FC878242

Overview
NameFC878242
Unique NameFC878242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878242_ssr514 microsatellite FC878242_ssr514:514..523. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5702 contig Ccv1_Contig5702:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_ALEFU (Calmodulin OS=Alexandrium fundyense PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 7.946e-75
Identity = 137/149 (91.95%), Postives = 146/149 (97.99%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL++MARKMKDTD+EEE+ EAF+VFD+DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV MM +K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMAK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_PHYPO (Calmodulin OS=Physarum polycephalum PE=2 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 1.770e-74
Identity = 138/149 (92.62%), Postives = 143/149 (95.97%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            M D LTEEQIAEFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM DTD+EEEIREAF+VFDKDGNGFISAAELRHVMTNLGEKL+DEEVDEMIREAD+DGDGQVNY+EFV MM SK
Sbjct:    1 MVDSLTEEQIAEFKEAFSLFDKDGDGNITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMADTDTEEEIREAFKVFDKDGNGFISAAELRHVMTNLGEKLSDEEVDEMIREADVDGDGQVNYDEFVKMMLSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_PAXIN (Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 1.770e-74
Identity = 136/149 (91.28%), Postives = 145/149 (97.32%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQL+EEQI+EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTE ELQDMINEVDADGNGTIDFPEFLTMMARKM+DTDSEEEI+EAF+VFDKDGNG+ISAAELRHVMTNLGEKLTD EVDEMIREAD+DGDGQ+NY+EFV MM SK
Sbjct:    1 MADQLSEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEGELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDTEVDEMIREADVDGDGQINYDEFVKMMLSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_HETTR (Calmodulin OS=Heterocapsa triquetra PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.770e-74
Identity = 136/149 (91.28%), Postives = 146/149 (97.99%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD+DGNGTIDFPEFL++MARKMKDTD+EEE+ EAF+VFD+DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV MM +K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDSDGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMAK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_ACHKL (Calmodulin OS=Achlya klebsiana GN=CMD1 PE=3 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 1.770e-74
Identity = 140/149 (93.96%), Postives = 144/149 (96.64%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEA SLFDKDGDGTITTKELGTVMRS+GQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI EAF+ FDKDGNGFISAAELRH+MTNLGEKLTDEEVDEMIREADIDGDGQ+NYEEFV MM SK
Sbjct:    1 MADQLTEEQIAEFKEAGSLFDKDGDGTITTKELGTVMRSVGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFQGFDKDGNGFISAAELRHMMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_AGABI (Calmodulin OS=Agaricus bisporus PE=1 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 3.019e-74
Identity = 135/149 (90.60%), Postives = 146/149 (97.99%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQL+EEQI+EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP++AEL+DMINEVDADGNGTIDFPEFLTMMARKM+DTDSEEEI+EAF+VFDKDGNG+ISAAELRHVMTNLGEKLTD EVDEMIREAD+DGDGQ+NYEEFV MM SK
Sbjct:    1 MADQLSEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPSQAELEDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDSEVDEMIREADVDGDGQINYEEFVKMMLSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_TRYCR (Calmodulin OS=Trypanosoma cruzi GN=CALA2 PE=3 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 5.150e-74
Identity = 136/149 (91.28%), Postives = 145/149 (97.32%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQL+ EQI+EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD DG+GTIDFPEFLT+MARKM+D+DSEEEI+EAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV MM SK
Sbjct:    1 MADQLSNEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEEIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_TRYBG (Calmodulin OS=Trypanosoma brucei gambiense PE=3 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 6.726e-74
Identity = 135/149 (90.60%), Postives = 145/149 (97.32%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQL+ EQI+EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD DG+GTIDFPEFLT+MARKM+D+DSEEEI+EAFRVFDKDGNGFISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV MM SK
Sbjct:    1 MADQLSNEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEEIKEAFRVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_TRYBB (Calmodulin OS=Trypanosoma brucei brucei PE=3 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 6.726e-74
Identity = 135/149 (90.60%), Postives = 145/149 (97.32%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQL+ EQI+EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD DG+GTIDFPEFLT+MARKM+D+DSEEEI+EAFRVFDKDGNGFISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV MM SK
Sbjct:    1 MADQLSNEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDQDGSGTIDFPEFLTLMARKMQDSDSEEEIKEAFRVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMSK 149
[Close]
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_TETPY (Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4)

HSP 1 Score: 276.174 bits (705), Expect = 1.147e-73
Identity = 136/149 (91.28%), Postives = 144/149 (96.64%), Query Frame = 2 
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL++MARKMKDTD+EEE+ EAF+VFD+DGNG ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDG +NYEEFV MM +K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMMMAK 149
The following BLAST results are available for this feature:
BLAST of FC878242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 481
Match NameE-valueIdentityDescription
CALM_ALEFU7.946e-7591.95Calmodulin OS=Alexandrium fundyense PE=2 SV=1[more]
CALM_PHYPO1.770e-7492.62Calmodulin OS=Physarum polycephalum PE=2 SV=3[more]
CALM_PAXIN1.770e-7491.28Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3[more]
CALM_HETTR1.770e-7491.28Calmodulin OS=Heterocapsa triquetra PE=2 SV=1[more]
CALM_ACHKL1.770e-7493.96Calmodulin OS=Achlya klebsiana GN=CMD1 PE=3 SV=3[more]
CALM_AGABI3.019e-7490.60Calmodulin OS=Agaricus bisporus PE=1 SV=2[more]
CALM_TRYCR5.150e-7491.28Calmodulin OS=Trypanosoma cruzi GN=CALA2 PE=3 SV=2[more]
CALM_TRYBG6.726e-7490.60Calmodulin OS=Trypanosoma brucei gambiense PE=3 SV... [more]
CALM_TRYBB6.726e-7490.60Calmodulin OS=Trypanosoma brucei brucei PE=3 SV=2[more]
CALM_TETPY1.147e-7391.28Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878242 ID=FC878242; Name=FC878242; organism=Citrus clementina; type=EST; length=687bp
CGCTTACTGTGATTTTTTTAGTGTAGCTCCAGTTAATCCAAGTTAATCTA
CGATGGCGGATCAACTAACAGAAGAACAAATCGCCGAATTCAAAGAGGCG
TTTTCACTGTTCGACAAAGACGGCGATGGCACCATCACGACTAAAGAATT
GGGCACCGTTATGCGATCACTAGGACAGAACCCCACAGAAGCTGAGCTTC
AAGACATGATCAACGAAGTCGATGCGGACGGCAACGGCACGATAGACTTC
CCAGAGTTCCTCACAATGATGGCGCGCAAGATGAAGGACACCGACAGCGA
AGAGGAGATCCGCGAGGCGTTCCGCGTCTTCGACAAGGACGGCAACGGTT
TCATCTCGGCCGCCGAGCTGCGCCACGTCATGACCAACCTCGGCGAGAAG
CTCACGGACGAGGAGGTCGACGAGATGATCCGCGAGGCCGACATCGACGG
CGACGGACAGGTCAATTACGAGGAATTCGTCACCATGATGACGTCGAAGT
GAGCCGCCGGCTAGTGTGTGTGTAAAAAGCAGAGTATTTAAATATACATT
TTGTTTCATGACACACAATATTACCATCGTATTGGACCTGCATTTCTCTA
GTGTTTGCGATAAATTAAATATTGTCATCGTTTCAGTTAATTAATTATGA
TGTAACGTAATGCACGCGGGGCGCCAGCGGGGGGGGC
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