FC878296

Overview
NameFC878296
Unique NameFC878296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.478e-25
Identity = 82/256 (32.03%), Postives = 133/256 (51.95%), Query Frame = 1
Query:  133 SCSQTPYPEICNHYTATNFLSNLELDQTQFSFRDLNLKVTIDQAIH--AHKLISTMDLSSFNK--LAKLALVDCKDLYDDTVNHLNRSMSS-----SNPIDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITKSTVSS---SSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRE-NVEIKRSMKNLM 861
            +C  T +PE+C      + L +        S +DL + VT++  +H  +H L S+  LS  +    A+ A   C +L DD+V+ L+R++SS     + P D  TWLSAA+ N +TC  GF   +       +     N S+L+SN LAI  ++      + +P   +R  G       FP W+   +R +L+      +AD++V++DG+G  KTISE +  A +    ++R++IYVK G Y E N+++ R   NLM
Sbjct:   90 ACELTRFPELC-----VDSLMDFPGSLAASSSKDL-IHVTVNMTLHHFSHALYSSASLSFVDMPPRARSAYDSCVELLDDSVDALSRALSSVVSSSAKPQDVTTWLSAALTNHDTCTEGFDGVDDGGVKDHMTAALQNLSELVSNCLAIFSASHDGDDFAGVPIQNRRLLGVEEREEKFPRWMRPKEREILEMPVSQIQADIIVSKDGNGTCKTISEAIKKAPQ--NSTRRIIIYVKAGRYEENNLKVGRKKINLM 337          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME35_ARATH (Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.224e-23
Identity = 84/266 (31.58%), Postives = 139/266 (52.26%), Query Frame = 1
Query:   88 FLIFSLNFAHGELITSCSQTPYPEICNHYTATNFLSNLELDQTQFSFRDLNLKVTIDQAIHAHKLISTMDLS--SFNKLAKLALVDCKDLYDDTVNHLNRSM---SSSNPIDSV-TWLSAAIANQETCKNGFTD-FNLHSHLQSLPFMSGNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVN-GFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            FL+ +L      +    S + + +I  H  + +         +   F   ++++++D A+ A  L   + LS  +   L    + DC +L DDT++ L R +      +  D V TWLSAA+ NQETCK   ++  + +    ++   + N + LL+NSL +  S    SS   +    GGR+LL +  FPTWVS++DR+LL++S    +   VVA DGSG + +++E +A+  K   GS R VI++  G Y+EN+ I    KN+M
Sbjct:   20 FLVLNLLSLQTSVFAHSSNSKFTKISRHPNSDSSSRTKPSTSSNKGFLS-SVQLSLDHALFARSLAFNLTLSHRTSQTLMLDPVNDCLELLDDTLDMLYRIVVIKRKDHVNDDVHTWLSAALTNQETCKQSLSEKSSFNKEGIAIDSFARNLTGLLTNSLDMFVSDKQKSSS--SSNLTGGRKLLSDHDFPTWVSSSDRKLLEASVEELRPHAVVAADGSGTHMSVAEALASLEK---GSGRSVIHLTAGTYKENLNIPSKQKNVM 279          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.768e-22
Identity = 77/233 (33.05%), Postives = 114/233 (48.93%), Query Frame = 1
Query:  199 LELDQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSN------------PIDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            L++  T+F+    +LK TID       ++S    +  +     A+ DC DL D + + LN S+S+S               D  TWLSAA+ NQ+TC NGF   N          + G  S  L    ++ +  ++          N  ++      P+WV   DR+LLQ+ GV    D +VAQDG+GN+  +++ V AA       +R VIY+KRG Y+ENVEIK+   NLM
Sbjct:   49 LKVSATEFAG---SLKDTIDAVQQVASILSQFANAFGDFRLANAISDCLDLLDFSADELNWSLSASQNQKGKNNSTGKLSSDLRTWLSAALVNQDTCSNGFEGTN--------SIVQGLISAGLGQVTSLVQELLTQ------VHPNSNQQGPNGQIPSWVKTKDRKLLQADGVS--VDAIVAQDGTGNFTNVTDAVLAAPDYS--MRRYVIYIKRGTYKENVEIKKKKWNLM 260          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.309e-22
Identity = 78/222 (35.14%), Postives = 112/222 (50.45%), Query Frame = 1
