FC878285

Overview
NameFC878285
Unique NameFC878285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10928 contig Ccv1_Contig10928:75..944. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_CORFL (Aspartate-semialdehyde dehydrogenase OS=Corynebacterium flavum GN=asd PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.016e-27
Identity = 65/169 (38.46%), Postives = 100/169 (59.17%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREV 763
            Q   ++L +R+FP  +++  AS RSAG+++ F+     VE++T   E+S  G+D+ALFSAGG+ SK++ P+    G+ VVDNSSA+R  + VPL++ EVNP     +  G     +IANPNC+T+  +    PLH  A + ++ VS+YQ         +E L  Q   V
Sbjct:   15 QVMRTLLEERNFPADTVRFFASPRSAGRKIEFRGTEIEVEDITQATEESLKGIDVALFSAGGTASKQYAPLFAAAGATVVDNSSAWRKDDEVPLIVSEVNPSDKDSLVKG-----IIANPNCTTMAAMPVLKPLHDAAGLVKLHVSSYQAVSGSGLAGVETLAKQVAAV 178          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_CORML (Aspartate-semialdehyde dehydrogenase OS=Corynebacterium melassecola GN=asd PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.548e-26
Identity = 64/169 (37.87%), Postives = 99/169 (58.58%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREV 763
            Q   ++L +R+FP  +++  AS RSAG+++ F+     VE++T   E+S   +D+ALFSAGG+ SK++ P+    G+ VVDNSSA+R  + VPL++ EVNP     +  G     +IANPNC+T+  +    PLH  A + ++ VS+YQ         +E L  Q   V
Sbjct:   15 QVMRTLLEERNFPADTVRFFASPRSAGRKIEFRGTEIEVEDITQATEESLKDIDVALFSAGGTASKQYAPLFAAAGATVVDNSSAWRKDDEVPLIVSEVNPSDKDSLVKG-----IIANPNCTTMAAMPVLKPLHDAAGLVKLHVSSYQAVSGSGLAGVETLAKQVAAV 178          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_CORGL (Aspartate-semialdehyde dehydrogenase OS=Corynebacterium glutamicum GN=asd PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.548e-26
Identity = 64/169 (37.87%), Postives = 99/169 (58.58%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREV 763
            Q   ++L +R+FP  +++  AS RSAG+++ F+     VE++T   E+S   +D+ALFSAGG+ SK++ P+    G+ VVDNSSA+R  + VPL++ EVNP     +  G     +IANPNC+T+  +    PLH  A + ++ VS+YQ         +E L  Q   V
Sbjct:   15 QVMRTLLEERNFPADTVRFFASPRSAGRKIEFRGTEIEVEDITQATEESLKDIDVALFSAGGTASKQYAPLFAAAGATVVDNSSAWRKDDEVPLIVSEVNPSDKDSLVKG-----IIANPNCTTMAAMPVLKPLHDAAGLVKLHVSSYQAVSGSGLAGVETLAKQVAAV 178          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_MYCTU (Aspartate-semialdehyde dehydrogenase OS=Mycobacterium tuberculosis GN=asd PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.483e-24
Identity = 67/169 (39.64%), Postives = 98/169 (57.99%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEG 772
            Q   ++L +RDFP  +++  AS RS G++L+F+ +   VE+       G+DIALFSAG ++SK   P     G  V+DNSSA+R   +VPLV+ EVN E  +  +    KG +IANPNC+T+  +     LH  A++ R+VVS+YQ         + EL  Q R V+ G
Sbjct:   16 QVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSAMSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRR---PKG-IIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARAVIGG 180          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_MYCBO (Aspartate-semialdehyde dehydrogenase OS=Mycobacterium bovis GN=asd PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.483e-24
Identity = 67/169 (39.64%), Postives = 98/169 (57.99%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEG 772
