FC878282

Overview
NameFC878282
Unique NameFC878282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878282_ssr83 microsatellite FC878282_ssr83:83..94. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878282_ssr581 microsatellite FC878282_ssr581:581..592. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5942 contig Ccv1_Contig5942:145..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.062e-34
Identity = 69/95 (72.63%), Postives = 77/95 (81.05%), Query Frame = 3
Query:  141 PPPFLSKTYDMVDDLATDSIVSWSPTS-NSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRK 422
            P PFL+KTY +VDD ATD IVSW     ++FVVW PPEFARD+LP YFKHNNFSSFVRQLNTYGFRKV P+RWEFANE F +G+K LL  I RRK
Sbjct:   22 PAPFLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLTEIHRRK 116          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.694e-34
Identity = 65/94 (69.15%), Postives = 76/94 (80.85%), Query Frame = 3
Query:  141 PPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRK 422
            P PFL+KTY +V+D   D ++SW+    +F+VW P EFARDLLPKYFKHNNFSSFVRQLNTYGFRKV PDRWEF+N+ F RG+K LLR I RRK
Sbjct:   57 PTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRK 150          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.694e-34
Identity = 62/94 (65.96%), Postives = 80/94 (85.11%), Query Frame = 3
Query:  141 PPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRK 422
            P PFL+KT+++V+D + D ++SW+   +SF+VWNP +FA+DLLPK+FKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG+K LLR I RRK
Sbjct:   21 PTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRK 114          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.518e-34
Identity = 69/104 (66.35%), Postives = 82/104 (78.85%), Query Frame = 3
Query:  126 NATNAPPPFLSKTYDMVDDLATDSIVSWSP-----TSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRK 422
            +A+  P PFL+KTY +VDD ATD +VSW       +++SFVVW PPEFARD+LP YFKH+NFSSFVRQLNTYGFRKV P+RWEFANE F +G+K LL  I RRK
Sbjct:   18 SASVVPAPFLTKTYQLVDDPATDHVVSWEDDDGGESASSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRRK 121          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HFC2B_ORYSJ (Heat stress transcription factor C-2b OS=Oryza sativa subsp. japonica GN=HSFC2B PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.595e-34
Identity = 83/180 (46.11%), Postives = 105/180 (58.33%), Query Frame = 3
Query:  147 PFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXXXXXXXXXXXVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRXXXXXXXXXXXTMVQRLQGMEQRHQQMMAFLAKAV 686
            PF+ KTY MV+D  TD ++ W   +NSFVV +P  F++ LLP +FKHNNFSSFVRQLNTYGFRKVDPDRWEFA+  FLRGQ HLLR+I RR                      A  + G  G +E       D  ++  E+VRL+            M +R+Q  E+R +QM+AFL K V
Sbjct:   11 PFVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHASFLRGQTHLLRNIVRRGSAAAGGGGGGGGGKRR----DASADGGGGGGDE-------DMTMVATEVVRLKQEQRTIDDRVAAMWRRVQETERRPKQMLAFLLKVV 179          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HFB2A_ORYSJ (Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.837e-34
Identity = 65/93 (69.89%), Postives = 77/93 (82.80%), Query Frame = 3
Query:  144 PPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRK 422
            PPFL+KTY MV+D +TD  +SW+ +  +FVVW P EFARDLLPK+FKH+NFSSFVRQLNTYGF+KV  DRWEFAN+ F RG+KHLL  I RRK
Sbjct:    9 PPFLTKTYAMVEDPSTDETISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRK 101          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HFC1B_ORYSJ (Heat stress transcription factor C-1b OS=Oryza sativa subsp. japonica GN=HSFC1B PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.280e-33
Identity = 84/192 (43.75%), Postives = 107/192 (55.73%), Query Frame = 3
Query:  138 APPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXXXXXXXXXXXVGACVEVGKFGLE-----EEVERLKRDKNVLMQELVRLRXXXXXXXXXXXTMVQRLQGMEQRHQQMMAFLAKAVQSPG 698