Query:  244 KVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSNP------------IDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKL---LSNSLAITKSTVSSSSI-PYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            K  +D    A  ++S  D  +       A+VDC DL D     L+  +S+S               D  TW+SAA++NQ+TC +GF   N    ++ +  ++G  SK+   + N L +  S  S     P   +         + FP+WV   DR+LLQ+  +   AD VVA DG+GN+ TIS+ V AA      +KR VI+VKRGVY ENVEIK+   N+M
Sbjct:   52 KTVVDAITKAVAIVSKFDKKAGKSRVSNAIVDCVDLLDSAAEELSWIISASQSPNGKDNSTGDVGSDLRTWISAALSNQDTCLDGFEGTN--GIIKKI--VAGGLSKVGTTVRNLLTMVHSPPSKPKPKPIKAQTMTKAHSGFSKFPSWVKPGDRKLLQTDNI-TVADAVVAADGTGNFTTISDAVLAAPDYS--TKRYVIHVKRGVYVENVEIKKKKWNIM 266          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.717e-22
Identity = 83/279 (29.75%), Postives = 135/279 (48.39%), Query Frame = 1
Query:  112 AHGELITSCSQTPYPEICNHYTATNFLSNLELDQTQFSFRDLNLKVTIDQAIHAHKLISTM--DLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSNPI-----------DSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSG--NFSKLLSNSLAITKSTVSSSSIPY-------AYKRNGGRRLLV-------NGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            +H  L + CS T YPE+C  ++A       EL  +Q    + +L +T     H +  +  +             AL DC +  D+T++ L+ ++   +             D  T +S+AI NQ TC +GF+  +    ++    + G  +   + SN+LA+ K+   +    +        +  N  R+L         +G+P W+S  DRRLLQ S +  KAD  VA DGSG++ T++  VAAA +    +KR VI++K GVYRENVE+ +   N+M
Sbjct:   58 SHAILKSVCSSTLYPELC--FSAVAATGGKELT-SQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKA-LLKGQVHVEHMCSNALAMIKNMTETDIANFELRDKSSTFTNNNNRKLKEVTGDLDSDGWPKWLSVGDRRLLQGSTI--KADATVADDGSGDFTTVAAAVAAAPEKS--NKRFVIHIKAGVYRENVEVTKKKTNIM 328          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.773e-22
Identity = 78/254 (30.71%), Postives = 123/254 (48.43%), Query Frame = 1
Query:  133 SCSQTPYPEICNHYTATNFLSNLELDQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSS-------SNPIDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSG--NFSKLLSNSLAITKSTVSS-SSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVY-RENVEIKRSMKNLM 861
            +CS++ YP +C   T  +F  +L  D+ +      N   T+ +   A    ST+  +      + A   C +L DD+V+ L R++SS        +  D +TWLS+A+ N +TC +GF +            +    + S+++SN LAI    V   S +P    R           P W+   DR LL +     +AD+ V++DGSG +KTI+E +  A +    S+R VIYVK G Y  EN+++ R   NLM
Sbjct:   78 TCSKSLYPNLCID-TLLDFPGSLTADENELIHISFN--ATLQKFSKALYTSSTITYTQMPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDESHSDVMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVIGAVKDLSEMVSNCLAIFAGKVKDLSGVPVVNNRKLLGTEETEELPNWLKREDRELLGTPTSAIQADITVSKDGSGTFKTIAEAIKKAPE--HSSRRFVIYVKAGRYEEENLKVGRKKTNLM 326          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.146e-21
Identity = 92/268 (34.33%), Postives = 132/268 (49.25%), Query Frame = 1
