FC878296

Overview
NameFC878296
Unique NameFC878296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.427e-21
Identity = 88/298 (29.53%), Postives = 140/298 (46.98%), Query Frame = 1
Query:   43 LVSMDKLVLIQLFIHFLIF-----SLNFAHGELITS-------CSQTPYPEICN---HYTATNFLSNLELDQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSS-----NPIDSVT-----WLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            ++S+  ++LI + +   I      S N    E+ TS       C+ T Y E C       A +    LEL +T F+        T+ Q     K   TM     +  AK+AL  CK+L D  +  L++S         + +D        WLSA I++++TC +GF     ++  +++        +L  N LA+  + +S+            RRLL   FP+W+ A  RRLL +     K D+VVAQDGSG YKTI+E +    K    +   V+++K G+Y+E V++ RSM +L+
Sbjct:   18 IISISSVLLISMVVAVTIGVSVNKSDNAGDEEITTSVKAIKDVCAPTDYKETCEDTLRKDAKDTSDPLELVKTAFN-------ATMKQISDVAKKSQTMIELQKDPRAKMALDQCKELMDYAIGELSKSFEELGKFEFHKVDEALVKLRIWLSATISHEQTCLDGFQGTQGNAG-ETIKKALKTAVQLTHNGLAMV-TEMSNYLGQMQIPEMNSRRLLSQEFPSWMDARARRLLNAPMSEVKPDIVVAQDGSGQYKTINEALNFVPK--KKNTTFVVHIKEGIYKEYVQVNRSMTHLV 304          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.655e-20
Identity = 80/260 (30.77%), Postives = 123/260 (47.31%), Query Frame = 1
Query:  136 CSQTPYPEICNHY---TATNFLSNLELDQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSNP----------IDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITKST---VSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGV--GPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            C+ T Y + C         N    +EL +T F+       VT+ Q   A K   T+     +   ++AL  CK+L D  ++ L+ S                I+   WLSAAI+++ETC  GF     ++  +++        +L  N LAI       V    IP        RRLL  GFP+WV    R+LLQ++      K D+VVAQDGSG YKTI+E +    K    +   V+++K G+Y+E V++ ++M +L+
Sbjct:   62 CAPTDYRKTCEDTLIKNGKNTTDPMELVKTAFN-------VTMKQITDAAKKSQTIMELQKDSRTRMALDQCKELMDYALDELSNSFEELGKFEFHLLDEALINLRIWLSAAISHEETCLEGFQGTQGNAG-ETMKKALKTAIELTHNGLAIISEMSNFVGQMQIPGL----NSRRLLAEGFPSWVDQRGRKLLQAAAAYSDVKPDIVVAQDGSGQYKTINEALQFVPK--KRNTTFVVHIKAGLYKEYVQVNKTMSHLV 307          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.655e-20
Identity = 91/270 (33.70%), Postives = 128/270 (47.41%), Query Frame = 1
Query:  136 CSQTPYPEICNHYTATNFLSNLELDQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLN------------RSMSSSNPIDSVTWLSAAIANQETC-------KNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITK---STVSSSSIPYAYKRNGGRRLLVN------GFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            CS T +PE C    +    SN    +T F    L+LKV ID+      L   +   + ++  K AL  C DL +D ++ LN            +++SSS   D  TWLSA + + ETC       K   T++   +  Q+L       ++  SNSLAI     S +S   IP   +    RRL+ +       F  W   A RRLLQ++G+ P  DV VA DG+G+  T++E VA   K     K  VIYVK G Y ENV + +S  N+M
