FC878290

Overview
NameFC878290
Unique NameFC878290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_YARLI (40S ribosomal protein S0 OS=Yarrowia lipolytica GN=RPS0 PE=3 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 2.020e-64
Identity = 116/193 (60.10%), Postives = 150/193 (77.72%), Query Frame = 1
Query:  112 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 687
            DIQ +LAA+ H+G+KN   Q   YVFK+R DG+ IIN+GKTWEK+Q+AAR+I A+ NP D++  SAR YGQRAVLKFA +  A AIAGR TPG+FTN +  SF EPRLLI+TDPRTDHQ IKEA+  NIP IA  DTDSP+ +VD+ IP NNKG+HS+G ++W+++R VL++RG +   + +W VM DL+FYR
Sbjct:   12 DIQNLLAAQTHIGSKNVQVQNIPYVFKQRADGVNIINVGKTWEKIQLAARIIAAVPNPADVVAISARTYGQRAVLKFANHCGATAIAGRFTPGSFTNYITRSFKEPRLLIVTDPRTDHQAIKEASYVNIPVIALVDTDSPVEFVDVAIPCNNKGRHSVGLVWWMISREVLRLRGALEDRNTEWSVMPDLYFYR 204          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA2_SCHPO (40S ribosomal protein S0-B OS=Schizosaccharomyces pombe GN=rps0b PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.638e-64
Identity = 121/201 (60.20%), Postives = 152/201 (75.62%), Query Frame = 1
Query:   85 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            P  L+  + DI+ +LAA+ H+G+KN + +ME YV+KRR+DGI+IINLGKTWEKL +AARVI  IENP D+ V S+RPYG RAVLKFA +T A AIAGR TPG FTN +  ++ EPRL+I+TDPR D Q IKEA+  NIP IA CDTDS + +VD+ IP NNKG  SIG  ++LLAR VL++RG I     W+VM DL+FYR
Sbjct:    8 PSVLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYR 208          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_TOXGO (40S ribosomal protein SA OS=Toxoplasma gondii PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.500e-64
Identity = 121/201 (60.20%), Postives = 150/201 (74.63%), Query Frame = 1
Query:   91 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHK--WDVMVDLFFYR 687
            +LS +E  I  ML  + H+GTKN + +M  YVFK  ++GI++INL KTWEK+ MAARVIVAIENP D++V SARPYG RAVLKF++Y  A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q ++E+A  N+P IA CDTDSP+ +VDI IP NNKGK SI  ++WLLAR VL +RG + P     WDVMVD+F +R
Sbjct:    8 KLSLQEDSIAKMLICKAHIGTKNVEHKMRPYVFKSTSEGIHLINLAKTWEKILMAARVIVAIENPADVLVISARPYGSRAVLKFSQYVGAQAIAGRWTPGMLTNQITQKFMEPRLLIVTDPRTDAQAVRESAYANVPVIALCDTDSPLEHVDICIPCNNKGKESIALMYWLLAREVLYLRGEL-PSRSVPWDVMVDMFLWR 207          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_DICDI (40S ribosomal protein SA OS=Dictyostelium discoideum GN=rpsA PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.233e-63
Identity = 122/201 (60.70%), Postives = 146/201 (72.64%), Query Frame = 1
Query:   85 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            P  L+  + DI  MLA + HLG  N D +ME Y +KR+++G +IINL KTWEK+Q+AARVIVAIENP DI V SA+P GQRAVLKFA +  A A +GR TPGTFTNQ+Q+ F EPRLLI+ DP  D QP+ EA+  NIPTIA CDT S +  VDI IP NN+GK+SI  +FWLLAR VL +RGTI     W V VDLF YR
Sbjct:    5 PAALNPHQDDILKMLACQTHLGGNNVDVEMESYTWKRKDNGHFIINLAKTWEKIQLAARVIVAIENPADISVISAKPLGQRAVLKFANFIGATAFSGRFTPGTFTNQIQSKFTEPRLLIVADPLLDKQPLMEASYVNIPTIALCDTTSCLDGVDIAIPCNNRGKNSIALMFWLLAREVLYLRGTIPRNTTWSVKVDLFIYR 205          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_CHLVR (40S ribosomal protein SA OS=Chlorohydra viridissima PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.975e-63
Identity = 121/198 (61.11%), Postives = 147/198 (74.24%), Query Frame = 1
