FC878290

Overview
NameFC878290
Unique NameFC878290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878290_ssr712 microsatellite FC878290_ssr712:712..723. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13510 contig Ccv1_Contig13510:39..942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_PLAVI (40S ribosomal protein SA OS=Plasmodium vivax GN=PVX_111380 PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.265e-66
Identity = 120/197 (60.91%), Postives = 151/197 (76.65%), Query Frame = 1
Query:   97 SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++I+NL KT+EKLQ+AAR+IVAI NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD QP+KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL ++GT+     W VMVD+F +R
Sbjct:    8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHILNLAKTYEKLQLAARIIVAINNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFTEPRLLIVTDPRTDAQPVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYLKGTLPRSKPWKVMVDMFLWR 204          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA3_SCHJY (40S ribosomal protein S0-C OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps0c PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.265e-66
Identity = 120/201 (59.70%), Postives = 151/201 (75.12%), Query Frame = 1
Query:   85 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            P  L+  E DI+ +LAA  H+G+KN + +ME YV+KRR DG+ IIN+GKTWEK+ +AAR+I  +ENP D+ V S+RPYG RAVLKFA +T A AIAGR TPG FTN +  +F EPRL+I TDPR D Q IKEA+  NIP IA CDTDSP+ +VD+ IP NNKG  SIG ++WLLAR VL++RG +     WDVMVD++FYR
Sbjct:    8 PSVLNATEEDIKQLLAASCHIGSKNLEIRMENYVWKRRADGVNIINIGKTWEKIVLAARIIATVENPADVCVVSSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTFREPRLIIATDPRADAQAIKEASYVNIPVIALCDTDSPLAHVDVAIPTNNKGYKSIGLVWWLLAREVLRLRGALTRTGAWDVMVDMYFYR 208          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_PNECA (40S ribosomal protein S0 OS=Pneumocystis carinii GN=RPS0 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.652e-66
Identity = 121/199 (60.80%), Postives = 158/199 (79.40%), Query Frame = 1
Query:   97 SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAH-AIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR 687
            +Q  ADI+M+++A  H+G++NC+ +ME YVFKRR DG++IINLGK WEKL +AAR+IV IENP DII  S+R YGQRAV K+A +T A  AI+ R TPG+FTN +  S+ EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP++YVD+ IP NNKG+HSIG ++W+LAR VL++RGT+     +W +MVDL+FYR
Sbjct:    6 AQPAADIEMLISANCHIGSRNCELRMEPYVFKRRADGVHIINLGKRWEKLILAARIIVTIENPTDIIAVSSRSYGQRAVHKYALHTGAREAISSRFTPGSFTNYITRSYKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPLQYVDVAIPTNNKGRHSIGLIWWMLAREVLRLRGTLANRDVEWGIMVDLYFYR 204          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_PENCW (40S ribosomal protein S0 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=rps0 PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.158e-66
Identity = 123/207 (59.42%), Postives = 157/207 (75.85%), Query Frame = 1
Query:   82 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 687
            AP QL    +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ ++N+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++RGT+     +WD +VDL+FYR
Sbjct:    2 APSQLPPVFNPTAQDIEMLLAAQCHLGSKNLQVHMEPYLWKLRADGVNVLNIGKTWEKIVLAARIIAAIDNPADVCVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHAIGLVWWMLAREVLRLRGTLATRETEWDTVVDLYFYR 208          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_PLACH (40S ribosomal protein SA OS=Plasmodium chabaudi GN=PC000391.02.0 PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.818e-66
Identity = 121/197 (61.42%), Postives = 151/197 (76.65%), Query Frame = 1
Query:   97 SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++IINL KT+EKLQ+AARVIVA+ NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q +KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL ++G+I     WDVMVD+F +R
Sbjct:    8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHIINLAKTYEKLQLAARVIVAVSNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFIEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYLKGSIPRSQAWDVMVDMFLWR 204          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_PLABA (40S ribosomal protein SA OS=Plasmodium berghei (strain Anka) GN=PB000415.00.0 PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.818e-66
Identity = 121/197 (61.42%), Postives = 151/197 (76.65%), Query Frame = 1
Query:   97 SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++IINL KT+EKLQ+AARVIVA+ NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q +KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL ++G+I     WDVMVD+F +R
Sbjct:    8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHIINLAKTYEKLQLAARVIVAVSNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFIEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYLKGSIPRSQAWDVMVDMFLWR 204          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_MALGO (40S ribosomal protein S0 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.681e-66
