FC878285

Overview
NameFC878285
Unique NameFC878285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10928 contig Ccv1_Contig10928:75..944. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_RICBR (Aspartate-semialdehyde dehydrogenase OS=Rickettsia bellii (strain RML369-C) GN=asd PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.724e-33
Identity = 78/203 (38.42%), Postives = 117/203 (57.64%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTRE--VLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            +E L++L++R+FP   I  +AS  S GK++SF ++   +  L +  F+ +DIA FSAG  +SKKF PIA+ K  +V+D SS FR+ E++PL++PE N   +    +      +I+NPNC  I   +   PL     + R+V+STYQ         M+EL  QT+   + E K P   IF +Q AFNLF H   + ++GY  EE
Sbjct:   18 RETLNILAERNFPINKIYAVASNNSIGKKVSFGEQVLQISSLDDLDFEEIDIAFFSAGSEVSKKFIPIAIVKNCMVIDKSSFFRLSEDIPLIVPEANLSTLKDFAI----KNIISNPNCIAIPLAVVLKPLDNEISIKRVVISTYQSVSGAGKAGMDELYDQTKSKYIFEEKSP--NIFPKQIAFNLFPHIGDLNKDGYTSEE 214          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_STRMU (Aspartate-semialdehyde dehydrogenase OS=Streptococcus mutans GN=asd PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.614e-31
Identity = 73/161 (45.34%), Postives = 103/161 (63.98%), Query Frame = 2
Query:  284 LSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVL 766
            L     P   +++L+S RSAGK L ++D+  TVE  T+DSF+GVDIALFSAGGS+S KF P AV+ G++VVDN+S FR   +VPLV+PEVN  AM           +IA PNCSTI  ++A  P+ ++  ++R++VSTYQ         + E   + +EV+
Sbjct:   22 LEQSTLPVDKVRLLSSSRSAGKVLQYKDQDVTVELTTKDSFEGVDIALFSAGGSVSAKFAPYAVKAGAVVVDNTSHFRQNPDVPLVVPEVNAYAMD------AHNGIIACPNCSTIQMMVALEPIRQKWGLSRVIVSTYQAVSGAGQSAINETVREIKEVV 176          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_RICFE (Aspartate-semialdehyde dehydrogenase OS=Rickettsia felis GN=asd PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.614e-31
Identity = 75/201 (37.31%), Postives = 110/201 (54.73%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            +E L++L++R+FP   I  +AS  S G+++S+ +K   +  LT  +FD +DIA F AG  +SK+F P A     +V+D SS FR+   VPL++PEVN   ++          +IANPNC  I   +A  PL    K+ R+V+STYQ         M+EL  QT+          K F +Q  FNLF H   + ++GY  EE
Sbjct:   18 RETLNILAERNFPVNKIYAIASDNSIGREISYGEKILKISSLTNLNFDDIDIAFFCAGSEVSKEFVPKATASSCVVIDKSSLFRVDNQVPLIVPEVNLSTLTEFNT----KNIIANPNCIVIPLAVALKPLDNEIKIKRVVISTYQSVSGAGKAGMDELYDQTKSKYVFGENDPKKFPKQITFNLFPHIGDLNKDGYTSEE 214          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_RICCN (Aspartate-semialdehyde dehydrogenase OS=Rickettsia conorii GN=asd PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.133e-31
Identity = 77/201 (38.31%), Postives = 112/201 (55.72%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            +E L++L++R+FP   +  +AS  S G+++SF +K   +  L    FD +DIA F AG  +SK+F P A     +V+D SS FR+   VPL++PEVN   +S +K    K  +IANPNC  I   +A  PL    K+ R+V+STYQ         M+EL  QT+          K F +Q AFN+F H   + ++GY  EE
Sbjct:   18 RETLNILAERNFPINKVYAIASDSSLGREVSFGEKILQINSLKSLHFDDIDIAFFCAGSEVSKEFIPKATASNCVVIDKSSLFRVDNQVPLIVPEVN---LSTLKEFNTKN-IIANPNCIVIPLAVALKPLDNEIKIKRVVISTYQSVSGAGKAGMDELYDQTKSKYVFGENDPKKFPKQIAFNIFPHIGDLNKDGYTSEE 214          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_HELPY (Aspartate-semialdehyde dehydrogenase OS=Helicobacter pylori GN=asd PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.740e-29