Query:  124 LITSCSQTPYPEICNHYTATNFLSNLELDQT----QFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSNPI--------------DSVTWLSAAIANQETCKNGFTDFNLHSHL-QSLPFMSGNFSKLLSNSLAITKSTV---SSSSIPYAYKRNGGRRLL-VNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNL 858
            L T C+ T YP  C      + +S L L +T    +  FR L+L+VT D+      L   +   + ++  K AL  C D++D  V+ +N ++SS + +              D +TWLS+A+ +  TC +   + N +S + Q L     N ++  SNSLAI    +   S S IP       GRRLL  N FP WV    RRLLQ+  + P   V VA DGSG+ +T++E V    K   G    VIYVK G Y ENV +K+   N+
Sbjct:  459 LRTVCNVTNYPASC-----ISSISKLPLSKTTTDPKVLFR-LSLQVTFDELNSIVGLPKKLAEETNDEGLKSALSVCADVFDLAVDSVNDTISSLDEVISGGKKNLNSSTIGDLITWLSSAVTDIGTCGDTLDEDNYNSPIPQKLKSAMVNSTEFTSNSLAIVAQVLKKPSKSRIPVQ-----GRRLLNSNSFPNWVRPGVRRLLQAKNLTP--HVTVAADGSGDVRTVNEAVWRVPK--KGKTMFVIYVKAGTYVENVLMKKDKWNV 711          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.553e-21
Identity = 86/256 (33.59%), Postives = 135/256 (52.73%), Query Frame = 1
Query:  130 TSCSQTPYPEICNHYTATNFLSNLELDQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDD----TVNHLNR-SMSSSNPIDSV-----TWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLL-SNSLAITKS-TVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGV-GPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNL 858
            T CS T Y +IC             LD      +     V  D  +   K++S   L + N+  K A+  CK L +D    TV  LN+ +++  N  + V     +WLSA ++ QETC +GF + NL S +++    S N S++L SNSLA+ K+ T + S +    +R+     L++G P+WVS  DRR+L++  V   K +  VA+DGSG++ TI++ + A  +   G  R +IYVK+G+Y E V + +   NL
Sbjct:  111 TLCSSTLYMQICEKTLKNRTDKGFALDNPTTFLKSAIEAVNEDLDLVLEKVLS---LKTENQDDKDAIEQCKLLVEDAKEETVASLNKINVTEVNSFEKVVPDLESWLSAVMSYQETCLDGFEEGNLKSEVKT----SVNSSQVLTSNSLALIKTFTENLSPVMKVVERH-----LLDGIPSWVSNDDRRMLRAVDVKALKPNATVAKDGSGDFTTINDALRAMPEKYEG--RYIIYVKQGIYDEYVTVDKKKANL 352          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.334e-21
Identity = 84/260 (32.31%), Postives = 130/260 (50.00%), Query Frame = 1
Query:  136 CSQTPYPEICNHYTATNFLSNLELDQTQFSFRDLNLKVTIDQ-AIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMS----------SSNPIDSV-TWLSAAIANQETCKNGFTDFN---LHSHLQSLPFMSGNFSKLLSNSLAITKSTV---SSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            C  T YP  C  +++ + L        +  F+ L+L+V ID+ +    KL +  +  +  +L K A+  C  ++ D ++ LN S+S          SS  + +V TWLSAA+ +Q+TC +   + N       LQ +     N ++  SNSLAI    +   S    P  +     RRLL  GFP W+ AA+RRLL+        D VVA+DGSG +KTI E +    K     +R  +YVK G Y EN+++ ++  N+M
Sbjct:   81 CDTTRYPSSC--FSSISSLPESNTTDPELLFK-LSLRVAIDELSSFPSKLRANAEQDA--RLQK-AIDVCSSVFGDALDRLNDSISALGTVAGRIASSASVSNVETWLSAALTDQDTCLDAVGELNSTAARGALQEIETAMRNSTEFASNSLAIVTKILGLLSRFETPIHH-----RRLL--GFPEWLGAAERRLLEEKNNDSTPDAVVAKDGSGQFKTIGEALKLVKK--KSEERFSVYVKEGRYVENIDLDKNTWNVM 325          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.687e-21
Identity = 86/279 (30.82%), Postives = 126/279 (45.16%), Query Frame = 1
