FC878247

Overview
NameFC878247
Unique NameFC878247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length838
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878247_ssr461 microsatellite FC878247_ssr461:461..475. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878247_ssr142 microsatellite FC878247_ssr142:142..161. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP12_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 12 OS=Oryza sativa subsp. japonica GN=SAP12 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.852e-23
Identity = 60/144 (41.67%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  326 LCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQ---SSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAA----NRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            LC + CGFFGS  T N+CSKC+RD  LKA     SSS+  A   T             D+++   PAT                    S AA    NRC+ CR++VGL GF+CRCG  FC THR+ ++HAC+FDFK+  +E IA
Sbjct:   80 LCSSGCGFFGSKETNNMCSKCYRD-HLKATSPLFSSSSSPATAST------------TDITVPIAPATTAPTPSLKGKEEEATAAASSSAAAAAKPNRCVACRKKVGLLGFECRCGGTFCSTHRHADKHACTFDFKKSDREKIA 210          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP4_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Oryza sativa subsp. japonica GN=SAP4 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.703e-22
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = 2
Query:  299 EEHRCQAPR---LCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAA--------NRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            +E  CQ P    LC+NNCGFFGS  T N+CSKC +++ +K +Q+  A  +++ +++          V  S     A                    +  A         NRC TCR+RVGLTGF CRCG+++C  HRY ++H C FD++   ++ IA
Sbjct:    4 KEAGCQQPEGPILCINNCGFFGSAATMNMCSKCHKEMIMKEEQAKLAASSID-SIVNGCDGGKEHIVAASGSTAVAVAQVEAKTLVVQPTDVAGTSEEVAVVPKVKEGPNRCATCRKRVGLTGFNCRCGNMYCALHRYSDKHECQFDYRTAARDAIA 159          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP8_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.470e-22
Identity = 55/160 (34.38%), Postives = 83/160 (51.88%), Query Frame = 2
Query:  299 EEHRCQAPR---LCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALN----------QTLIXXXXXXXXXXVDL-SLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            +E  CQ P    LC+NNCGFFGS  T N+CSKC +++ +K +Q+  A  +++          + +I          V++ +L  +PA                         NRC TCR+RVGLTGF CRCG+++C  HRY ++H C FD++   ++ IA
Sbjct:    4 KETGCQQPEGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVNGGDSGKEPIIAGHAEVAVAQVEVKTLVAQPAE------IAGPSEGVTVNPKGREGPNRCSTCRKRVGLTGFNCRCGNLYCAMHRYSDKHDCQFDYRTAARDAIA 157          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP8_ORYSI (Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. indica GN=SAP8 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.470e-22
Identity = 55/160 (34.38%), Postives = 83/160 (51.88%), Query Frame = 2
Query:  299 EEHRCQAPR---LCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALN----------QTLIXXXXXXXXXXVDL-SLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            +E  CQ P    LC+NNCGFFGS  T N+CSKC +++ +K +Q+  A  +++          + +I          V++ +L  +PA                         NRC TCR+RVGLTGF CRCG+++C  HRY ++H C FD++   ++ IA
Sbjct:    4 KETGCQQPEGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVNGGDSGKEPIIAGHAEVAVAQVEVKTLVAQPAE------IAGPSEGVTVNPKGREGPNRCSTCRKRVGLTGFNCRCGNLYCAMHRYSDKHDCQFDYRTAARDAIA 157          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP11_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 11 OS=Oryza sativa subsp. japonica GN=SAP11 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.470e-22
Identity = 55/151 (36.42%), Postives = 76/151 (50.33%), Query Frame = 2
Query:  290 KMAEEHRCQAPR--LCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            K+ E    +AP   LC N+CGF G+P T NLC  CF      +  SSSA  + + T +            +      A                    +S++ NRC +CRRRVGLTGF+CRCG ++CG HRY ++H CSFD+K   ++ IA
Sbjct:    7 KVEEPTELRAPEMTLCANSCGFPGNPATNNLCQNCFLAASASSS-SSSAAASPSTTSLPVFPVVEKPRQAVQSSAAAAVALVVERPTAGPVESSSKASRSSSVNRCHSCRRRVGLTGFRCRCGELYCGAHRYSDRHDCSFDYKSAARDAIA 156          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP3_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Oryza sativa subsp. japonica GN=SAP3 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.441e-21
Identity = 60/168 (35.71%), Postives = 83/168 (49.40%), Query Frame = 2
Query:  269 ENIVYR---LKMAEEHRCQA--PRLCVNNCGFFGSPTTQNLCSKCFRD------LQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTA-ANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            E IV R   +KM+ E +  A  P LC + CGF+G+P T ++CS C+R         +    SSS   A   T+           V       P+ +                  +  A ANRC +C+++VGL GF CRCG+ +CGTHRYPE+HAC FDFK   ++ IA
