FC878291

Overview
NameFC878291
Unique NameFC878291
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length859
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878291_ssr226 microsatellite FC878291_ssr226:226..237. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878291_ssr20 microsatellite FC878291_ssr20:20..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11840 contig Ccv1_Contig11840:9..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: MP2K2_CHICK (Dual specificity mitogen-activated protein kinase kinase 2 OS=Gallus gallus GN=MAP2K2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.636e-15
Identity = 44/122 (36.07%), Postives = 76/122 (62.30%), Query Frame = 1
Query:  508 ELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLE----GAHIRQEHILSDLARQVLSGLAYL-HKRKILH 858
            + ++ + +G+G+GG V +V H P+  + A K+I+   + ++R+QI RE+++L + N P +V  +  +  +GEI + +E+MDGGSL+     A    E IL  ++  VL GLAYL  K +I+H
Sbjct:   69 DFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMH 190          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: MP2K2_HUMAN (Dual specificity mitogen-activated protein kinase kinase 2 OS=Homo sapiens GN=MAP2K2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.054e-15
Identity = 44/122 (36.07%), Postives = 76/122 (62.30%), Query Frame = 1
Query:  508 ELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLE----GAHIRQEHILSDLARQVLSGLAYL-HKRKILH 858
            + ++ + +G+G+GG V +V H P+  + A K+I+   + ++R+QI RE+++L + N P +V  +  +  +GEI + +E+MDGGSL+     A    E IL  ++  VL GLAYL  K +I+H
Sbjct:   71 DFERISELGAGNGGVVTKVQHRPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMH 192          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: MP2K2_CANFA (Dual specificity mitogen-activated protein kinase kinase 2 OS=Canis familiaris GN=MAP2K2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.054e-15
Identity = 44/122 (36.07%), Postives = 76/122 (62.30%), Query Frame = 1
Query:  508 ELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLE----GAHIRQEHILSDLARQVLSGLAYL-HKRKILH 858
            + ++ + +G+G+GG V +V H P+  + A K+I+   + ++R+QI RE+++L + N P +V  +  +  +GEI + +E+MDGGSL+     A    E IL  ++  VL GLAYL  K +I+H
Sbjct:   71 DFERISELGAGNGGVVTKVQHRPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMH 192          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: M2K2_ARATH (Mitogen-activated protein kinase kinase 2 OS=Arabidopsis thaliana GN=MKK2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.054e-15
Identity = 49/115 (42.61%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  529 IGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGS----LEGAHIRQEHILSDLARQVLSGLAYL-HKRKILH 858
            IG GS G V  V H  T + FALKVI  N ++++R  I +E++I +    PN+V  +  +  NG I ++LEYMDGGS    L+      +  LS + RQVL GL YL H R I+H
Sbjct:   76 IGKGSSGVVQLVQHKWTGQFFALKVIQLNIDEAIRKAIAQELKINQSSQCPNLVTSYQSFYDNGAISLILEYMDGGSLADFLKSVKAIPDSYLSAIFRQVLQGLIYLHHDRHIIH 190          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: DSOR1_DROME (Dual specificity mitogen-activated protein kinase kinase dSOR1 OS=Drosophila melanogaster GN=Dsor1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.349e-14
Identity = 45/126 (35.71%), Postives = 74/126 (58.73%), Query Frame = 1
Query:  496 INPAELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLE----GAHIRQEHILSDLARQVLSGLAYLH-KRKILH 858
            ++  +L+K   +GSG+GG V +V H  T  + A K+I+   + +++ QI RE+++L + N P++V  +  +  +GEI + +EYMDGGSL+     A    E IL  +   VL GL+YL     I+H
Sbjct:   82 LSDEDLEKLGELGSGNGGVVMKVRHTHTHLIMARKLIHLEVKPAIKKQILRELKVLHECNFPHIVGFYGAFYSDGEISICMEYMDGGSLDLILKRAGRIPESILGRITLAVLKGLSYLRDNHAIIH 207          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: M2K1_ARATH (Mitogen-activated protein kinase kinase 1 OS=Arabidopsis thaliana GN=MKK1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.761e-14
Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  505 AELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLEGAHIR----QEHILSDLARQVLSGLAYL-HKRKILH 858
            A+L+    IG GS G V  V H  T + FALKVI  N E+S    I +E+ I      P +V C+  +  NG + ++LE+MDGGSL     +     E++LS + ++VL GL Y+ H+R+I+H
Sbjct:   66 ADLEVIKVIGKGSSGNVQLVKHKLTQQFFALKVIQLNTEESTCRAISQELRINLSSQCPYLVSCYQSFYHNGLVSIILEFMDGGSLADLLKKVGKVPENMLSAICKRVLRGLCYIHHERRIIH 188          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: MP2K2_RAT (Dual specificity mitogen-activated protein kinase kinase 2 OS=Rattus norvegicus GN=Map2k2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.301e-14
Identity = 44/122 (36.07%), Postives = 75/122 (61.48%), Query Frame = 1