Identity = 81/213 (38.03%), Postives = 117/213 (54.93%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG--VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLE--GKPPTCKI--------FSQQYAFNLFSHNAPVLENGYNEEE 868
            QE +  L +  FP +    LAS RSAGK++   +K Y + E T + F+   +DIA FSAGGS+S++F   A  K ++VVDN+S FR+ ++VPLV+PE+N + +    +      +IANPNCSTI       PLH   K+  ++VSTYQ         +E L+ + +  LE   K PT  +        F+   AFN  +H     ENGY +EE
Sbjct:   17 QELIKGLENSFFPIKKFVPLASTRSAGKKIKAFNKDYEILETTHEVFEREKIDIAFFSAGGSVSEEFATSA-SKTALVVDNTSFFRLNKDVPLVVPEINAKEIFNAPLN-----IIANPNCSTIQMTQILNPLHLHFKIKSVIVSTYQAVSGAGNKGIESLKNELKTALECLEKDPTIDLNQVLQAGAFAYPIAFNAIAHIDTFKENGYTKEE 223          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_RICTY (Aspartate-semialdehyde dehydrogenase OS=Rickettsia typhi GN=asd PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.496e-29
Identity = 76/201 (37.81%), Postives = 110/201 (54.73%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            +E L++L++R FP   I  +AS  S G+++ F  K   +  LT  +F  +DIA F AG ++SK+F P A     IV+D +S FR    VPL++PE N   +S +K    K  +IANPNC  I  ++A  PL    K+ R+V+STYQ         M+EL  QT+     +    + F +Q AFNLF H     ++GY  EE
Sbjct:   18 RETLNILAERHFPINKIYAIASNNSLGREVRFGAKILHINSLTIFNFYDIDIAFFCAGSNVSKEFIPKATADNCIVIDKTSLFRTDNQVPLIVPEAN---LSTLKEFNTKN-IIANPNCIVIPLVVALKPLDNEIKIKRVVISTYQSVSGAGKAGMDELYDQTKSKYVFRENNPQKFPKQIAFNLFPHIGDFNKDGYTTEE 214          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_HELPJ (Aspartate-semialdehyde dehydrogenase OS=Helicobacter pylori J99 GN=asd PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.791e-29
Identity = 79/213 (37.09%), Postives = 117/213 (54.93%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG--VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLE--GKPPTCKI--------FSQQYAFNLFSHNAPVLENGYNEEE 868
            QE +  L +  FP +    LAS RSAGK++   +K Y + E T + F+   +DIA FSAGGS+S++F  I+  K ++V+DN+S FR+ ++VPLV+PE+N + +    +      +IANPNCSTI       PLH   K+  ++VSTYQ         +E L+ + +  LE   K P   +        F+   AFN  +H     ENGY +EE
Sbjct:   17 QELIKGLENSFFPIKKFVPLASARSAGKKIRAFNKDYEILETTHEVFEKEEIDIAFFSAGGSVSEEFA-ISASKTALVIDNTSFFRLNKDVPLVVPEINAQEIFNAPLN-----IIANPNCSTIQMTQILNPLHLHFKIKSVIVSTYQAVSGAGNKGIESLKNELKTALEHLEKDPAIDLNQVLQAGAFAYPIAFNAIAHIDTFKENGYTKEE 223          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_RICPR (Aspartate-semialdehyde dehydrogenase OS=Rickettsia prowazekii GN=asd PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.720e-28
Identity = 73/201 (36.32%), Postives = 111/201 (55.22%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            +E L++L++R FP   I  +AS  S G+++ F +K   +  +   +F  ++IA F AG ++SK+F P A     IV+D +S FR    VPL++PEVN   +S +K    K  +IANPNC  I  ++   PL    K+ R+V+STYQ         M+EL  QT+     +    K F +Q AFNLF +   + ++GY  EE
Sbjct:   18 RETLNILAERHFPINKIYAIASDNSLGREVRFGEKILHINSIKIFNFHDIEIAFFCAGSNVSKEFIPKATSCNCIVIDKTSLFRADNQVPLIVPEVN---LSTLKEFNTKN-IIANPNCIVIPLVVVLKPLDNEIKIKRVVISTYQSVSGAGKAGMDELYNQTKSKYVFRENNPKKFPKQIAFNLFPYIGDLNKDGYTSEE 214          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_MYCSM (Aspartate-semialdehyde dehydrogenase OS=Mycobacterium smegmatis GN=asd PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.846e-27
Identity = 72/170 (42.35%), Postives = 100/170 (58.82%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVN-PEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEG 772
