FC878298

Overview
NameFC878298
Unique NameFC878298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDK6_MOUSE (Cell division protein kinase 6 OS=Mus musculus GN=Cdk6 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.375e-48
Identity = 104/211 (49.29%), Postives = 144/211 (68.25%), Query Frame = 2
Query:  230 QYEKVEKIGEGTYGVVYKARNCVTN-ETIALKKIRLEQEDEGVPSTAIREISLLKEMQ---HGNIVRLQDV-----VHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            QYE V +IGEG YG V+KAR+       +ALK++R++  +EG+P + IRE+++L+ ++   H N+VRL DV        E KL LVFE++D DL  ++D  P+       IK  ++Q+LRG+ + HSHRV+HRDLKPQN+L+   +  +KLADFGLAR +   +   T  VVTLWYRAPE+LL S  Y+TPVD+WSVGCIFAEM  ++ LF
Sbjct:   12 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTSEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILV-TSSGQIKLADFGLARIYSFQM-ALTSVVVTLWYRAPEVLLQS-SYATPVDLWSVGCIFAEMFRRKPLF 219          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDK11_RAT (Cell division protein kinase 11 OS=Rattus norvegicus GN=Cdk11 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.795e-48
Identity = 94/206 (45.63%), Postives = 145/206 (70.39%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK--KLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            +++++ + +I EGTYGVVY+A++  T+E +ALK++++E+E EG P T+IREI+ + + QH NIV ++++V      K+Y+V  Y++ DLK  M++       P  +KT + Q+L G+ + H + +LHRDLK  NLL+      LK+ DFGLAR +G P++ +T  VVTLWYRAPE+LLG++ YST  D+WSVGCIF E++ Q+ LF
Sbjct:   76 VEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPLTSIREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQ-PFLPGEVKTLMIQLLSGVKHLHDNWILHRDLKTSNLLLTH-AGILKVGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYSTACDMWSVGCIFGELLTQKPLF 279          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: KP58_DROME (Serine/threonine-protein kinase PITSLRE OS=Drosophila melanogaster GN=Pitslre PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.345e-48
Identity = 96/208 (46.15%), Postives = 145/208 (69.71%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK--KLYLVFEYLDLDLKKHMDSCPDFAND--PRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            +++++ + +I EGTYGVVY+A++  TNE +ALK++++E+E EG P T++REI+ L + QH NIV ++++V      K+++V +Y++ DLK  M++  +      P  +K    Q+LR +A+ H + +LHRDLK  NLL+  +   LK+ DFGLAR +G P++ +T  VVTLWYRAPE+LL S  YSTP+DVWSVGCIFAE +    LF
Sbjct:  555 VEEFQCLNRIEEGTYGVVYRAKDKRTNEIVALKRLKMEKEKEGFPITSLREINTLLKGQHPNIVTVREIVVGSNMDKIFIVMDYVEHDLKSLMETMKNRKQSFFPGEVKCLTQQLLRAVAHLHDNWILHRDLKTSNLLLSHK-GILKVGDFGLAREYGSPIKKYTSLVVTLWYRAPELLLCSPVYSTPIDVWSVGCIFAEFLQMLPLF 761          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDK6_HUMAN (Cell division protein kinase 6 OS=Homo sapiens GN=CDK6 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.345e-48
Identity = 104/211 (49.29%), Postives = 144/211 (68.25%), Query Frame = 2
Query:  230 QYEKVEKIGEGTYGVVYKARNCVTN-ETIALKKIRLEQEDEGVPSTAIREISLLKEMQ---HGNIVRLQDV-----VHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            QYE V +IGEG YG V+KAR+       +ALK++R++  +EG+P + IRE+++L+ ++   H N+VRL DV        E KL LVFE++D DL  ++D  P+       IK  ++Q+LRG+ + HSHRV+HRDLKPQN+L+   +  +KLADFGLAR +   +   T  VVTLWYRAPE+LL S  Y+TPVD+WSVGCIFAEM  ++ LF
Sbjct:   12 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILV-TSSGQIKLADFGLARIYSFQM-ALTSVVVTLWYRAPEVLLQS-SYATPVDLWSVGCIFAEMFRRKPLF 219          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDKG1_ORYSJ (Cyclin-dependent kinase G-1 OS=Oryza sativa subsp. japonica GN=CDKG-1 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.164e-47