            Q   ++L +RDFP  +++  AS RS G++L+F+ +   VE+       G+DIALFSAG ++SK   P     G  V+DNSSA+R   +VPLV+ EVN E  +  +    KG +IANPNC+T+  +     LH  A++ R+VVS+YQ         + EL  Q R V+ G
Sbjct:   16 QVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSAMSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRR---PKG-IIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARAVIGG 180          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: USG_AZOVI (USG-1 protein homolog OS=Azotobacter vinelandii GN=usg PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.583e-17
Identity = 52/182 (28.57%), Postives = 91/182 (50.00%), Query Frame = 2
Query:  275 LSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAFNL 820
            + +L +RDFP   + +LAS  SAGK +SF+ +   V+ +    F  V +  F+AG ++++++   A   G ++VD S A  + +  P V+ EVNP+ +  ++        + +P    +   +A  PL    +   + V+            + EL  QT E+L G+PP  + F +Q AFNL
Sbjct:   21 VEILEERDFPVGQLHLLASPASAGKSVSFKGRNLRVKSIEAFDFAQVRLVFFAAGQAVTRQYASQARAAGCMLVDLSGALPL-QQAPRVVAEVNPQVLEKLEA----PCQVTSPASQVVALALALAPLRPLVRWRHLGVTACLPVSSLGREGVAELARQTTELLNGRPPKPRFFDRQIAFNL 197          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_METJA (Aspartate-semialdehyde dehydrogenase OS=Methanocaldococcus jannaschii GN=asd PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.572e-16
Identity = 53/164 (32.32%), Postives = 90/164 (54.88%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-----FQDKAY--TVEELT-------EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGK----GALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 703
            Q F+ +L+D    +    + AS+RSAGK+       FQD+     ++++         + F+ VDI   +    ++KKF P   ++G ++  N+SA+RM E+VPLVIPEVN + +  I++   K    GA+I NPNCSTI  ++   P+  +  +  + ++T Q
Sbjct:   22 QRFVQLLADHPM-FELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKPIMDKFGLEAVFIATMQ 184          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: USG_ECOLI (USG-1 protein OS=Escherichia coli (strain K12) GN=usg PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.766e-15
Identity = 57/186 (30.65%), Postives = 91/186 (48.92%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKP-PTCKIFSQQYAFNL 820
            +  L  L++R FP   I  LA   SAG+QL F  K  TV++  E  +    +A F AG   +  +   A   G +V+D+S  F +  +VPLV+PEVNP  ++  +       +IA P+  T   L A  PL  +  ++R+ V++           ++ L  Q+ ++L G P      F +Q AFN+
Sbjct:   18 EALLETLAERQFPVGEIYALARNESAGEQLRFGGKTITVQDAAEFDWTQAQLAFFVAGKEATAAWVEEATNSGCLVIDSSGLFALEPDVPLVVPEVNPFVLTDYR----NRNVIAVPDSLTSQLLAALKPLIDQGGLSRISVTSLISASAQGKKAVDALAGQSAKLLNGIPIDEEDFFGRQLAFNM 199          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_METTH (Aspartate-semialdehyde dehydrogenase OS=Methanobacterium thermoautotrophicum GN=asd PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.531e-13
Identity = 56/162 (34.57%), Postives = 78/162 (48.15%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD------------GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGK----GALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 703