Identity = 122/202 (60.40%), Postives = 153/202 (75.74%), Query Frame = 1
Query:   85 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR 687
            P  L+    DI ++LAA+ H+GTKNC+  M  YV KRR DGI++IN+GKTWEKL  AARV+ A+ENP DI V S+R YG RAV KFA  T A AIAGR TPG+FTN +  SF EPR++++TDPR DHQ I+E+A  NIP IA CDTD+P+R+VDI IP NNKG+HSIG L+WLL R  L++RG + R  + W+VMVD+FFYR
Sbjct:    6 PAILNPTPEDISLLLAAQTHIGTKNCEKAMLPYVHKRRADGIHLINIGKTWEKLVFAARVLAAVENPADICVISSRTYGHRAVHKFAANTGATAIAGRFTPGSFTNYITRSFKEPRVIVVTDPRVDHQAIRESAYVNIPVIALCDTDAPLRHVDIAIPGNNKGRHSIGLLWWLLCREFLRLRGIVPRTPNGWNVMVDMFFYR 207          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_PLAF7 (40S ribosomal protein SA OS=Plasmodium falciparum (isolate 3D7) GN=PF10_0264 PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.279e-66
Identity = 120/197 (60.91%), Postives = 150/197 (76.14%), Query Frame = 1
Query:   97 SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++IINL KT+EKLQ+AAR+IVAI NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q +KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL ++G I     W+VMVD+F +R
Sbjct:    8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHIINLAKTYEKLQLAARIIVAISNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFTEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYLKGVIPRSEPWNVMVDMFLWR 204          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA_NANOT (40S ribosomal protein S0 OS=Nannizzia otae (strain CBS 113480) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.279e-66
Identity = 118/193 (61.14%), Postives = 152/193 (78.76%), Query Frame = 1
Query:  112 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 687
            D++MML A+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+++TDPRTD Q IKEA+  NIP IA CD DSP  +VD+ IP NNKG+H+IG ++W+LAR VL++RGT+     +WD++VDL+FYR
Sbjct:   16 DMEMMLTAQCHLGSKNMQTHMEPYLWKTRPDGVNVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALCDADSPTEFVDVAIPTNNKGRHAIGLVWWMLAREVLRLRGTLASRETEWDIVVDLYFYR 208          
BLAST of FC878290 vs. ExPASy Swiss-Prot
Match: RSSA1_SCHPO (40S ribosomal protein S0-A OS=Schizosaccharomyces pombe GN=rps0a PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 9.066e-65
Identity = 118/201 (58.71%), Postives = 152/201 (75.62%), Query Frame = 1
Query:   85 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            P  L+  + DI+ +LAA  H+G+KN + +M+ YV+KRR+DG++I+NLGKTWEKL +AARVI  IENP D+ V S R YG RAVLKFA +T A AIAGR TPG FTN +  ++ EPRL+++TDPR D Q IKEA+  NIP IA CDTDS + +VDI IP NNKG+ SIG +++LLAR VL++RGT+     WDVM DL+FYR
Sbjct:    7 PNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYR 207          
The following BLAST results are available for this feature:
BLAST of FC878290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_PLAVI1.265e-6660.9140S ribosomal protein SA OS=Plasmodium vivax GN=PV... [more]
RSSA3_SCHJY1.265e-6659.7040S ribosomal protein S0-C OS=Schizosaccharomyces ... [more]
RSSA_PNECA1.652e-6660.8040S ribosomal protein S0 OS=Pneumocystis carinii G... [more]
RSSA_PENCW2.158e-6659.4240S ribosomal protein S0 OS=Penicillium chrysogenu... [more]
RSSA_PLACH2.818e-6661.4240S ribosomal protein SA OS=Plasmodium chabaudi GN... [more]
RSSA_PLABA2.818e-6661.4240S ribosomal protein SA OS=Plasmodium berghei (st... [more]
RSSA_MALGO3.681e-6660.4040S ribosomal protein S0 OS=Malassezia globosa (st... [more]
RSSA_PLAF76.279e-6660.9140S ribosomal protein SA OS=Plasmodium falciparum ... [more]
RSSA_NANOT6.279e-6661.1440S ribosomal protein S0 OS=Nannizzia otae (strain... [more]
RSSA1_SCHPO9.066e-6558.7140S ribosomal protein S0-A OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA12AH01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878290 ID=FC878290; Name=FC878290; organism=Citrus clementina; type=EST; length=904bp
CAGAAGTCTCCGTCGGTACCACGAGTCTCAGCTTTCTCTCGCAGGTTTTG
AGAAATAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCTCTCTC
AGAAAGAGGCTGACATTCAGATGATGTTAGCAGCCGAAGTTCATTTGGGT
ACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGCCGAAA
CGATGGAATTTATATTATCAATCTTGGCAAGACTTGGGAGAAGCTACAGA
TGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTATTGTC
CAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCAAAGTA
CACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATTTACCA
ATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAACAGAT
CCACGAACAGACCATCAGCCAATTAAGGAAGCTGCTCTTGGAAACATTCC
CACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGATATTG
GCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCTTCTGG
CTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCACTATTCGTCCTGGCCA
CAAGTGGGATGTGATGGTCGATCTGTTCTTCTACAGGGAGCCAGAAGAAA
CCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTATTGATTATGCTACAGCA
GAGTACAGCATGAATCTTACCAGTGGTGAGCAATGGCCTTCCCAAATTGC
TGATGGTGGGTGGGCGGGTGGTGAAGTTCAGAAGCCCATTCCTGTTGTTC
CCTATTTCCCAGAAGCAGCACCAGCAGCTACAGTTTCTTTGGGGGGGGGA
TGGA
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