FC878244

Overview
NameFC878244
Unique NameFC878244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878244 vs. ExPASy Swiss-Prot
Match: MMA1_MYCBO (Methoxy mycolic acid synthase 1 OS=Mycobacterium bovis GN=mma1 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 53/195 (27.18%), Postives = 89/195 (45.64%), Query Frame = 1 
Query:  271 YELPTSFFKLVLGKYFKYSCCYFSDASKTLEDAEKAMLELYCERSRLEDGHTVLDVGCGWGSLSLYIAQTYSNCKITGICNSKTQKEFIEEQCRVLELQ-NVEIIVADISTFEMEASYDRIYSIEMFEHMK--NYQNLLKKISKWMKEDTLLFVH-------HFCHKT-FAYHFEDTNDDDWITKYFFTGGTMPS 822
            Y++   FF L L   + Y+C YF     TLE+A+ A ++L  ++  LE G T+LDVGCGWG   +   + Y +  + G+  S+   E  +++   +  Q   E  +      E E + DRI S E F+  K   Y    ++    + +D  + +H        + H+   A    D     ++ +  F GG +PS
Sbjct:   15 YDISDDFFALFLDPTWVYTCAYFERDDMTLEEAQLAKVDLALDKLNLEPGMTLLDVGCGWGGALVRAVEKY-DVNVIGLTLSRNHYERSKDRLAAIGTQRRAEARLQGWE--EFEENVDRIVSFEAFDAFKKERYLTFFERSYDILPDDGRMLLHSLFTYDRRWLHEQGIALTMSDLRFLKFLRESIFPGGELPS 206
The following BLAST results are available for this feature:
BLAST of FC878244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MMA1_MYCBO3.824e-1227.18Methoxy mycolic acid synthase 1 OS=Mycobacterium b... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DE04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878244 ID=FC878244; Name=FC878244; organism=Citrus clementina; type=EST; length=881bp
CTGCGGCACAGAAATAAGAGAGAACTGCAAATGGAGGGGATAATGCACGC
AGCTTACGATGCAACGGTGCGGCTGATGCTGTCATCACTTGAACGGAACT
TGCTACCGGACGCCGTCATCAGGAGGCTCAGCCGTTTGCTCTTGGGAGGC
CGACTTCGCTCCGGCTACAAACCTTCAGCTGAGCTCCAACTCAGTGACCT
CCTCCAGTTCGCACATTCACTGAGAGAGATGCCTATAGCCATCCAGACGG
ACAAGGCGAAAGAGCAGCATTATGAACTGCCAACCTCTTTCTTCAAGTTG
GTTCTTGGTAAATATTTCAAATACAGCTGCTGTTACTTCTCTGATGCATC
AAAAACCTTAGAGGATGCTGAGAAAGCAATGTTGGAGCTGTACTGTGAGA
GGTCAAGGTTGGAAGACGGTCACACTGTTCTTGATGTTGGATGTGGCTGG
GGGTCACTGTCCCTGTACATTGCTCAAACGTATAGTAACTGCAAGATTAC
TGGGATATGCAATTCAAAAACTCAGAAAGAATTTATTGAGGAGCAGTGTC
GGGTTCTTGAGCTTCAAAACGTGGAGATAATTGTTGCAGATATCAGCACA
TTTGAAATGGAAGCATCATATGACCGAATATACTCCATTGAAATGTTTGA
GCATATGAAGAACTATCAGAATCTTCTCAAGAAGATATCAAAGTGGATGA
AAGAAGACACCCTTCTTTTTGTTCATCATTTCTGCCACAAAACATTTGCC
TATCACTTTGAGGACACAAATGATGATGATTGGATTACAAAATACTTCTT
CACCGGTGGAACAATGCCTTCAGCTAATCTACTTCTTTATTTCCAGGACG
ATGTTTCTGTTGTTGATCACTGGCTTGTGAA
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