Query:   94 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            LS KE D+   LAA VHLG+ N     + YVFKR++DGI+IINL KTWEKL +AAR+I +IENP D+ V S+RPYG RAVLKFA+ T A  IAGR TPGTFTNQ+Q  F EPRLLI TDP+ D+Q + EA+  NIP IA C+TDSP+R+VD  IP NN+G  SIG ++W+LAR VL +RG I     W+VM DLFFYR
Sbjct:    8 LSLKEEDVVKFLAAGVHLGSTNVGSSCQGYVFKRKSDGIHIINLRKTWEKLILAARIIASIENPADVCVISSRPYGTRAVLKFAQSTGAIPIAGRFTPGTFTNQIQKRFREPRLLISTDPQHDNQALTEASYVNIPVIALCNTDSPLRFVDCAIPCNNRGIQSIGTMWWILAREVLHLRGIISRKTPWNVMPDLFFYR 205          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_USTMA (40S ribosomal protein S0 OS=Ustilago maydis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.500e-62
Identity = 113/201 (56.22%), Postives = 149/201 (74.13%), Query Frame = 1
Query:   85 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            P  L+  E DI ++LAA+ H+GTKN D QM  Y++KRR DGI+++N+GKTWEK+  AAR++ AIENP DI V S R YG RAVLKFA  T A AIAGR TPG+FTN +  SF EPR++++TDPR DHQ I+EA+  NIP I+F D+DSP+++VD+ IP N +G+HS+G L+WLL R VL+++     G    VM D+FFYR
Sbjct:    5 PAALNPTEEDISLLLAAQTHIGTKNADKQMAPYIYKRRADGIHLLNIGKTWEKIVFAARILAAIENPADICVISGRQYGHRAVLKFAAQTGATAIAGRFTPGSFTNYITRSFKEPRVIVVTDPRVDHQAIREASYVNIPCISFVDSDSPLKFVDVAIPGNVRGRHSVGLLWWLLCRTVLRIK-----GGDLSVMPDMFFYR 200          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_BRUMA (40S ribosomal protein SA OS=Brugia malayi GN=Bm1_41245 PE=3 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 3.565e-61
Identity = 116/200 (58.00%), Postives = 148/200 (74.00%), Query Frame = 1
Query:  103 KEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG--TIRPGHKWD---VMVDLFFYR 687
            KE D   +LA + H+G  NCDFQME+YV+KRR DGI+II+L KTWEKL +AAR I AI+NPGD+ V SARPY QRA+LKFA +T +  I GR TPG  TNQ+Q  F EPRLLI++DPR DHQ + EA+   +P I+FC+TDSP++++DI IP NNKG  SIG ++WLLAR VL ++G  T + G   D   +M DL+FYR
Sbjct:   11 KEEDAIKLLACQTHVGAANCDFQMEQYVWKRRADGIHIIHLRKTWEKLLLAARAIAAIDNPGDVCVVSARPYAQRALLKFAAHTGSTPIFGRFTPGCLTNQIQKQFKEPRLLIVSDPRVDHQAVTEASYVGVPVISFCNTDSPLKFIDIAIPCNNKGVQSIGLMWWLLAREVLLIKGKMTRQTGFVLDDKEIMPDLYFYR 210          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_THEAN (40S ribosomal protein SA OS=Theileria annulata GN=TA10185 PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.656e-61
Identity = 111/204 (54.41%), Postives = 147/204 (72.06%), Query Frame = 1
Query:   76 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            A    +L+  E  I+MML A+VH+GTKN + +M +YV+ R  +G+++INL  T EKL++AAR IV + NP +++V SARPYG RAVLKF+ Y  +H IAGR  PGT TNQ+   F EPRLL+ TDPRTD Q +KE++  ++P IA CDTDSP+ YVDI IP NNKGK SI  ++WLLAR VL +R  ++    WDV+VD FF+R
Sbjct:    2 AAPTSKLTPDEDSIRMMLTAKVHIGTKNVENKMRKYVYSRTQEGVHLINLAHTLEKLKVAARAIVTVSNPEEVVVVSARPYGSRAVLKFSHYVGSHPIAGRWIPGTLTNQITQKFIEPRLLVATDPRTDAQSLKESSYVSLPVIALCDTDSPLNYVDIAIPCNNKGKESIALMYWLLAREVLYLRDQLKRWMPWDVLVDTFFWR 205          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_LACTC (40S ribosomal protein S0 OS=Lachancea thermotolerans (strain CBS 6340) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.942e-61
Identity = 113/193 (58.55%), Postives = 145/193 (75.13%), Query Frame = 1
Query:  112 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYR 687
            D Q++LAA VHLG+KN     E YVFK R DG+ ++N+GKTWEK+ +AAR+I AI NP D++  S+R YGQRAVLKF+ +T A AIAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG +++LLAR VL++RG+ +     W +M DL+FYR