Sbjct:   77 CSVTRFPESCISSISKLPSSNTTDPETLFK---LSLKVIIDELDSISDLPEKLSKETEDERIKSALRVCGDLIEDALDRLNDTVSAIDDEEKKKTLSSSKIEDLKTWLSATVTDHETCFDSLDELKQNKTEYANSTITQNLKSAMSRSTEFTSNSLAIVSKILSALSDLGIPIHRR----RRLMSHHHQQSVDFEKW---ARRRLLQTAGLKP--DVTVAGDGTGDVLTVNEAVAKVPK--KSLKMFVIYVKSGTYVENVVMDKSKWNVM 332          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME16_ARATH (Probable pectinesterase/pectinesterase inhibitor 16 OS=Arabidopsis thaliana GN=PME16 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.072e-19
Identity = 65/179 (36.31%), Postives = 96/179 (53.63%), Query Frame = 1
Query:  337 DCKDLYDDTVNHLNRSMSSSNPIDSVTWLSAAIANQETCKNGFTD-FNLHSHLQSLPFMSGNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVNG--FPTWV-SAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            DC +L DDT++ L+R  + ++  D  TWLSAA+ NQ+TC+    +    + H  ++ F++ N + LL++SL +  S  S             R+LL     FPT+V S+  RRLL++       D VVA DGSG +KTI E +  +  L     R  IY+K G Y EN+ I    KN+M
Sbjct:  100 DCLELLDDTLDMLSRIHADNDEEDVHTWLSAALTNQDTCEQSLQEKSESYKHGLAMDFVARNLTGLLTSSLDLFVSVKSKH-----------RKLLSKQEYFPTFVPSSEQRRLLEAPVEELNVDAVVAPDGSGTHKTIGEAL-LSTSLASSGGRTKIYLKAGTYHENINIPTKQKNVM 266          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME38_ARATH (Putative pectinesterase/pectinesterase inhibitor 38 OS=Arabidopsis thaliana GN=PME38 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.829e-19
Identity = 78/247 (31.58%), Postives = 118/247 (47.77%), Query Frame = 1
Query:  136 CSQTPYPEICNHYTATNFLSNLELDQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSNPI----DSVTWLSAAIANQETCKNGFTDFNLHSH-LQSLPFMSGNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            C +TP+P  C     T  + +  +  T   F  ++++ T+D A+ A      ++   F   +K A  +C DLY+ T++ LN S+     +    D   WLS A+ N +TC+   ++  + SH L+S+          + N+LAI K                  R+  NG    +S    + L    +G K DVVVAQDGSG+YKTI E V  A +   GS R VI+VK+GVY E V +     N+M
Sbjct:    8 CDETPHPGECK----TLLIKHKPIRSTT-QFLQVSVERTLDGAVKAKSDTYFLE-PQFG--SKQAWEECMDLYEQTIHRLNESVLCPKNVCSRSDVQAWLSTALTNLDTCQEEMSELGVSSHSLESITID-------VINTLAINK------------------RMEQNGKEFGISKITMKTLS---IGEKVDVVVAQDGSGDYKTIQEAVNGAGERLKGSPRYVIHVKQGVYEEYVNVGIKSNNIM 218          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.389e-19
Identity = 85/291 (29.21%), Postives = 134/291 (46.05%), Query Frame = 1
Query:   58 KLVLIQLFIHFL-IFSLNFAHGELITS---CSQTPYPEIC----NHYTATNFLSNLELDQTQFSFRDLNLKVTIDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYD-------DTVNHL-NRSMSSSNPIDSVTWLSAAIANQETCKNGF----TDFN---LHSHLQSLPFMSGNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            K+    L I F  + S  F+  EL      C Q+   E C    +  T  N   +  L ++        ++   + A  A + I+       N   + AL+DC +L D       D+++ L ++++++ +  D   WLS  + N  TC +G     TD+    + SHL  L  +    S  +  +L   KS V                 +   FPTWV+A DRRLLQ+ G   + D+VVA+DGSG+Y+T++E VAA        KRV++ V+ G+Y ENV+     KN+M