            Q   ++L  R+FP  S++  AS RS GK+L+F+ +   VE        G+DIALFSAG ++S+   P   E G IVVDNSSAFR   +VPLV+ EVN    + G K+  G   +IANPNC+T+  +    PLH  A + R++VS+YQ         +EEL  Q R V++G
Sbjct:   15 QVMRNLLEQRNFPATSVRFFASPRSEGKKLTFRGQEIEVENAETADPSGLDIALFSAGATMSRVQAPRFAEAGVIVVDNSSAFRKDPDVPLVVSEVNFDRDVRGKKLAKG---IIANPNCTTMAAMPVLKPLHEEAGLQRLIVSSYQAVSGSGIAGVEELAGQARPVIDG 181          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_STRAK (Aspartate-semialdehyde dehydrogenase OS=Streptomyces akiyoshiensis GN=asd PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.016e-27
Identity = 72/207 (34.78%), Postives = 113/207 (54.59%), Query Frame = 2
Query:  281 VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVL--------EGKP---PTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            +L++R+FP   +++ AS RSAG +L       TVE+     + G+DI LFSAGG+ SK        +G++V+DNSSA+R    VPLV+ EVNP A+     G     +IANPNC+T+  +    PLH  A +  +VV+TYQ         + EL  QT++V+        +G+    P   ++ +  AFN+      ++++G NE +
Sbjct:   19 ILTERNFPVTELRLFASARSAGTELD----GVTVEDAATADYTGLDIVLFSAGGATSKALAEKVASQGAVVIDNSSAWRKHPEVPLVVSEVNPHAIKDRPKG-----IIANPNCTTMAAMPVLRPLHDEAGLEALVVATYQAVSGSGLAGVAELHGQTQKVVADAEKLTHDGEAVDFPEPGVYKRPIAFNVLPLAGSIVDDGLNETD 216          
The following BLAST results are available for this feature:
BLAST of FC878285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
DHAS_RICBR1.724e-3338.42Aspartate-semialdehyde dehydrogenase OS=Rickettsia... [more]
DHAS_STRMU1.614e-3145.34Aspartate-semialdehyde dehydrogenase OS=Streptococ... [more]
DHAS_RICFE1.614e-3137.31Aspartate-semialdehyde dehydrogenase OS=Rickettsia... [more]
DHAS_RICCN6.133e-3138.31Aspartate-semialdehyde dehydrogenase OS=Rickettsia... [more]
DHAS_HELPY5.740e-2938.03Aspartate-semialdehyde dehydrogenase OS=Helicobact... [more]
DHAS_RICTY7.496e-2937.81Aspartate-semialdehyde dehydrogenase OS=Rickettsia... [more]
DHAS_HELPJ9.791e-2937.09Aspartate-semialdehyde dehydrogenase OS=Helicobact... [more]
DHAS_RICPR3.720e-2836.32Aspartate-semialdehyde dehydrogenase OS=Rickettsia... [more]
DHAS_MYCSM1.846e-2742.35Aspartate-semialdehyde dehydrogenase OS=Mycobacter... [more]
DHAS_STRAK7.016e-2734.78Aspartate-semialdehyde dehydrogenase OS=Streptomyc... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA29CE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878285 ID=FC878285; Name=FC878285; organism=Citrus clementina; type=EST; length=870bp
CTCCGATTCAGACCCCACAGACGATCTTTGAAGCAACCAAAAACCCCATA
TCTGTTTCCAACTATCAAACTCAAAACCTCACTAGCCGCCATCCGCCGCC
GCAGCAAACATGGCGACTTTCTCGTCACATCAAACACAGACCCACTTCAT
ATCCAAACTGCCCGCCAACAAACCCAGAACCAAACCCATGTTCACAAGAG
TCCGAATGTCCTACCAAGAATCGGCACCCTCCGTGGCGGTCGTCGGCGTG
ACTGGCGCCGTCGGCCAAGAGTTCCTCTCCGTCCTCTCCGATCGCGACTT
CCCTTACCGTTCGATCAAAATGCTGGCCTCCAAGCGTTCTGCTGGGAAGC
AACTCAGCTTCCAAGACAAAGCGTACACGGTCGAAGAGCTAACGGAGGAT
AGCTTTGATGGCGTTGATATCGCGCTGTTTAGTGCTGGTGGGTCGATCAG
TAAGAAGTTTGGGCCTATTGCTGTCGAGAAAGGGAGCATTGTTGTGGATA
ATAGCTCGGCTTTTAGGATGGTGGAGAATGTGCCGCTTGTGATTCCTGAA
GTGAATCCTGAAGCCATGAGTGGGATTAAAGTTGGAATGGGGAAAGGTGC
TTTGATTGCTAATCCTAATTGTTCTACTATCATTTGCTTGATGGCTGCCA
CGCCTCTCCATCGCCGTGCTAAGGTTACACGTATGGTGGTAAGTACATAT
CAGGCTGCTAGTGGTGCTGGTGCTGCTGCAATGGAAGAACTTGAGCTGCA
AACTCGTGAGGTGCTGGAAGGAAAACCTCCAACTTGTAAAATCTTTTCAC
AACAGTATGCTTTCAATTTGTTCTCACACAATGCACCTGTTCTTGAAAAT
GGGTACAATGAAGAAGAGAT
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