FC878289

Overview
NameFC878289
Unique NameFC878289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length928
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12470 contig Ccv1_Contig12470:124..1051. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878289 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.836e-28
Identity = 82/257 (31.91%), Postives = 126/257 (49.03%), Query Frame = 3
Query:  201 IPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGK----KLFDPIRWGTSFNV-----NVDKTLFWRDYLKIHVHP-----QFNAPQNPLGFSKTIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLH--VRHDGKWILVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVN 923
            +PIID         +  +  +Q I  AC  +G F+VINHG P  L  E +   + FF L  E+K ++  K    K   P+       V     + ++ L+W+D L    HP       + P+ P  + + + +Y   VR+L   +L  I E LGL+  Y     D E    Q+++ N YPPCP P   +G   H D  L+T L+Q D  GL   +  D  WI V P P +FVVN+G  +++++N K++  +HR V +
Sbjct:   35 VPIIDLQ-------QHHHLLVQQITKACQDFGLFQVINHGFPEELMLETMEVCKEFFALPAEEKEKFKPKGEAAKFELPLEQKAKLYVEGEQLSNEEFLYWKDTLAHGCHPLDQDLVNSWPEKPAKYREVVAKYSVEVRKLTMRMLDYICEGLGLKLGY----FDNELSQIQMMLTNYYPPCPDPSSTLGSGGHYDGNLIT-LLQQDLPGLQQLIVKDATWIAVQPIPTAFVVNLGLTLKVITNEKFEGSIHRVVTD 279          
BLAST of FC878289 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 4.090e-28
Identity = 81/282 (28.72%), Postives = 136/282 (48.23%), Query Frame = 3
Query:  129 TSVPSKYFFEKDLNDDCINSEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHPQFN---------------APQNPLGFSKTIQEYCKRVRELANELLKGIMESLGL--EESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWILVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVN 923
            T +PS++ +  + +   +  E   + +ID      G+  +R   ++ +G AC + GFF V+NHG+   L +E  R  ++FF L   +K+  A ++  +   + +SF       L W++ L        +                 ++     +    YC  +  L+ EL++ + ESLG+  +  +  +      DS  ++ +N YP C +P   +G  PH D   LTIL Q+   GL V  +G+W  + P PG+ VVN+GD    LSN +Y+S LHRAVVN
Sbjct:   22 TEIPSQFIWPAEESPGSVAVEELEVALIDV-----GAGAERSSVVRQVGEACERHGFFLVVNHGIEAALLEEAHRCMDAFFTLPLGEKQR-AQRRAGESCGYASSFTGRFASKLPWKETLSFRYSSAGDEEGEEGVGEYLVRKLGAEHGRRLGEVYSRYCHEMSRLSLELMEVLGESLGIVGDRRHYFRRFFQRNDS--IMRLNYYPACQRPLDTLGTGPHCDPTSLTILHQDHVGGLEVWAEGRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVN 295          
BLAST of FC878289 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.190e-27
Identity = 72/246 (29.27%), Postives = 127/246 (51.63%), Query Frame = 3
Query:  201 IPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHPQFNA-----PQNPLGFSKTIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWILVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVN 923
            +P++D S      P++     + +  A   WG F+V+NHG+P  L   + +    FF+L + +KR  A ++      +G    +++ K     D + +   P  +      P++P  + +  +EY + V+ L+ ++++ + E LGL    I++          ++ +N YPP P  +   GL PH+D   LT+++ N+  GL V  D  WI V   P + +VNIGD + +LSNGKYK+VLH+  V+
Sbjct:    2 VPVVDLSC-----PDEEL-VARTVVKASEDWGVFQVVNHGIPTELIQRLQKVGREFFELPEAEKRSCA-REAGSVEGYGRRIELDIKKRKGIVDQIYLSTWPPSSVNYRYWPKSPPDYREVNEEYARHVKTLSEKIMEWLSEGLGLGREAIKEV----NGCWYVMNINHYPPYPHSDSFNGLEPHTDINGLTLIITNEIPGLQVFKDDHWIEVEYIPSAIIVNIGDQIMMLSNGKYKNVLHKTTVD 236          
BLAST of FC878289 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.906e-27
Identity = 78/256 (30.47%), Postives = 132/256 (51.56%), Query Frame = 3
Query:  201 IPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHV-HPQFNAP------QNPLGFSKTIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEV-------VMGLPPHSDHGLLTILMQNDHVGLHVR-HDGKWILVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVN 923
            IP+ID S      PE ++    A+  AC  +GFF+VINHGV   L   +   +  FF L   +K + AG     P  +G S  +  +  + W +YL ++  H   + P      ++P  F   ++EY   VR++  ++L+ I + LG++       +  + ++  +L +N YPPCP           V+G   H+D  ++++L  N+  GL +  +DG WI V P   SF  N+GD +++++NG++KSV HR + N
Sbjct:   18 IPVIDMS-----DPESKH----ALVKACEDFGFFKVINHGVSAELVSVLEHETVDFFSLPKSEKTQVAGY----PFGYGNS-KIGRNGDVGWVEYLLMNANHDSGSGPLFPSLLKSPGTFRNALEEYTTSVRKMTFDVLEKITDGLGIKPRNTLSKLVSDQNTDSILRLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQIISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLAN 259          
