FC878296

Overview
NameFC878296
Unique NameFC878296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.364e-13
Identity = 72/251 (28.69%), Postives = 115/251 (45.82%), Query Frame = 1
Query:  100 SLNFAH-GELITSCSQTPYPEICNHYTATNFLSNLE-LDQTQF----SFRDLNLKVT-IDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSNPI--------DSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMS---GNFSKLLSNSLAITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVI 798
            ++ FA+  E+   CS T Y  +C          +L+ LD   F    +  D NL +  +  ++ + KL+S  D S++   +      C+ L   +   L ++M + N          D  TWLSAA+  Q+ CK+   D    S   ++  +S    + S+L+SNSL +  + +          +N   +      P WV+A +RRLL       +A VVVA+DGSG+Y+T+ E V AA   G G    VI
Sbjct:   26 NMPFAYQNEMQRHCSSTKYTSLCVQNLREFRHGSLDGLDFVSFLVNKTISDSNLLIPPLSSSMGSSKLVSLED-STYTLPSPSVSDSCERLMKMSTRRLRQAMEALNGSSRKRHTKHDVQTWLSAAMTFQQACKDSILDSGGSSSASAISHISQKMDHLSRLVSNSLTLVDTIM----------KNPKPKTKSTALPRWVTAGERRLLVGRA---RAHVVVAKDGSGDYRTVMEAVTAA--HGNGKDLTVI 260          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.270e-12
Identity = 57/204 (27.94%), Postives = 97/204 (47.55%), Query Frame = 1
Query:  253 IDQAIHA-HKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMSSSNPIDSVTWLSAAIANQETCKNGFTDFNLHSHLQSLPFMSGNFSKLLSNSL----AITKSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSM 849
            +D A+   HK + T+D   F+KL++ A                         D   WL+  +++Q+TC +GF +    +  +++  +     +L SN++    A+++      +  Y+  R   R L  +G P+WV+   RRLL    V P A  VVAQDGSG +KT+++ +         +   VI+VK GVY+E V + + M
Sbjct:    8 LDYAVDGIHKSVGTLDQFDFHKLSEYAF------------------------DLKVWLTGTLSHQQTCLDGFANTTTKAG-ETMTKVLKTSMELSSNAIDMMDAVSRILKGFDTSQYSVSR---RLLSDDGIPSWVNDGHRRLLAGGNVQPNA--VVAQDGSGQFKTLTDALKTVPP--KNAVPFVIHVKAGVYKETVNVAKEM 179          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME39_ARATH (Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.404e-11
Identity = 62/229 (27.07%), Postives = 105/229 (45.85%), Query Frame = 1
Query:  232 DLNLKVT-IDQAIHAHKLISTMDLSSFNKLAKLALVDCKDLYDDTVNHLNRSMS----SSNPIDSVTWLSAAIAN-QETCKNGFTDFNLHSHLQSLPFMSGNFSKL-------LSNSLAIT------KSTVSSSSIPYAYKRNGGRRLLVNGFPTWVSAADRRLLQSSGVGPKADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNLM 861
            DLNL +  ++ A      + T    +     + A  DC  L DDT++ L  ++S    SS   + ++ L   +   Q+TC +GF+  +  ++      +  N  ++       LSNSL +       K +  SS +   Y             P+W+S  D+RLL++       ++ VA DG+GN+ TI++ V AA  +     R +IY+K G Y ENVE+ +    +M
Sbjct:   60 DLNLTILKVNLASSNFSDLQTRLFPNLTHYERCAFEDCLGLLDDTISDLETAVSDLRSSSLEFNDISMLLTNVMTYQDTCLDGFSTSDNENNNDMTYELPENLKEIILDISNNLSNSLHMLQVISRKKPSPKSSEVDVEY-------------PSWLSENDQRLLEAPVQETNYNLSVAIDGTGNFTTINDAVFAAPNM--SETRFIIYIKGGEYFENVELPKKKTMIM 273          
BLAST of FC878296 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11
Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  583 PYAYKRNGGRRLLVN----GFPTWVSAADRRLLQSSGVGP-------KADVVVAQDGSGNYKTISEGVAAAVKLGGGSKRVVIYVKRGVYRENVEIKRSMKNL 858
            P A      RRLL +    G PTWVS ADR+L+  +G G        +A  VVA+DGSG +KT+ + V A  +   G  R +I++K G+YRE V I +   N+
Sbjct:  234 PVADPDGPARRLLEDIDETGIPTWVSGADRKLMTKAGRGSNDGGARIRATFVVAKDGSGQFKTVQQAVNACPEKNPG--RCIIHIKAGIYREQVIIPKKKNNI 334          
The following BLAST results are available for this feature:
BLAST of FC878296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
PME54_ARATH4.364e-1328.69Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME_MEDSA1.270e-1227.94Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME39_ARATH1.404e-1127.07Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME5_ARATH9.100e-1139.81Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA50AB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA50AB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878296 ID=FC878296; Name=FC878296; organism=Citrus clementina; type=EST; length=862bp
CATAATTCAATCATACCAAAACTCTATAGCTAGCAAGCCTTTTTGGTCTC
TATGGATAAGCTTGTGCTCATCCAACTTTTTATTCATTTTCTAATTTTTT
CTTTAAACTTTGCGCATGGTGAATTAATAACATCGTGTAGCCAGACCCCA
TATCCTGAAATATGCAACCACTACACGGCCACTAATTTTTTATCAAACTT
GGAGCTAGATCAAACCCAATTCTCTTTTCGTGACCTAAACCTTAAGGTCA
CCATTGACCAAGCCATACACGCTCACAAACTTATTTCGACTATGGACTTG
AGTTCATTCAATAAGCTAGCCAAGTTAGCTTTGGTCGATTGCAAGGATCT
TTACGACGATACAGTTAATCATCTCAATCGTTCGATGAGCTCTAGCAATC
CGATTGATTCTGTAACTTGGCTAAGTGCAGCTATTGCCAATCAAGAAACA
TGCAAAAACGGGTTCACTGATTTTAATTTGCATTCTCATCTACAATCCTT
GCCATTTATGTCAGGCAACTTCTCCAAGTTGCTTAGCAATTCACTGGCTA
TAACTAAGTCCACAGTTTCATCTTCATCAATACCGTATGCTTATAAAAGG
AACGGTGGCCGACGGTTACTTGTCAATGGATTTCCAACGTGGGTATCCGC
CGCTGATCGAAGACTTCTCCAGTCAAGTGGGGTGGGGCCAAAAGCTGATG
TTGTGGTGGCACAAGACGGGTCTGGTAATTACAAGACCATTTCAGAGGGT
GTGGCTGCAGCTGTCAAACTAGGAGGTGGAAGTAAAAGAGTTGTCATTTA
CGTGAAAAGGGGTGTGTATAGAGAGAATGTTGAGATTAAGAGATCTATGA
AGAACTTGATGT
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