FC878242

Overview
NameFC878242
Unique NameFC878242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878242_ssr514 microsatellite FC878242_ssr514:514..523. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5702 contig Ccv1_Contig5702:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM3_PETHY (Calmodulin-related protein OS=Petunia hybrida GN=CAM53 PE=2 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 1.269e-72
Identity = 133/146 (91.10%), Postives = 142/146 (97.26%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 490
            MADQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M
Sbjct:    1 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 146          

HSP 2 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  269 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MA ++ D D   E +EAF +FDKDG+G I+  EL  VM +LG+  T+ E+ +MI E D DG+G +++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76          

HSP 3 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG 349
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M    +    EE  R       +  NG
Sbjct:   77 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMANRRRRRIEESKRSVNSNISRSNNG 172          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_PARTE (Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 3.691e-72
Identity = 133/149 (89.26%), Postives = 143/149 (95.97%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MA+QLTEEQIAEFKEAF+LFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL++MARKMK+ DSEEE+ EAF+VFD+DGNG ISAAELRHVMTNLGEKLTD+EVDEMIREADIDGDG +NYEEFV MM SK
Sbjct:    1 MAEQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMVSK 149          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_ORYLA (Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm1 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.691e-72
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 2
Query:   74 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 481
            EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG+ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV
Sbjct:    1 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 136          

HSP 2 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  305 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            E +EAF +FDKDG+G I+  EL  VM +LG+  T+ E+ +MI E D DG+G +++ EF+TMM  K
Sbjct:    5 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 69          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM1_SOLTU (Calmodulin-1 OS=Solanum tuberosum GN=PCM1 PE=1 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 3.691e-72
Identity = 135/149 (90.60%), Postives = 142/149 (95.30%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MA+QLTEEQIAEFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMI+E DAD NGTIDFPEFL +MARKMKDTDSEEE++EAF+VFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV MM +K
Sbjct:    1 MAEQLTEEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEADADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVRMMLAK 149          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_MALDO (Calmodulin OS=Malus domestica GN=CAM PE=3 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 4.820e-72
Identity = 133/149 (89.26%), Postives = 143/149 (95.97%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE L +MARKMKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:    1 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEPLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_CHLRE (Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 4.820e-72
Identity = 132/146 (90.41%), Postives = 143/146 (97.95%), Query Frame = 2
Query:   59 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 496
            +QLTEEQIAEFKEAF+LFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI+EVDADGNGTIDFPEFL +MARKMK+TD E+E+REAF+VFDKDGNGFISAAELRHVMTNLGEKL++EEVDEMIREAD+DGDGQVNYEEFV MMTS
Sbjct:    6 EQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLMLMARKMKETDHEDELREAFKVFDKDGNGFISAAELRHVMTNLGEKLSEEEVDEMIREADVDGDGQVNYEEFVRMMTS 151          

HSP 2 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 2
Query:   86 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKD 289
            E +EAF +FDKDG+G I+  EL  VM +LG+  +E E+ +MI E D DG+G +++ EF+ MM     D
Sbjct:   88 ELREAFKVFDKDGNGFISAAELRHVMTNLGEKLSEEEVDEMIREADVDGDGQVNYEEFVRMMTSGATD 155          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALL3_RAT (Calmodulin-like protein 3 OS=Rattus norvegicus GN=Calml3 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 4.820e-72
Identity = 132/149 (88.59%), Postives = 142/149 (95.30%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MA+QLTEEQIAEFKEAFSLFDKDGDG ITT+ELGTVMRSLGQNPTEAELQDM+NE+D DGNGT+DFPEFLTMM+RKMKDTDSEEEIREAFRVFDKDGNGF+SAAELRHVMT LGEKL+DEEVDEMI+ AD DGDGQVNYEEFV M+ SK
Sbjct:    1 MANQLTEEQIAEFKEAFSLFDKDGDGCITTQELGTVMRSLGQNPTEAELQDMVNEIDKDGNGTVDFPEFLTMMSRKMKDTDSEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIQAADTDGDGQVNYEEFVHMLVSK 149          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALL3_MOUSE (Calmodulin-like protein 3 OS=Mus musculus GN=Calml3 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 4.820e-72
Identity = 132/149 (88.59%), Postives = 142/149 (95.30%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MADQLTEEQIAEFKEAFSLFDKDGDG+ITT+ELGTVMRSLGQNPTEAELQ M+NE+D DGNGT+DFPEFLTMM+RKMKDTDSEEEIREAFRVFDKDGNGF+SAAELRHVMT LGEKL+DEEVDEMI+ AD DGDGQVNYEEFV M+ SK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGSITTQELGTVMRSLGQNPTEAELQGMVNEIDKDGNGTVDFPEFLTMMSRKMKDTDSEEEIREAFRVFDKDGNGFVSAAELRHVMTKLGEKLSDEEVDEMIQAADTDGDGQVNYEEFVHMLVSK 149          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_PLAFA (Calmodulin OS=Plasmodium falciparum PE=3 SV=4)