Identity = 90/206 (43.69%), Postives = 146/206 (70.87%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            +D++E++  I EGTYGVV++ R+  T E +ALKK+++E+E EG P T++RE+++L    H +IV +++VV   +++ +++V EY++ DLK  M++     +    +K  + Q+L G+ Y H + VLHRDLK  NLL++ R   LK+ DFGL+R +G P++ +T  VVTLWYRAPE+LLG++ YST +D+WS+GCI  E++++  LF
Sbjct:  346 VDEFERLNTINEGTYGVVFRVRDKRTGEIVALKKVKMEKEREGFPLTSLREMNILLSFHHPSIVEVKEVVVGSNDRDIFMVMEYMEHDLKGVMETMKQPYSQSE-VKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNR-GELKICDFGLSRQYGSPLKPYTQLVVTLWYRAPELLLGAKDYSTAIDMWSLGCIMGELLSKGPLF 549          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDKG1_ORYSI (Cyclin-dependent kinase G-1 OS=Oryza sativa subsp. indica GN=CDKG-1 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.164e-47
Identity = 90/206 (43.69%), Postives = 146/206 (70.87%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            +D++E++  I EGTYGVV++ R+  T E +ALKK+++E+E EG P T++RE+++L    H +IV +++VV   +++ +++V EY++ DLK  M++     +    +K  + Q+L G+ Y H + VLHRDLK  NLL++ R   LK+ DFGL+R +G P++ +T  VVTLWYRAPE+LLG++ YST +D+WS+GCI  E++++  LF
Sbjct:  346 VDEFERLNTINEGTYGVVFRVRDKRTGEIVALKKVKMEKEREGFPLTSLREMNILLSFHHPSIVEVKEVVVGSNDRDIFMVMEYMEHDLKGVMETMKQPYSQSE-VKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNR-GELKICDFGLSRQYGSPLKPYTQLVVTLWYRAPELLLGAKDYSTAIDMWSLGCIMGELLSKGPLF 549          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: PPK23_SCHPO (Serine/threonine-protein kinase ppk23 OS=Schizosaccharomyces pombe GN=ppk23 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.520e-47
Identity = 100/207 (48.31%), Postives = 136/207 (65.70%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSE--KKLYLVFEYLDLDLKKHMDSCP-DFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            +D YE +EKI EG+YG+VY+  +  TN  +ALKKI+ +    G P T++REI  L  ++H NIV L+ VV  +  K +YLV E+++ DLK  +D+ P DF      +KT + Q+L   A+ H H  LHRDLKP NLL++  T  +KLADFGLAR    P  + T  VVTLWYRAPE+LLG+  Y   +D+WS+GCIFAEM+ +  LF
Sbjct:   71 IDDYEILEKIEEGSYGIVYRGLDKSTNTLVALKKIKFDPNGIGFPITSLREIESLSSIRHDNIVELEKVVVGKDLKDVYLVMEFMEHDLKTLLDNMPEDFLQSE--VKTLMLQLLAATAFMHHHWYLHRDLKPSNLLMNN-TGEIKLADFGLARPVSEPKSSLTRLVVTLWYRAPELLLGAPSYGKEIDMWSIGCIFAEMITRTPLF 274          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDK7_MOUSE (Cell division protein kinase 7 OS=Mus musculus GN=Cdk7 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 3.386e-47
Identity = 94/199 (47.24%), Postives = 133/199 (66.83%), Query Frame = 2
Query:  230 QYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDE---GVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 817
            +YEK++ +GEG +  VYKAR+  TN+ +A+KKI+L    E   G+  TA+REI LL+E+ H NI+ L D    +  + LVF++++ DL+  +         P  IK ++   L+G+ Y H H +LHRDLKP NLL+D     LKLADFGLA++FG P R +TH+VVT WYRAPE+L G+R Y   VD+W+VGCI AE++
Sbjct:   11 RYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKD-NSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDEN-GVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELL 207          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDK7_HUMAN (Cell division protein kinase 7 OS=Homo sapiens GN=CDK7 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.386e-47
Identity = 94/199 (47.24%), Postives = 133/199 (66.83%), Query Frame = 2
Query:  230 QYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDE---GVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 817
