FC878296
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.364e-13 Identity = 72/251 (28.69%), Postives = 115/251 (45.82%), Query Frame = 1 Query: 100 SLNFAH-GELITSCSQTPYPEICNHYTATNFLSNLE-LDQTQF----SFRDLNLKVT-IDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSNPI--------DSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMS---GNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVI 798 ++ FA+ E+ CS T Y +C +L+ LD F + D NL + + ++ + KL+S D S++ + C+ L + L ++M + N D TWLSAA+ Q+ CK+ D S ++ +S + S+L+SNSL + + + +N + P WV+A +RRLL +A VVVA+DGSG+Y+T+ E V AA G G VI Sbjct: 26 NMPFAYQNEMQRHCSSTKYTSLCVQNLREFRHGSLDGLDFVSFLVNKTISDSNLLIPPLSSSMGSSKLVSLED-STYTLPSPSVSDSCERLMKMSTRRLRQAMEALNGSSRKRHTKHDVQTWLSAAMTFQQACKDSILDSGGSSSASAISHISQKMDHLSRLVSNSLTLVDTIM----------KNPKPKTKSTALPRWVTAGERRLLVGRA---RAHVVVAKDGSGDYRTVMEAVTAA--HGNGKDLTVI 260
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.270e-12 Identity = 57/204 (27.94%), Postives = 97/204 (47.55%), Query Frame = 1 Query: 253 IDQAIHA-HKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSNPIDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSL----AITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSM 849 +D A+ HK + T+D F+KL++ A D WL+ +++Q+TC +GF + + +++ + +L SN++ A+++ + Y+ R R L +G P+WV+ RRLL V P A VVAQDGSG +KT+++ + + VI+VK GVY+E V + + M Sbjct: 8 LDYAVDGIHKSVGTLDQFDFHKLSEYAF------------------------DLKVWLTGTLSHQQTCLDGFANTTTKAG-ETMTKVLKTSMELSSNAIDMMDAVSRILKGFDTSQYSVSR---RLLSDDGIPSWVNDGHRRLLAGGNVQPNA--VVAQDGSGQFKTLTDALKTVPP--KNAVPFVIHVKAGVYKETVNVAKEM 179
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME39_ARATH (Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.404e-11 Identity = 62/229 (27.07%), Postives = 105/229 (45.85%), Query Frame = 1 Query: 232 DLNLKVT-IDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMS----SSNPIDSVTWLSAAIAN-QETCKNGFTDFNLHSHLQSLPFMSGNFSKL-------LSNSLAIT------KSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861 DLNL + ++ A + T + + A DC L DDT++ L ++S SS + ++ L + Q+TC +GF+ + ++ + N ++ LSNSL + K + SS + Y P+W+S D+RLL++ ++ VA DG+GN+ TI++ V AA + R +IY+K G Y ENVE+ + +M Sbjct: 60 DLNLTILKVNLASSNFSDLQTRLFPNLTHYERCAFEDCLGLLDDTISDLETAVSDLRSSSLEFNDISMLLTNVMTYQDTCLDGFSTSDNENNNDMTYELPENLKEIILDISNNLSNSLHMLQVISRKKPSPKSSEVDVEY-------------PSWLSENDQRLLEAPVQETNYNLSVAIDGTGNFTTINDAVFAAPNM--SETRFIIYIKGGEYFENVELPKKKTMIM 273
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11 Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 1 Query: 583 PYAYKRNGGRRLLVN----GFPTWVSAADRRLLQSSGVGP-------KADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNL 858 P A RRLL + G PTWVS ADR+L+ +G G +A VVA+DGSG +KT+ + V A + G R +I++K G+YRE V I + N+ Sbjct: 234 PVADPDGPARRLLEDIDETGIPTWVSGADRKLMTKAGRGSNDGGARIRATFVVAKDGSGQFKTVQQAVNACPEKNPG--RCIIHIKAGIYREQVIIPKKKNNI 334 The following BLAST results are available for this feature:
BLAST of FC878296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 44
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878296 ID=FC878296; Name=FC878296; organism=Citrus clementina; type=EST; length=862bpback to top |