HSP 1 Score: 270.011 bits (689), Expect = 8.222e-72
Identity = 131/149 (87.92%), Postives = 144/149 (96.64%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MAD+LTEEQI+EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE+D DGNGTIDFPEFLT+MARK+KDTD+EEE+ EAFRVFD+DG+G+ISA ELRHVMTNLGEKLT+EEVDEMIREADIDGDGQ+NYEEFV MM +K
Sbjct:    1 MADKLTEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEIDTDGNGTIDFPEFLTLMARKLKDTDTEEELIEAFRVFDRDGDGYISADELRHVMTNLGEKLTNEEVDEMIREADIDGDGQINYEEFVKMMIAK 149          
BLAST of FC878242 vs. ExPASy Swiss-Prot
Match: CALM_PLAF7 (Calmodulin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0323 PE=3 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 8.222e-72
Identity = 131/149 (87.92%), Postives = 144/149 (96.64%), Query Frame = 2
Query:   53 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 499
            MAD+LTEEQI+EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE+D DGNGTIDFPEFLT+MARK+KDTD+EEE+ EAFRVFD+DG+G+ISA ELRHVMTNLGEKLT+EEVDEMIREADIDGDGQ+NYEEFV MM +K
Sbjct:    1 MADKLTEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEIDTDGNGTIDFPEFLTLMARKLKDTDTEEELIEAFRVFDRDGDGYISADELRHVMTNLGEKLTNEEVDEMIREADIDGDGQINYEEFVKMMIAK 149          
The following BLAST results are available for this feature:
BLAST of FC878242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 481
Match NameE-valueIdentityDescription
CALM3_PETHY1.269e-7291.10Calmodulin-related protein OS=Petunia hybrida GN=C... [more]
CALM_PARTE3.691e-7289.26Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 S... [more]
CALM_ORYLA3.691e-7299.26Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm... [more]
CALM1_SOLTU3.691e-7290.60Calmodulin-1 OS=Solanum tuberosum GN=PCM1 PE=1 SV=... [more]
CALM_MALDO4.820e-7289.26Calmodulin OS=Malus domestica GN=CAM PE=3 SV=2[more]
CALM_CHLRE4.820e-7290.41Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2[more]
CALL3_RAT4.820e-7288.59Calmodulin-like protein 3 OS=Rattus norvegicus GN=... [more]
CALL3_MOUSE4.820e-7288.59Calmodulin-like protein 3 OS=Mus musculus GN=Calml... [more]
CALM_PLAFA8.222e-7287.92Calmodulin OS=Plasmodium falciparum PE=3 SV=4[more]
CALM_PLAF78.222e-7287.92Calmodulin OS=Plasmodium falciparum (isolate 3D7) ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878242 ID=FC878242; Name=FC878242; organism=Citrus clementina; type=EST; length=687bp
CGCTTACTGTGATTTTTTTAGTGTAGCTCCAGTTAATCCAAGTTAATCTA
CGATGGCGGATCAACTAACAGAAGAACAAATCGCCGAATTCAAAGAGGCG
TTTTCACTGTTCGACAAAGACGGCGATGGCACCATCACGACTAAAGAATT
GGGCACCGTTATGCGATCACTAGGACAGAACCCCACAGAAGCTGAGCTTC
AAGACATGATCAACGAAGTCGATGCGGACGGCAACGGCACGATAGACTTC
CCAGAGTTCCTCACAATGATGGCGCGCAAGATGAAGGACACCGACAGCGA
AGAGGAGATCCGCGAGGCGTTCCGCGTCTTCGACAAGGACGGCAACGGTT
TCATCTCGGCCGCCGAGCTGCGCCACGTCATGACCAACCTCGGCGAGAAG
CTCACGGACGAGGAGGTCGACGAGATGATCCGCGAGGCCGACATCGACGG
CGACGGACAGGTCAATTACGAGGAATTCGTCACCATGATGACGTCGAAGT
GAGCCGCCGGCTAGTGTGTGTGTAAAAAGCAGAGTATTTAAATATACATT
TTGTTTCATGACACACAATATTACCATCGTATTGGACCTGCATTTCTCTA
GTGTTTGCGATAAATTAAATATTGTCATCGTTTCAGTTAATTAATTATGA
TGTAACGTAATGCACGCGGGGCGCCAGCGGGGGGGGC
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