            A  PF++KT+ MV D +T+++V W    N+F+V +P  F+  LLP YFKH NF+SFVRQLNTYGFRKVDPDRWEFA+E FLRGQ  LL  I R+K                      C E+ + G E     E V+RL+ ++  + +EL                M QRL+  E R  QMMAFLAK    PG
Sbjct:   21 AVAPFVAKTFHMVSDPSTNAVVRWGGAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDRWEFAHESFLRGQAQLLPRIVRKK--------------KKGGAAPGCRELCEEGEEVRGTIEAVQRLREEQRGMEEEL--------------QAMDQRLRAAESRPGQMMAFLAKLADEPG 184          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.132e-32
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 3
Query:  135 NAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRK 422
            + P PFLSKTY +VDD +TD +VSW+    +FVVW   EFA+DLLP+YFKHNNFSSF+RQLNTYGFRK  PD+WEFAN+ F RG + LL  I RRK
Sbjct:   10 SVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRK 105          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HSFB1_ORYSJ (Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica GN=HSFB1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.634e-31
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 3
Query:  141 PPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRK 422
            P PFL+KT  MV++ ATD ++SW     SFVVW P EFARDLLP +FKH NFSSFVRQLNTYGFRKV PDRWEFAN  F RG++ LL  I RRK
Sbjct:   28 PAPFLTKTNQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDRWEFANGNFRRGEQGLLSGIRRRK 121          
BLAST of FC878282 vs. ExPASy Swiss-Prot
Match: HSFB3_ARATH (Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.807e-30
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 3
Query:  141 PPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRK 422
            PPPFL KTY +V+D  TD ++SW+     FVVW P EFARDLLP  FKH NFSSFVRQLNTYGFRKV   RWEF+NE F +GQ+ L+ +I RRK
Sbjct:   38 PPPFLVKTYKVVEDPTTDGVISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFRKGQRELMSNIRRRK 131          
The following BLAST results are available for this feature:
BLAST of FC878282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
HFB4C_ORYSJ2.062e-3472.63Heat stress transcription factor B-4c OS=Oryza sat... [more]
HFB2B_ARATH2.694e-3469.15Heat stress transcription factor B-2b OS=Arabidops... [more]
HFB2A_ARATH2.694e-3465.96Heat stress transcription factor B-2a OS=Arabidops... [more]
HFB4A_ORYSJ3.518e-3466.35Putative heat stress transcription factor B-4a OS=... [more]
HFC2B_ORYSJ4.595e-3446.11Heat stress transcription factor C-2b OS=Oryza sat... [more]
HFB2A_ORYSJ7.837e-3469.89Heat stress transcription factor B-2a OS=Oryza sat... [more]
HFC1B_ORYSJ2.280e-3343.75Heat stress transcription factor C-1b OS=Oryza sat... [more]
HSFB1_ARATH1.132e-3265.63Heat stress transcription factor B-1 OS=Arabidopsi... [more]
HSFB1_ORYSJ1.634e-3168.09Heat stress transcription factor B-1 OS=Oryza sati... [more]
HSFB3_ARATH1.807e-3064.89Heat stress transcription factor B-3 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ7YA09RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ7YA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878282 ID=FC878282; Name=FC878282; organism=Citrus clementina; type=EST; length=743bp
TTTTAGTGTGATTAATTCACGAATTTGTTAGCATGGATGGAGCCGCCAAC
AGGGGCGGAGGCGCTGGTGATCCATCGGCGACTGGTGGTGGTGGTACGCC
TCCATCGCAGCCGACCCCTGTGCAGAATGCTACGAATGCACCACCGCCGT
TTCTGAGCAAAACTTATGACATGGTGGATGATCTGGCGACGGACTCGATA
GTGTCTTGGAGCCCTACCAGCAACAGCTTCGTCGTTTGGAACCCTCCGGA
GTTCGCGCGTGACCTCCTTCCTAAGTACTTCAAGCACAACAACTTTTCTA
GCTTTGTTCGCCAGTTAAACACTTACGGTTTTAGAAAAGTTGATCCGGAC
CGCTGGGAATTCGCAAATGAGGGCTTTTTACGTGGTCAAAAGCACCTGCT
TCGGAGTATTAGTAGGAGAAAACCTGCGCACGGACATGGTCATCAGCAGT
CACATCAACAAAATGCACAAAGTTCTTCCGTGGGTGCTTGTGTTGAAGTT
GGGAAATTTGGGCTTGAGGAAGAAGTAGAGAGGCTTAAGAGGGACAAGAA
CGTGCTTATGCAGGAACTTGTTAGGTTGAGGCAGCAGCAGCAGGCTACTG
ATAGCCAGCTGCAAACCATGGTTCAACGTCTTCAGGGGATGGAGCAGCGG
CACCAGCAAATGATGGCATTCCTGGCAAAAGCTGTGCAGAGCCCTGGTTT
CCTAGCCCAGTTTGTACAGCAACAAAATGATAGCAATAAACGG
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