FC878285

Overview
NameFC878285
Unique NameFC878285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10928 contig Ccv1_Contig10928:75..944. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878285 vs. ExPASy Swiss-Prot
Match: USG_PSEAE (USG-1 protein homolog OS=Pseudomonas aeruginosa GN=usg PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11
Identity = 53/203 (26.11%), Postives = 89/203 (43.84%), Query Frame = 2 
Query:  266 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPE--AMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEE 868
            +  + +L +RDFP   + +LAS  SAG+++ F + +  V ++    F  V +A F+A   +S+     A   G  V+D S A       P V+  VN E  A       +     +A   C  +  L+A     +      + VS+           ++EL  QT E+L  +P   ++F +Q AFNL +    V   G++  E
Sbjct:   18 EALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALE-PSVAPPVMVSVNAERLASQAAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSS------LGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGHSAIE 213
The following BLAST results are available for this feature:
BLAST of FC878285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
USG_PSEAE2.423e-1126.11USG-1 protein homolog OS=Pseudomonas aeruginosa GN... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA29CE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878285 ID=FC878285; Name=FC878285; organism=Citrus clementina; type=EST; length=870bp
CTCCGATTCAGACCCCACAGACGATCTTTGAAGCAACCAAAAACCCCATA
TCTGTTTCCAACTATCAAACTCAAAACCTCACTAGCCGCCATCCGCCGCC
GCAGCAAACATGGCGACTTTCTCGTCACATCAAACACAGACCCACTTCAT
ATCCAAACTGCCCGCCAACAAACCCAGAACCAAACCCATGTTCACAAGAG
TCCGAATGTCCTACCAAGAATCGGCACCCTCCGTGGCGGTCGTCGGCGTG
ACTGGCGCCGTCGGCCAAGAGTTCCTCTCCGTCCTCTCCGATCGCGACTT
CCCTTACCGTTCGATCAAAATGCTGGCCTCCAAGCGTTCTGCTGGGAAGC
AACTCAGCTTCCAAGACAAAGCGTACACGGTCGAAGAGCTAACGGAGGAT
AGCTTTGATGGCGTTGATATCGCGCTGTTTAGTGCTGGTGGGTCGATCAG
TAAGAAGTTTGGGCCTATTGCTGTCGAGAAAGGGAGCATTGTTGTGGATA
ATAGCTCGGCTTTTAGGATGGTGGAGAATGTGCCGCTTGTGATTCCTGAA
GTGAATCCTGAAGCCATGAGTGGGATTAAAGTTGGAATGGGGAAAGGTGC
TTTGATTGCTAATCCTAATTGTTCTACTATCATTTGCTTGATGGCTGCCA
CGCCTCTCCATCGCCGTGCTAAGGTTACACGTATGGTGGTAAGTACATAT
CAGGCTGCTAGTGGTGCTGGTGCTGCTGCAATGGAAGAACTTGAGCTGCA
AACTCGTGAGGTGCTGGAAGGAAAACCTCCAACTTGTAAAATCTTTTCAC
AACAGTATGCTTTCAATTTGTTCTCACACAATGCACCTGTTCTTGAAAAT
GGGTACAATGAAGAAGAGAT
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