Sbjct:  180 ETIVLRANIIKMSSEQQASAGQPVLCASGCGFYGNPATLDMCSVCYRQHCLLNGATMATGPSSSVAAASAATVATGAVTSDSCSV-------PSAEVNGAAFSSKNNPEPATVVEKKAPANRCASCKKKVGLLGFACRCGATYCGTHRYPEKHACGFDFKGASRDAIA 340          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. japonica GN=SAP1 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.882e-21
Identity = 54/149 (36.24%), Postives = 77/149 (51.68%), Query Frame = 2
Query:  302 EHRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA-DKP 745
            E R     LC N+CGF G+P TQNLC  CF    L A  S+S+  +L+  ++          +   +  +                      +++A NRC  CR+RVGLTGF+CRCG +FCG HRY ++H CS+D+K   ++ IA D P
Sbjct:   13 ELRAPEITLCANSCGFPGNPATQNLCQNCF----LAATASTSSPSSLSSPVLDKQPPRPAAPL---VEPQAPLPPPVEEMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNP 154          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSI (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. indica GN=SAP1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.882e-21
Identity = 54/149 (36.24%), Postives = 77/149 (51.68%), Query Frame = 2
Query:  302 EHRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA-DKP 745
            E R     LC N+CGF G+P TQNLC  CF    L A  S+S+  +L+  ++          +   +  +                      +++A NRC  CR+RVGLTGF+CRCG +FCG HRY ++H CS+D+K   ++ IA D P
Sbjct:   13 ELRAPEITLCANSCGFPGNPATQNLCQNCF----LAATASTSSPSSLSSPVLDKQPPRPAAPL---VEPQAPLPPPVEEMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNP 154          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP7_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Oryza sativa subsp. japonica GN=SAP7 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.342e-21
Identity = 55/154 (35.71%), Postives = 72/154 (46.75%), Query Frame = 2
Query:  326 LCVNNCGFFGSPTTQNLCSKCFR-----------------DLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            +CV  CGFFGS  T N+CS+C+R                 DL+L     ++ K A    ++             +  E+PA                     +TA NRC  CR++VGLTGFKCRCG  FCG HR+ + H C FD+K  GKE IA
Sbjct:   23 MCVTGCGFFGSEATNNMCSRCYREHSADNDAVEEAAAANSDLELVGVAETTTKKARMSAVVPVAVASSSS----AAAEQPAAKA------------------ATAPNRCAACRKKVGLTGFKCRCGGNFCGGHRHADAHGCGFDYKSAGKEQIA 154          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP5_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Arabidopsis thaliana GN=SAP5 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 52/149 (34.90%), Postives = 68/149 (45.64%), Query Frame = 2
Query:  290 KMAEEHRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            K+ E        LC NNCG   +P T N+C KCF      A   S+A   +    I            ++LR  PA                         NRC  CR++VGLTGF+CRCG +FC  HRY ++H CS+D+K  G+E IA
Sbjct:   13 KVLETLTTTTTTLCTNNCGVTANPATNNMCQKCFN-----ASLVSAAAGVVESGSILKRSAR-----SVNLRSSPAK-----VVIRPREIDAVKKRDQQIVNRCSGCRKKVGLTGFRCRCGELFCSEHRYSDRHDCSYDYKTAGREAIA 146          
The following BLAST results are available for this feature:
BLAST of FC878247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SAP12_ORYSJ5.852e-2341.67Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP4_ORYSJ1.703e-2234.39Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP8_ORYSJ6.470e-2234.38Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP8_ORYSI6.470e-2234.38Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP11_ORYSJ6.470e-2236.42Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP3_ORYSJ1.441e-2135.71Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ORYSJ1.882e-2136.24Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ORYSI1.882e-2136.24Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP7_ORYSJ9.342e-2135.71Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP5_ARATH1.142e-1834.90Zinc finger A20 and AN1 domain-containing stress-a... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA96BB01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96BB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878247 ID=FC878247; Name=FC878247; organism=Citrus clementina; type=EST; length=838bp
AGAAGGTGTTGGGAATCTGCAGTCAGGGCCGGGAATCCTCCCCTCAAAAG
GAAAAGAAGAGTTTCTTTTTCCGCGGAGCTGCCTTCCTTCATAAAAAGAG
AAACCCTGCTTTCCTTTCTTTGCCAAAACTCCTTTGCCTTCCTTTCTTTC
TTTCTTTCTTTCCAAAATCCCAATTGCCAAACAGAAGATAAAGACTAATG
CTCCTTATATATTTCCTTTCCAGTCGTCCCTCTTTTGAAAAATCAATCAA
TTTCAGCAAATTATTCCTGAAAATATTGTTTACAGGTTGAAGATGGCGGA
AGAGCACAGATGTCAAGCACCCCGTTTGTGCGTGAACAACTGCGGATTTT
TCGGGAGCCCAACAACTCAAAATCTCTGCTCCAAATGTTTTCGCGATCTT
CAGTTGAAAGCACAACAATCTTCCTCGGCCAAACACGCCCTTAACCAAAC
CCTGATTTCTTCGTCGTCGTCGTCGCCGTCGCCGTCGGTTGATTTGTCTC
TGCGCGAGAGACCGGCGACGGATGTGGAGGTAGCGGCAGAGGCGGAGAAG
CCGCCGGCTGAGGTGGCCGCTCCGGTGCAGTCGACGGCGGCGAACAGGTG
CATAACTTGCAGGAGGCGCGTGGGGCTCACGGGGTTCAAGTGCAGGTGCG
GGTCGGTGTTCTGCGGGACCCACAGGTACCCGGAGCAGCACGCGTGCTCG
TTCGATTTCAAAGAGATGGGCAAAGAGCTGATTGCAGACAAACCCAAGAC
ACAAGAATGGGCAATGAAAGATAGGGATGCTGAGGCAGAGCCATTAAACC
TTTAATTGGTGGACTGAGGACACAAACCACCGGTGATT
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