BLAST of FC878289 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.244e-26
Identity = 72/255 (28.24%), Postives = 136/255 (53.33%), Query Frame = 3
Query:  192 AETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHPQFNAP-------QNPLGFSKTIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPE---VVMGLPPHSDHGLLTILMQNDHVGLHVR-HDGKWILVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVN 923
            + +IP+++ +      PE + + ++A    C ++GFF+V+NHGV   L   + + +  FF L    K   AG    +P  +G    +  +  + W +YL ++ +PQ ++P       Q P  F ++++EY K ++E++ ++L+ + E LG+E       M  +  S   L +N YP   +     V +G   H+D  ++++L  N+  GL +   DG W+ V P   SF +N+GD +++++NG++KSV HR + +
Sbjct:   28 SHSIPVVNLA-----DPEAKTRIVKA----CEEFGFFKVVNHGVRPELMTRLEQEAIGFFGLPQSLKNR-AGPP--EPYGYGNK-RIGPNGDVGWIEYLLLNANPQLSSPKTSAVFRQTPQIFRESVEEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRDEKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQIISVLRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLAD 269          
BLAST of FC878289 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.530e-26
Identity = 77/257 (29.96%), Postives = 128/257 (49.81%), Query Frame = 3
Query:  156 EKDLNDDCINSEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQK-REYAGKKLFDPIRWGT-SFNVNVDKTLFWRDYLKIHVHPQFNAPQNPLGFSKTIQE-YCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWILVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAV 917
            E + N   I +    +P+ID S LTSG   +R + ++ +  A  +WGFF+++NHG+P  + + M+   +  FD     K RE       +  RWG  S       ++    ++ +    + +  +N L   +TI E Y + +  +A  + + + + + +   Y +   +LE   +  L +N Y P      V GL PH+D   LTIL Q+   GL + ++G+WI V P   +  VNIGD  + LSNG Y+SV HR +
Sbjct:   25 ESNTNTSTIQTSGIKLPVIDLSHLTSGEEVKRKRCVKQMVAAAKEWGFFQIVNHGIPKDVFEMMLLEEKKLFDQPFSVKVRERFSDLSKNSYRWGNPSATSPAQYSVSEAFHIILSEVSRISDDRNNL---RTIVETYVQEIARVAQMICEILGKQVNVSSEYFENIFELE---NSFLRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQDQIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVI 275          
BLAST of FC878289 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.455e-25
Identity = 71/253 (28.06%), Postives = 129/253 (50.99%), Query Frame = 3
Query:  201 IPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHPQFNAP-------QNPLGFSKTIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVV----MGLPPHSDHGLLTILMQNDHVGLHV-RHDGKWILVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVN 923
            IP++D +      P+ +      I NAC  +GFF+++NHGVP  L   +   +  FF  S  +K + AG    DP  +G+   +  +  + W +YL ++ +P   +P       +NP  F   ++ Y   V+ +   +L+ + E LG+ +      +  +  S     +N YPPCP+ + +    +G   H+D  ++++L  N   GL +   DG W+ V P   SF +N+GD +++++NG++KSV HR + +
Sbjct:   27 IPVVDLT-----HPDAK----NLIVNACRDFGFFKLVNHGVPLELMANLENEALRFFKKSQSEK-DRAGPP--DPFGYGSK-RIGPNGDVGWVEYLLLNTNPDVISPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPPCPEVQALNRNLVGFGEHTDPQIISVLRSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLAD 266          
BLAST of FC878289 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.233e-25
Identity = 88/291 (30.24%), Postives = 133/291 (45.70%), Query Frame = 3
Query:  135 VPSKYFFEKDLNDDCINSEAET------IPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDL----------SDEQKREYAGKKL---FDPIRWGTSFNVNVDKTLFWRDYLKIHVHPQFNAPQNPLGFSKTIQEYCKRVRELANELLKGIMESLGLEES----YIQKAMDLETDSHQ-LLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLHV----RHDGKWILVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVN 923
            +P  +   K L D  + S+ E       IP+I  S     +PE+       +  AC +WG F + +HGV ++L   +    +  F L          S ++   Y   ++   +D + W   F+V             +  H     P +   F   ++EY K + +L++ L+  +M SLGL        +       TDS Q  L +N YP CP P + MGL PH+D  LLTIL Q +  GL +        +WI V P  GS VV +GD   I+SNG+++S +HRAVVN
Sbjct:   19 IPLDFTNTKTLPDSHVWSKPEPETTSGPIPVISLS-----NPEEH----GLLRQACEEWGVFHITDHGVSHSLLHNVDCQMKRLFSLPMHRKILAVRSPDESTGYGVVRISMFYDKLMWSEGFSVMGSS---------LRRHATLLWPDDHAEFCNVMEEYQKAMDDLSHRLISMLMGSLGLTHEDLGWLVPDKTGSGTDSIQSFLQLNSYPVCPDPHLAMGLAPHTDSSLLTILYQGNIPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVN 291          