            Q F+ +L D+   +    + AS RSAGK        Y   E+ E   D             VDI   +    +++K  P   EK  IV  N+SA RM  +VPLVIPEVNPE +  I+V   +    G ++ NPNCSTI   +   P++    + R+ VST Q
Sbjct:   15 QRFIQML-DKHPEFELTTLAASSRSAGKPYGEVANWYLDCEMPESVRDMEVVETDPSAVGDVDILFSALPADVARKVEPKFAEK-YIVASNASAMRMEPDVPLVIPEVNPEFLDLIEVQQRRRGWDGFIVTNPNCSTIALTLTLKPIYDAYTIKRVYVSTMQ 174          
BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: DHAS_ARCFU (Aspartate-semialdehyde dehydrogenase OS=Archaeoglobus fulgidus GN=asd PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.191e-12
Identity = 47/146 (32.19%), Postives = 78/146 (53.42%), Query Frame = 2
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ----------DKAYTVEELTED-SFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGK----GALIANPNCSTIICLMAATPL 658
            Q+F+ +L++  + ++   + AS+R  GK+   +          D A  +E +  D      DI   +    I+++  P   E G +V  N+SA+RM E+VPLVIPEVNPE +  I+V        G ++ NPNC+TI+ +++  PL
Sbjct:   16 QKFIQMLAEHPW-FKLTSLAASERRVGKKYGEEVDWIVSREVPDIAKDIEMVPMDPKHVDADIVFSALPSDIAREVEPKFAEAGFVVASNASAYRMAEDVPLVIPEVNPEHLGLIEVQKKNRGWDGFIVTNPNCTTIVLVLSLKPL 160          
The following BLAST results are available for this feature:
BLAST of FC878285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
DHAS_CORFL7.016e-2738.46Aspartate-semialdehyde dehydrogenase OS=Corynebact... [more]
DHAS_CORML4.548e-2637.87Aspartate-semialdehyde dehydrogenase OS=Corynebact... [more]
DHAS_CORGL4.548e-2637.87Aspartate-semialdehyde dehydrogenase OS=Corynebact... [more]
DHAS_MYCTU9.483e-2439.64Aspartate-semialdehyde dehydrogenase OS=Mycobacter... [more]
DHAS_MYCBO9.483e-2439.64Aspartate-semialdehyde dehydrogenase OS=Mycobacter... [more]
USG_AZOVI6.583e-1728.57USG-1 protein homolog OS=Azotobacter vinelandii GN... [more]
DHAS_METJA5.572e-1632.32Aspartate-semialdehyde dehydrogenase OS=Methanocal... [more]
USG_ECOLI2.766e-1530.65USG-1 protein OS=Escherichia coli (strain K12) GN=... [more]
DHAS_METTH7.531e-1334.57Aspartate-semialdehyde dehydrogenase OS=Methanobac... [more]
DHAS_ARCFU2.191e-1232.19Aspartate-semialdehyde dehydrogenase OS=Archaeoglo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA29CE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878285 ID=FC878285; Name=FC878285; organism=Citrus clementina; type=EST; length=870bp
CTCCGATTCAGACCCCACAGACGATCTTTGAAGCAACCAAAAACCCCATA
TCTGTTTCCAACTATCAAACTCAAAACCTCACTAGCCGCCATCCGCCGCC
GCAGCAAACATGGCGACTTTCTCGTCACATCAAACACAGACCCACTTCAT
ATCCAAACTGCCCGCCAACAAACCCAGAACCAAACCCATGTTCACAAGAG
TCCGAATGTCCTACCAAGAATCGGCACCCTCCGTGGCGGTCGTCGGCGTG
ACTGGCGCCGTCGGCCAAGAGTTCCTCTCCGTCCTCTCCGATCGCGACTT
CCCTTACCGTTCGATCAAAATGCTGGCCTCCAAGCGTTCTGCTGGGAAGC
AACTCAGCTTCCAAGACAAAGCGTACACGGTCGAAGAGCTAACGGAGGAT
AGCTTTGATGGCGTTGATATCGCGCTGTTTAGTGCTGGTGGGTCGATCAG
TAAGAAGTTTGGGCCTATTGCTGTCGAGAAAGGGAGCATTGTTGTGGATA
ATAGCTCGGCTTTTAGGATGGTGGAGAATGTGCCGCTTGTGATTCCTGAA
GTGAATCCTGAAGCCATGAGTGGGATTAAAGTTGGAATGGGGAAAGGTGC
TTTGATTGCTAATCCTAATTGTTCTACTATCATTTGCTTGATGGCTGCCA
CGCCTCTCCATCGCCGTGCTAAGGTTACACGTATGGTGGTAAGTACATAT
CAGGCTGCTAGTGGTGCTGGTGCTGCTGCAATGGAAGAACTTGAGCTGCA
AACTCGTGAGGTGCTGGAAGGAAAACCTCCAACTTGTAAAATCTTTTCAC
AACAGTATGCTTTCAATTTGTTCTCACACAATGCACCTGTTCTTGAAAAT
GGGTACAATGAAGAAGAGAT
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