FC878247

Overview
NameFC878247
Unique NameFC878247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length838
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP2_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 2 OS=Oryza sativa subsp. japonica GN=SAP2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.668e-18
Identity = 49/151 (32.45%), Postives = 69/151 (45.70%), Query Frame = 2
Query:  287 LKMAEEHRCQAPRL-CVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            ++   E + + P L C N CGFFGS  T+ LCSKC+R   +    + SA     +             VD      P                      +   +RC  C R VGL GF+CRCG+VFCG HRY ++H C +D++  G++ IA
Sbjct:    1 MEQGSERQDERPPLPCANGCGFFGSADTRGLCSKCYRQTVMSQASAPSAAAQSAEHDQVVLPAPEGVPVDEGAMPPPPPRHG-----------------AKTKSRCAACGRSVGLMGFECRCGAVFCGAHRYSDRHDCGYDYRGAGRDAIA 134          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP14_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 14 OS=Oryza sativa subsp. japonica GN=SAP14 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.267e-17
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 2
Query:  590 ANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            ANRC TCRR+VGLTGFKCRCG  FCG HRY ++H C FD+K  G+ELIA
Sbjct:  174 ANRCATCRRKVGLTGFKCRCGGTFCGGHRYADEHGCGFDYKSSGRELIA 222          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP10_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Arabidopsis thaliana GN=SAP10 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.016e-15
Identity = 45/136 (33.09%), Postives = 62/136 (45.59%), Query Frame = 2
Query:  329 CVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLIXXXXXXXXXXVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            C   CG +G+    NLCS C++   L   Q S A                       LR  P T+                  +     RC  C+R+VG+ GFKCRCG +FCG+HRYPE+H+C FD+K+ G+  +A
Sbjct:   10 CEGGCGLYGTRVNNNLCSLCYKKSVL---QHSPA-----------------------LRFEPETEQSQCCPPTNSPAVEE---EPVKKRRCGICKRKVGMLGFKCRCGHMFCGSHRYPEEHSCPFDYKQSGRLALA 116          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: SAP15_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 15 OS=Oryza sativa subsp. japonica GN=SAP15 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.887e-13
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 2
Query:  593 NRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELIA 736
            NRC  CR+RVGLTGF+CRCG +FC  HR+ E H CSFD+K  G+E IA
Sbjct:  113 NRCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIA 160          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: ZFAN6_RAT (AN1-type zinc finger protein 6 OS=Rattus norvegicus GN=Zfand6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.927e-12
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 2
Query:  593 NRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELI 733
            NRC  CR++VGLTGF+CRCG+V+CG HRY + H CS+++K    E I
Sbjct:  162 NRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKI 208          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: ZFAN6_PONAB (AN1-type zinc finger protein 6 OS=Pongo abelii GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.927e-12
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 2
Query:  593 NRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELI 733
            NRC  CR++VGLTGF+CRCG+V+CG HRY + H CS+++K    E I
Sbjct:  147 NRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKI 193          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: ZFAN6_MOUSE (AN1-type zinc finger protein 6 OS=Mus musculus GN=Zfand6 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.927e-12
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 2
Query:  593 NRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELI 733
            NRC  CR++VGLTGF+CRCG+V+CG HRY + H CS+++K    E I
Sbjct:  162 NRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKI 208          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: ZFAN6_HUMAN (AN1-type zinc finger protein 6 OS=Homo sapiens GN=ZFAND6 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.927e-12
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 2
Query:  593 NRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELI 733
            NRC  CR++VGLTGF+CRCG+V+CG HRY + H CS+++K    E I
Sbjct:  147 NRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKI 193          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: ZFAN6_BOVIN (AN1-type zinc finger protein 6 OS=Bos taurus GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.927e-12
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 2
Query:  593 NRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKELI 733
            NRC  CR++VGLTGF+CRCG+V+CG HRY + H CS+++K    E I
Sbjct:  147 NRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKI 193          
BLAST of FC878247 vs. ExPASy Swiss-Prot
Match: ZFAN5_MOUSE (AN1-type zinc finger protein 5 OS=Mus musculus GN=Zfand5 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 2
Query:  593 NRCITCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFK 712
            NRC  CR++VGLTGF CRCG++FCG HRY ++H C +D+K
Sbjct:  152 NRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYK 191          
The following BLAST results are available for this feature:
BLAST of FC878247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SAP2_ORYSJ9.668e-1832.45Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP14_ORYSJ6.267e-1771.43Zinc finger AN1 domain-containing stress-associate... [more]
SAP10_ARATH2.016e-1533.09Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP15_ORYSJ1.887e-1364.58Zinc finger AN1 domain-containing stress-associate... [more]
ZFAN6_RAT7.927e-1257.45AN1-type zinc finger protein 6 OS=Rattus norvegicu... [more]
ZFAN6_PONAB7.927e-1257.45AN1-type zinc finger protein 6 OS=Pongo abelii GN=... [more]
ZFAN6_MOUSE7.927e-1257.45AN1-type zinc finger protein 6 OS=Mus musculus GN=... [more]
ZFAN6_HUMAN7.927e-1257.45AN1-type zinc finger protein 6 OS=Homo sapiens GN=... [more]
ZFAN6_BOVIN7.927e-1257.45AN1-type zinc finger protein 6 OS=Bos taurus GN=ZF... [more]
ZFAN5_MOUSE1.352e-1162.50AN1-type zinc finger protein 5 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA96BB01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA96BB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878247 ID=FC878247; Name=FC878247; organism=Citrus clementina; type=EST; length=838bp
AGAAGGTGTTGGGAATCTGCAGTCAGGGCCGGGAATCCTCCCCTCAAAAG
GAAAAGAAGAGTTTCTTTTTCCGCGGAGCTGCCTTCCTTCATAAAAAGAG
AAACCCTGCTTTCCTTTCTTTGCCAAAACTCCTTTGCCTTCCTTTCTTTC
TTTCTTTCTTTCCAAAATCCCAATTGCCAAACAGAAGATAAAGACTAATG
CTCCTTATATATTTCCTTTCCAGTCGTCCCTCTTTTGAAAAATCAATCAA
TTTCAGCAAATTATTCCTGAAAATATTGTTTACAGGTTGAAGATGGCGGA
AGAGCACAGATGTCAAGCACCCCGTTTGTGCGTGAACAACTGCGGATTTT
TCGGGAGCCCAACAACTCAAAATCTCTGCTCCAAATGTTTTCGCGATCTT
CAGTTGAAAGCACAACAATCTTCCTCGGCCAAACACGCCCTTAACCAAAC
CCTGATTTCTTCGTCGTCGTCGTCGCCGTCGCCGTCGGTTGATTTGTCTC
TGCGCGAGAGACCGGCGACGGATGTGGAGGTAGCGGCAGAGGCGGAGAAG
CCGCCGGCTGAGGTGGCCGCTCCGGTGCAGTCGACGGCGGCGAACAGGTG
CATAACTTGCAGGAGGCGCGTGGGGCTCACGGGGTTCAAGTGCAGGTGCG
GGTCGGTGTTCTGCGGGACCCACAGGTACCCGGAGCAGCACGCGTGCTCG
TTCGATTTCAAAGAGATGGGCAAAGAGCTGATTGCAGACAAACCCAAGAC
ACAAGAATGGGCAATGAAAGATAGGGATGCTGAGGCAGAGCCATTAAACC
TTTAATTGGTGGACTGAGGACACAAACCACCGGTGATT
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