Sbjct:   13 DAQLLLAANVHLGSKNVQVHQEPYVFKTRPDGVNVVNVGKTWEKIVLAARIIAAIPNPEDVVAISSRTYGQRAVLKFSAHTGATAIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKESSYVNIPVIALTDLDSPSEYVDVAIPCNNKGKHSIGLIWYLLAREVLRLRGSLVDRTQPWSIMPDLYFYR 205          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_THEPA (40S ribosomal protein SA OS=Theileria parva GN=TP04_0748 PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.037e-60
Identity = 110/204 (53.92%), Postives = 147/204 (72.06%), Query Frame = 1
Query:   76 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            A    +L+  E  I+MML A+VH+GTKN + +M +YV+ R  +G+++INL  T EKL++AAR IV + NP +++V SARPYG RAVLKF+ Y  +H IAGR  PGT TNQ+   F EPRLL+ TDPRTD Q ++E++  ++P IA CDTDSP+ YVDI IP NNKGK SI  ++WLLAR VL +R  ++    WDV+VD FF+R
Sbjct:    2 AAPTSKLTPDEDSIRMMLTAKVHIGTKNVENKMRKYVYSRTQEGVHLINLAHTLEKLKVAARAIVTVSNPEEVVVVSARPYGSRAVLKFSHYVGSHPIAGRWIPGTLTNQITQKFIEPRLLVATDPRTDAQSLRESSYVSLPVIALCDTDSPLNYVDIAIPCNNKGKESIALMYWLLAREVLYLRDQLKRWMPWDVLVDTFFWR 205          
The following BLAST results are available for this feature:
BLAST of FC878290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_YARLI2.020e-6460.1040S ribosomal protein S0 OS=Yarrowia lipolytica GN... [more]
RSSA2_SCHPO2.638e-6460.2040S ribosomal protein S0-B OS=Schizosaccharomyces ... [more]
RSSA_TOXGO4.500e-6460.2040S ribosomal protein SA OS=Toxoplasma gondii PE=2... [more]
RSSA_DICDI2.233e-6360.7040S ribosomal protein SA OS=Dictyostelium discoide... [more]
RSSA_CHLVR4.975e-6361.1140S ribosomal protein SA OS=Chlorohydra viridissim... [more]
RSSA_USTMA5.500e-6256.2240S ribosomal protein S0 OS=Ustilago maydis GN=RPS... [more]
RSSA_BRUMA3.565e-6158.0040S ribosomal protein SA OS=Brugia malayi GN=Bm1_4... [more]
RSSA_THEAN4.656e-6154.4140S ribosomal protein SA OS=Theileria annulata GN=... [more]
RSSA_LACTC7.942e-6158.5540S ribosomal protein S0 OS=Lachancea thermotolera... [more]
RSSA_THEPA1.037e-6053.9240S ribosomal protein SA OS=Theileria parva GN=TP0... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA12AH01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878290 ID=FC878290; Name=FC878290; organism=Citrus clementina; type=EST; length=904bp
CAGAAGTCTCCGTCGGTACCACGAGTCTCAGCTTTCTCTCGCAGGTTTTG
AGAAATAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCTCTCTC
AGAAAGAGGCTGACATTCAGATGATGTTAGCAGCCGAAGTTCATTTGGGT
ACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGCCGAAA
CGATGGAATTTATATTATCAATCTTGGCAAGACTTGGGAGAAGCTACAGA
TGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTATTGTC
CAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCAAAGTA
CACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATTTACCA
ATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAACAGAT
CCACGAACAGACCATCAGCCAATTAAGGAAGCTGCTCTTGGAAACATTCC
CACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGATATTG
GCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCTTCTGG
CTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCACTATTCGTCCTGGCCA
CAAGTGGGATGTGATGGTCGATCTGTTCTTCTACAGGGAGCCAGAAGAAA
CCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTATTGATTATGCTACAGCA
GAGTACAGCATGAATCTTACCAGTGGTGAGCAATGGCCTTCCCAAATTGC
TGATGGTGGGTGGGCGGGTGGTGAAGTTCAGAAGCCCATTCCTGTTGTTC
CCTATTTCCCAGAAGCAGCACCAGCAGCTACAGTTTCTTTGGGGGGGGGA
TGGA
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