Query:  100 SLNFAHGELITSCSQTPYPEICNHYTATNFLSNLELDQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLA---KLALVDCKDLYDDTVNHLNRSMS--------SSNPIDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITKSTVSSSSIPYAYKR---------NGGRRLLVNGFPTWVSAADRRLLQSSGVG-----PKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            SLN       + C  TPYP+ C  +T+     ++ +     SF    L+  + +A     L+S   +S  N L    + +L DCKDL+  T + L RS+S        S    D+  +LSAA+ N+ TC            L+ L   SG     L  S   T   +S+S      +R         N   R L+  FP WV   D R L+ S  G     P   +VVA DG+GN+ TI+E ++ A  +   + RV+IYVK GVY EN++I     N++
Sbjct:   29 SLNPHETSATSFCKNTPYPDAC--FTSLKLSISINISPNILSFLLQTLQTALSEAGKLTDLLSGAGVS--NNLVEGQRGSLQDCKDLHHITSSFLKRSISKIQDGVNDSRKLADARAYLSAALTNKITC------------LEGLESASGPLKPKLVTSFTTTYKHISNSLSALPKQRRTTNPKTGGNTKNRRLLGLFPDWVYKKDHRFLEDSSDGYDEYDPSESLVVAADGTGNFSTINEAISFAPNM--SNDRVLIYVKEGVYDENIDIPIYKTNIV 289          
The following BLAST results are available for this feature:
BLAST of FC878296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
PME34_ARATH8.478e-2532.03Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME35_ARATH1.224e-2331.58Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME_PRUPE1.768e-2233.05Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME32_ARATH2.309e-2235.14Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME2_ARATH6.717e-2229.75Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME61_ARATH8.773e-2230.71Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME26_ARATH1.146e-2134.33Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME13_ARATH2.553e-2133.59Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME3_PHAVU3.334e-2132.31Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME12_ARATH5.687e-2130.82Probable pectinesterase/pectinesterase inhibitor 1... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA50AB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA50AB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878296 ID=FC878296; Name=FC878296; organism=Citrus clementina; type=EST; length=862bp
CATAATTCAATCATACCAAAACTCTATAGCTAGCAAGCCTTTTTGGTCTC
TATGGATAAGCTTGTGCTCATCCAACTTTTTATTCATTTTCTAATTTTTT
CTTTAAACTTTGCGCATGGTGAATTAATAACATCGTGTAGCCAGACCCCA
TATCCTGAAATATGCAACCACTACACGGCCACTAATTTTTTATCAAACTT
GGAGCTAGATCAAACCCAATTCTCTTTTCGTGACCTAAACCTTAAGGTCA
CCATTGACCAAGCCATACACGCTCACAAACTTATTTCGACTATGGACTTG
AGTTCATTCAATAAGCTAGCCAAGTTAGCTTTGGTCGATTGCAAGGATCT
TTACGACGATACAGTTAATCATCTCAATCGTTCGATGAGCTCTAGCAATC
CGATTGATTCTGTAACTTGGCTAAGTGCAGCTATTGCCAATCAAGAAACA
TGCAAAAACGGGTTCACTGATTTTAATTTGCATTCTCATCTACAATCCTT
GCCATTTATGTCAGGCAACTTCTCCAAGTTGCTTAGCAATTCACTGGCTA
TAACTAAGTCCACAGTTTCATCTTCATCAATACCGTATGCTTATAAAAGG
AACGGTGGCCGACGGTTACTTGTCAATGGATTTCCAACGTGGGTATCCGC
CGCTGATCGAAGACTTCTCCAGTCAAGTGGGGTGGGGCCAAAAGCTGATG
TTGTGGTGGCACAAGACGGGTCTGGTAATTACAAGACCATTTCAGAGGGT
GTGGCTGCAGCTGTCAAACTAGGAGGTGGAAGTAAAAGAGTTGTCATTTA
CGTGAAAAGGGGTGTGTATAGAGAGAATGTTGAGATTAAGAGATCTATGA
AGAACTTGATGT
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