            +YEK++ +GEG +  VYKAR+  TN+ +A+KKI+L    E   G+  TA+REI LL+E+ H NI+ L D    +  + LVF++++ DL+  +         P  IK ++   L+G+ Y H H +LHRDLKP NLL+D     LKLADFGLA++FG P R +TH+VVT WYRAPE+L G+R Y   VD+W+VGCI AE++
Sbjct:   11 RYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKD-NSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDEN-GVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELL 207          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: YP62_CAEEL (Putative serine/threonine-protein kinase B0495.2 OS=Caenorhabditis elegans GN=B0495.2 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.776e-47
Identity = 99/211 (46.92%), Postives = 145/211 (68.72%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREIS-LLKEMQHGNIVRLQDVVHSEK--KLYLVFEYLDLDLKKHMDSCPDFANDPRLI----KTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            +D+YE V ++ EGT+GVVY+ ++  T+E +ALK++++E+E EG P TA+REI+ LLK   H NIV +++++      K+Y+  E+++ D+K  +D+      + R      KT L Q+L GI + H   +LHRDLK  NLL+  +   LK+ADFGLAR +G P++ FT  VVTLWYR+PE+LLG+R YSTPVD+WSVGCI AE +  + LF
Sbjct:  353 IDEYECVNRVDEGTFGVVYRGKDKRTDEIVALKRLKMEKEKEGFPITALREINMLLKAGNHPNIVNVKEILLGSNMDKIYMAMEFVEHDMKSLLDTMS--RRNKRFSIGEQKTLLQQLLSGIEHMHKLWILHRDLKTSNLLMSHK-GILKIADFGLAREYGDPLKKFTSIVVTLWYRSPELLLGTRLYSTPVDMWSVGCIMAEFILLKPLF 560          
The following BLAST results are available for this feature:
BLAST of FC878298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK6_MOUSE1.375e-4849.29Cell division protein kinase 6 OS=Mus musculus GN=... [more]
CDK11_RAT1.795e-4845.63Cell division protein kinase 11 OS=Rattus norvegic... [more]
KP58_DROME2.345e-4846.15Serine/threonine-protein kinase PITSLRE OS=Drosoph... [more]
CDK6_HUMAN2.345e-4849.29Cell division protein kinase 6 OS=Homo sapiens GN=... [more]
CDKG1_ORYSJ1.164e-4743.69Cyclin-dependent kinase G-1 OS=Oryza sativa subsp.... [more]
CDKG1_ORYSI1.164e-4743.69Cyclin-dependent kinase G-1 OS=Oryza sativa subsp.... [more]
PPK23_SCHPO1.520e-4748.31Serine/threonine-protein kinase ppk23 OS=Schizosac... [more]
CDK7_MOUSE3.386e-4747.24Cell division protein kinase 7 OS=Mus musculus GN=... [more]
CDK7_HUMAN3.386e-4747.24Cell division protein kinase 7 OS=Homo sapiens GN=... [more]
YP62_CAEEL5.776e-4746.92Putative serine/threonine-protein kinase B0495.2 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA58BH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878298 ID=FC878298; Name=FC878298; organism=Citrus clementina; type=EST; length=837bp
TGCCTCCAATCACCTCACTCTTACTCCGGCGATCTCCCCCGTCGGCTTGG
ATCGTCCTCGCGTCTGTTACTGTATTATGCATTTGTATTTTTCTCTTTCG
TAAGCGGTTAATTTTTTCTTCATAACACACTGCCGCCACCTACGCCGTCG
ATTCGTGCCGTTCTTGTCGCCGTCCGTCGGTAGCAAGGACGCCTCGTTCG
TGTAGCTGTTACATTAAGACTGAATGGACCAGTATGAAAAGGTTGAGAAG
ATTGGTGAAGGAACCTATGGAGTAGTTTACAAGGCCCGTAATTGTGTCAC
GAATGAGACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAG
GTGTGCCTAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAG
CATGGGAACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACT
TTATCTGGTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATT
CTTGCCCAGATTTTGCTAATGATCCTCGTCTGATAAAAACATTCCTTTAT
CAAATTCTACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTTCATCG
AGATTTGAAACCACAAAATTTGCTAATAGATCGTCGTACGAATGCACTAA
AGCTTGCAGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTAGGACA
TTTACACATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACT
AGGATCTCGCCATTACTCTACTCCAGTTGATGTGTGGTCGGTGGGATGTA
TATTTGCTGAGATGGTGAACCAGCGGGCATTGTTTCC
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