Sbjct:   18 KITFFLLVISFAALVSTGFSSPELSLHHKICDQSVNKESCLAMISEVTGLNMADHRNLLKSFLEKTTPRIQKAFETANDASRRIN-------NPQERTALLDCAELMDLSKERVVDSISILFHQNLTTRSHEDLHVWLSGVLTNHVTCLDGLEEGSTDYIKTLMESHLNEL-ILRARTSLAIFVTLFPAKSNVIEP--------------VTGNFPTWVTAGDRRLLQTLGKDIEPDIVVAKDGSGDYETLNEAVAAIP--DNSKKRVIVLVRTGIYEENVDFGYQKKNVM 284          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.389e-19
Identity = 67/204 (32.84%), Postives = 112/204 (54.90%), Query Frame = 1
Query:  280 LISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSS----SNPIDSV----TWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPK--ADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            ++S   + S     K    DC+++ D + + +  SM      +  ++S     TWLS+ + N  TC    +D +++S     P +    S+    +LAI  S + +        R+  + ++ N FP+W++A DR+LL+SS    K  A+VVVA+DG+G +KT++E VAAA +    + R VIYVK+GVY+E ++I +  KNLM
Sbjct:  106 MVSEARIRSNGVRDKAGFADCEEMMDVSKDRMMSSMEELRGGNYNLESYSNVHTWLSSVLTNYMTCLESISDVSVNSKQIVKPQLEDLVSRARV-ALAIFVSVLPA--------RDDLKMIISNRFPSWLTALDRKLLESSPKTLKVTANVVVAKDGTGKFKTVNEAVAAAPE--NSNTRYVIYVKKGVYKETIDIGKKKKNLM 298          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 80/280 (28.57%), Postives = 132/280 (47.14%), Query Frame = 1
Query:   67 LIQLFIHFLI---FSLNFAHGELITSCSQTPYPEICNHYTATNFLSNLELDQTQFSFRDLNLKVTID---QAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSM------SSSNPIDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNS---LAITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            +I LF+   +   + +   H  L   C      ++C  Y + + +SN E+  T+     + +K  ++   Q  +A  ++  M     +     AL DC +L D +V+  + S+      S S   ++ +WLS  + N  TC +    F              N  +L+S +   LA+  S  +     +          ++   P+WVS+ DR+L++SSG    A+ VVAQDG+G+Y+T++E VAAA        R VIYVKRG Y+ENVE+  +  NLM
Sbjct:   27 VITLFVALFLVAPYQVEIKHSNL---CKTAQDSQLCLSYVS-DLISN-EIVTTESDGHSILMKFLVNYVHQMNNAIPVVRKMKNQINDIRQHGALTDCLELLDQSVDFASDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELDSFT------KAMINGTNLEELISRAKVALAMLASLTTQDEDVFM--------TVLGKMPSWVSSMDRKLMESSGKDIIANAVVAQDGTGDYQTLAEAVAAAP--DKSKTRYVIYVKRGTYKENVEVASNKMNLM 285          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.186e-18
Identity = 63/184 (34.24%), Postives = 97/184 (52.72%), Query Frame = 1
Query:  328 ALVDCKDLYDDTVNHLNRSM------SSSNPIDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            AL DC +L D +V+ ++ S+      S S   ++ +WLS  + N  TC +  T F+L +        +G     L     +  + ++S + P       G    +   P WVS+ DR+L++SSG    A+ VVAQDG+G+Y+T++E VAAA        R VIYVK G+Y+ENV + +   NLM
Sbjct:  114 ALTDCLELLDQSVDLVSDSIAAIDKRSRSEHANAQSWLSGVLTNHVTCLDELTSFSLSTK-------NGTVLDELITRAKVALAMLASVTTPNDEVLRQG----LGKMPYWVSSRDRKLMESSGKDIIANRVVAQDGTGDYQTLAEAVAAAP--DKNKTRYVIYVKMGIYKENVVVTKKKMNLM 284          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.549e-18
Identity = 87/275 (31.64%), Postives = 131/275 (47.64%), Query Frame = 1