BLAST of FC878289 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.608e-24
Identity = 76/253 (30.04%), Postives = 132/253 (52.17%), Query Frame = 3
Query:  192 AETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHPQFNAP---QNPLGFSKTIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQ----PEVVMGLPPHSDHGLLTILMQNDHVGLHVR-HDGKWILVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNG 926
            + +IP++D S      P+   KT+  I  AC  +GFF+VINHG+P     ++   +  FF L   +K E AG    +P  +G    + ++  + W +YL +  +   N     ++   F   +++Y   +R +A E+L  + E L ++   +   + ++  S  L  VN YP CP+     E ++G   H+D  +++IL  N+  G  +   DG WI V P   SF +N+GD +++++NG++KSV HR + NG
Sbjct:   24 SSSIPLVDLS-----KPDA--KTL--IVKACEDFGFFKVINHGIPLDAISQLESEAFKFFSLPQTEK-EKAGPA--NPFGYGNK-RIGLNGDIGWIEYLLLTTNQDHNFSLYGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQIISILRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANG 263          
BLAST of FC878289 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.982e-24
Identity = 80/268 (29.85%), Postives = 130/268 (48.51%), Query Frame = 3
Query:  186 SEAETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHP-------QFNAPQNPLGFSKTIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQ-------PEVV-------MGLPPHSDHGLLTILMQNDHVGLHVR-HDGKWILVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVN 923
            ++A  IP ID S+       +R +  + +  AC ++GFF+V+NH VP  +   +      FF  +  +KR+ AG     P  +G   N+  +      +YL +H +P       +  A  +P+ FS  + +Y K V++L  E+L+   E L + +      +  +  S  LL +N YPP  +       P  +       +G   HSD  +LTIL  N+  GL +  H G WI V P P  F V +GD +++L+NG++ SV HR + N
Sbjct:   15 TKAVGIPTIDLSL-------ERSQLSELVVKACEEYGFFKVVNHSVPKEVISRLDEEGIEFFSKNSSEKRQ-AGTST--PFGYGCK-NIGPNGDKGELEYLLLHSNPISISERSKTIAKDHPIKFSCIVNDYIKAVKDLTCEILELAAEGLWVPDKSSLSKIIKDEHSDSLLRINHYPPVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQILTILRSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTN 271          
The following BLAST results are available for this feature:
BLAST of FC878289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
HY6H_HYONI1.836e-2831.91Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
GAOX1_ORYSJ4.090e-2828.72Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
FLS_MATIN1.190e-2729.27Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]
G2OX1_ARATH5.906e-2730.47Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G2OX2_ARATH2.244e-2628.24Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G2OX7_ARATH6.530e-2629.96Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
G2OX_PHACN1.455e-2528.06Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
G3OX3_ARATH4.233e-2530.24Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G2OX1_PEA1.608e-2430.04Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
G2OX2_PEA7.982e-2429.85Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA24CD02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA24CD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878289 ID=FC878289; Name=FC878289; organism=Citrus clementina; type=EST; length=928bp
TCTTATTATACAGGACTAGCAAATTCTATAGATAGTTTCATAATATTTAT
ACAGAAGCCTTCACACCTTGGAATACATATATATGAAAAATGTTTTGTGT
GAAAGGATTAAGCGAATCAGGTCGTCTCACATCTGTTCCTTCTAAGTATT
TCTTTGAAAAAGATCTTAATGATGATTGCATAAACTCAGAAGCAGAAACA
ATCCCCATCATAGACTTTTCCATGCTTACTTCTGGTTCTCCGGAACAACG
TTACAAGACAATCCAAGCCATCGGCAATGCATGCCTCAAATGGGGTTTCT
TTGAGGTAATTAATCATGGAGTACCGAACACATTGCGAGATGAGATGATA
AGGGCAAGTGAAAGTTTCTTCGATCTGTCGGACGAGCAAAAGAGAGAGTA
CGCAGGAAAGAAGCTGTTTGATCCAATAAGATGGGGGACAAGCTTCAACG
TTAATGTCGACAAGACATTATTCTGGAGGGATTACCTGAAGATCCACGTC
CATCCCCAGTTCAATGCTCCTCAAAACCCTCTTGGCTTCAGTAAAACCAT
ACAAGAATATTGCAAAAGAGTTCGAGAATTGGCCAATGAATTACTGAAAG
GGATTATGGAAAGCTTAGGATTGGAAGAAAGCTATATACAAAAGGCAATG
GATCTTGAGACAGACTCTCATCAGTTGCTTGTCGTCAATTTATACCCTCC
TTGTCCACAGCCAGAAGTAGTGATGGGGCTGCCTCCTCATTCGGATCATG
GCCTCTTAACCATCCTTATGCAGAATGACCATGTAGGTCTTCACGTACGG
CACGATGGCAAATGGATTCTCGTCAATCCTCCACCCGGCTCTTTCGTAGT
CAACATAGGAGACCACATGGAGATACTAAGTAACGGAAAGTACAAAAGCG
TGTTGCACAGAGCAGTAGTGAACGGGCA
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