTAGCTCCAGTTAATCCAAGTTAATCTA
CGATGGCGGATCAACTAACAGAAGAACAAATCGCCGAATTCAAAGAGGCG
TTTTCACTGTTCGACAAAGACGGCGATGGCACCATCACGACTAAAGAATT
GGGCACCGTTATGCGATCACTAGGACAGAACCCCACAGAAGCTGAGCTTC
AAGACATGATCAACGAAGTCGATGCGGACGGCAACGGCACGATAGACTTC
CCAGAGTTCCTCACAATGATGGCGCGCAAGATGAAGGACACCGACAGCGA
AGAGGAGATCCGCGAGGCGTTCCGCGTCTTCGACAAGGACGGCAACGGTT
TCATCTCGGCCGCCGAGCTGCGCCACGTCATGACCAACCTCGGCGAGAAG
CTCACGGACGAGGAGGTCGACGAGATGATCCGCGAGGCCGACATCGACGG
CGACGGACAGGTCAATTACGAGGAATTCGTCACCATGATGACGTCGAAGT
GAGCCGCCGGCTAGTGTGTGTGTAAAAAGCAGAGTATTTAAATATACATT
TTGTTTCATGACACACAATATTACCATCGTATTGGACCTGCATTTCTCTA
GTGTTTGCGATAAATTAAATATTGTCATCGTTTCAGTTAATTAATTATGA
TGTAACGTAATGCACGCGGGGCGCCAGCGGGGGGGGC
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