Query:   91 LIFSLNFAHGELITSCSQTPYPEICNHYTATNFLSNLELDQTQFSFRDLNLKVT--IDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSS----SNPIDSVTWL-SAAIANQETCKNGFT----DFNLHSH-------LQSLPFMSGNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            +I SL F    L+   S      +   +T+++ ++ L +     +  ++NL  +   D        +S  DL +F+        DC +L DDTV  L  ++S     S  + +V  L SAA+ N  TC +GF     D NL+++        +SL     N S  +S+SLA+ ++      IP   K + G       FP WVS +DR LLQ      K ++VVAQ+G+GNY TI E ++AA        R VIY+K G Y EN+EI R    +M
Sbjct:    8 IILSLTF----LLLFLSTVFSSHVTQRFTSSDDITELVVTALNQTISNVNLSSSNFSDLLQRLGSNLSHRDLCAFD--------DCLELLDDTVFDLTTAISKLRSHSPELHNVKMLLSAAMTNTRTCLDGFASSDNDENLNNNDNKTYGVAESLKESLFNISSHVSDSLAMLENI--PGHIPGKVKEDVG-------FPMWVSGSDRNLLQDPVDETKVNLVVAQNGTGNYTTIGEAISAAP--NSSETRFVIYIKCGEYFENIEIPREKTMIM 259          
The following BLAST results are available for this feature:
BLAST of FC878296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
PME28_ARATH7.427e-2129.53Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME21_ARATH1.655e-2030.77Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME1_ARATH1.655e-2033.70Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PME16_ARATH1.072e-1936.31Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME38_ARATH1.829e-1931.58Putative pectinesterase/pectinesterase inhibitor 3... [more]
PME1_FICAW2.389e-1929.21Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]
PME18_ARATH2.389e-1932.84Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME1_SOLLC5.323e-1928.57Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]
PME3_SOLLC1.186e-1834.24Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME40_ARATH1.549e-1831.64Probable pectinesterase/pectinesterase inhibitor 4... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA50AB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA50AB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878296 ID=FC878296; Name=FC878296; organism=Citrus clementina; type=EST; length=862bp
CATAATTCAATCATACCAAAACTCTATAGCTAGCAAGCCTTTTTGGTCTC
TATGGATAAGCTTGTGCTCATCCAACTTTTTATTCATTTTCTAATTTTTT
CTTTAAACTTTGCGCATGGTGAATTAATAACATCGTGTAGCCAGACCCCA
TATCCTGAAATATGCAACCACTACACGGCCACTAATTTTTTATCAAACTT
GGAGCTAGATCAAACCCAATTCTCTTTTCGTGACCTAAACCTTAAGGTCA
CCATTGACCAAGCCATACACGCTCACAAACTTATTTCGACTATGGACTTG
AGTTCATTCAATAAGCTAGCCAAGTTAGCTTTGGTCGATTGCAAGGATCT
TTACGACGATACAGTTAATCATCTCAATCGTTCGATGAGCTCTAGCAATC
CGATTGATTCTGTAACTTGGCTAAGTGCAGCTATTGCCAATCAAGAAACA
TGCAAAAACGGGTTCACTGATTTTAATTTGCATTCTCATCTACAATCCTT
GCCATTTATGTCAGGCAACTTCTCCAAGTTGCTTAGCAATTCACTGGCTA
TAACTAAGTCCACAGTTTCATCTTCATCAATACCGTATGCTTATAAAAGG
AACGGTGGCCGACGGTTACTTGTCAATGGATTTCCAACGTGGGTATCCGC
CGCTGATCGAAGACTTCTCCAGTCAAGTGGGGTGGGGCCAAAAGCTGATG
TTGTGGTGGCACAAGACGGGTCTGGTAATTACAAGACCATTTCAGAGGGT
GTGGCTGCAGCTGTCAAACTAGGAGGTGGAAGTAAAAGAGTTGTCATTTA
CGTGAAAAGGGGTGTGTATAGAGAGAATGTTGAGATTAAGAGATCTATGA
AGAACTTGATGT
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