Query:  508 ELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLE----GAHIRQEHILSDLARQVLSGLAYL-HKRKILH 858
            + ++ + +G+G+GG V +  H P+  + A K+I+   + +VR+QI RE+++L + N P +V  +  +  +GEI + +E+MDGGSL+     A    E IL  ++  VL GLAYL  K +I+H
Sbjct:   71 DFERISELGAGNGGVVTKARHRPSGLIMARKLIHLEIKPAVRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEDILGKVSIAVLRGLAYLREKHQIMH 192          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: MP2K2_MOUSE (Dual specificity mitogen-activated protein kinase kinase 2 OS=Mus musculus GN=Map2k2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.005e-14
Identity = 44/122 (36.07%), Postives = 75/122 (61.48%), Query Frame = 1
Query:  508 ELQKGNRIGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLE----GAHIRQEHILSDLARQVLSGLAYL-HKRKILH 858
            + ++ + +G+G+GG V +  H P+  + A K+I+   + +VR+QI RE+++L + N P +V  +  +  +GEI + +E+MDGGSL+     A    E IL  ++  VL GLAYL  K +I+H
Sbjct:   71 DFERISELGAGNGGVVTKARHRPSGFIMARKLIHLEIKPAVRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEDILGKVSIAVLRGLAYLREKHQIMH 192          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: MP2K2_CYPCA (Dual specificity mitogen-activated protein kinase kinase 2 OS=Cyprinus carpio GN=map2k2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.005e-14
Identity = 44/115 (38.26%), Postives = 71/115 (61.74%), Query Frame = 1
Query:  529 IGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLE----GAHIRQEHILSDLARQVLSGLAYL-HKRKILH 858
            +G+G+GG V +V H P+  V A K+I+   + ++R+QI RE+++L + N P +V  +  +  +GEI + +E+MDGGSL+     A    E IL  ++  VL GL YL  K +I+H
Sbjct:   75 LGAGNGGVVHKVRHKPSRLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEARRIPEEILGKVSIAVLRGLVYLREKHQIMH 189          
BLAST of FC878291 vs. ExPASy Swiss-Prot
Match: M2K1_ORYSJ (Mitogen-activated protein kinase kinase 1 OS=Oryza sativa subsp. japonica GN=MEK1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.005e-14
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  529 IGSGSGGTVWRVVHPPTSRVFALKVIYGNHEDSVRSQICREIEILRDVNHPNVVKCHDMYDRNGEIEVLLEYMDGGSLEGAHIRQ-----EHILSDLARQVLSGLAYL-HKRKILH 858
            IG GSGG V  V H     ++ALK I  N +++VR QI +E++I +   + ++V CH  +  NG I ++LEYMD GSL    I+Q     E  L+ L +QVL GL YL H+R ++H
Sbjct:   77 IGKGSGGIVQLVRHKWVGTLYALKGIQMNIQEAVRKQIVQELKINQATQNAHIVLCHQSFYHNGVIYLVLEYMDRGSLADI-IKQVKTILEPYLAVLCKQVLEGLLYLHHERHVIH 191          
The following BLAST results are available for this feature:
BLAST of FC878291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
MP2K2_CHICK4.636e-1536.07Dual specificity mitogen-activated protein kinase ... [more]
MP2K2_HUMAN6.054e-1536.07Dual specificity mitogen-activated protein kinase ... [more]
MP2K2_CANFA6.054e-1536.07Dual specificity mitogen-activated protein kinase ... [more]
M2K2_ARATH6.054e-1542.61Mitogen-activated protein kinase kinase 2 OS=Arabi... [more]
DSOR1_DROME1.349e-1435.71Dual specificity mitogen-activated protein kinase ... [more]
M2K1_ARATH1.761e-1439.02Mitogen-activated protein kinase kinase 1 OS=Arabi... [more]
MP2K2_RAT2.301e-1436.07Dual specificity mitogen-activated protein kinase ... [more]
MP2K2_MOUSE3.005e-1436.07Dual specificity mitogen-activated protein kinase ... [more]
MP2K2_CYPCA3.005e-1438.26Dual specificity mitogen-activated protein kinase ... [more]
M2K1_ORYSJ3.005e-1442.24Mitogen-activated protein kinase kinase 1 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ7YA10RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ7YA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878291 ID=FC878291; Name=FC878291; organism=Citrus clementina; type=EST; length=859bp
CTCTCTCCATTTTTCCTTCCAAACAAACAAAAGCTCATGGTATGGATTCT
TAACAACAAAATCAAACCACCGAAAATCTCATTACATCTTCCAATCCAAT
GATCATTTCTTGCGTGAAAAAAATTCAACCTTTCTTTCATTAAAAAAAAA
ATTTAAAACAAATTCACCTTCAACTCCGTTTTACACCGAGACTAGCCGGC
GTAATCATCGATGAGACCTGTTCTACCGCCGCCGCCGAGCGGCTTATCCT
CCTCGTCCTCTTCCTCGTCCTCCTCTCCGTCGTCATCATTGGCCAATCGC
AGAGGTCAACGCCGGAGACCGGACCTCACGCTGCCAATCCCGCAGCGGGA
CCCATCCTTGGCCGTCCCCCTTCCGTTACCGCCGACGTCAAACTCGTCCT
CTTCCTCCGGTCAGTCGACGAGCCACCAGAACCACCACCCTCACCAGCAG
CAGCAAAACCAAACTCAGAACAACCACCAGAACCGGCACCAGCTCATCAA
CCCGGCTGAGCTCCAGAAAGGAAACCGAATCGGCAGCGGCAGCGGCGGCA
CGGTCTGGAGAGTCGTCCACCCGCCGACGTCGCGCGTGTTCGCGCTCAAG
GTAATATACGGTAACCACGAGGACTCCGTCAGATCTCAGATCTGCCGTGA
AATCGAGATCCTCCGCGACGTTAATCACCCTAACGTCGTTAAGTGTCACG
ACATGTACGACCGTAACGGCGAGATAGAGGTCCTGTTAGAGTACATGGAC
GGTGGATCCCTAGAAGGGGCCCACATAAGACAGGAGCACATATTATCTGA
TTTAGCTAGACAAGTATTAAGTGGATTAGCGTATTTACACAAACGAAAAA
TCCTACACC
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