FC878298

Overview
NameFC878298
Unique NameFC878298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12114 contig Ccv1_Contig12114:88..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC2_ORYJA (Cell division control protein 2 homolog OS=Oryzias javanicus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 3.472e-76
Identity = 136/205 (66.34%), Postives = 168/205 (81.95%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFA-NDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            M+ Y K+EKIGEGTYGVVYK R+  T + +A+KKIRLE E+EGVPSTA+RE+SLL+E++H N+VRL DV+  E +LYL+FE+L +DLKK++DS P     DP L+K++LYQIL GI +CH  RVLHRDLKPQNLLID +   +KLADFGLARAFG+PVR +THEVVTLWYRAPE+LLGS  YSTPVDVWS G IFAE+  ++ LF
Sbjct:    1 MEDYVKIEKIGEGTYGVVYKGRHKSTGQVVAMKKIRLESEEEGVPSTAVREVSLLQELKHPNVVRLLDVLMQESRLYLIFEFLSMDLKKYLDSIPSGQYMDPMLVKSYLYQILEGIYFCHRRRVLHRDLKPQNLLIDNK-GVIKLADFGLARAFGVPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDVWSTGTIFAELATKKPLF 204          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC2_HUMAN (Cell division control protein 2 homolog OS=Homo sapiens GN=CDC2 PE=1 SV=2)

HSP 1 Score: 285.034 bits (728), Expect = 3.472e-76
Identity = 135/205 (65.85%), Postives = 169/205 (82.44%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFA-NDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            M+ Y K+EKIGEGTYGVVYK R+  T + +A+KKIRLE E+EGVPSTAIREISLLKE++H NIV LQDV+  + +LYL+FE+L +DLKK++DS P     D  L+K++LYQIL+GI +CHS RVLHRDLKPQNLLID +   +KLADFGLARAFGIP+R +THE +TLWYR+PE+LLGS  YSTPVD+WS+G IFAE+  ++ LF
Sbjct:    1 MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVLMQDSRLYLIFEFLSMDLKKYLDSIPPGQYMDSSLVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDK-GTIKLADFGLARAFGIPIRVYTHEAITLWYRSPEVLLGSARYSTPVDIWSIGTIFAELATKKPLF 204          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC2_ORYCU (Cell division control protein 2 homolog OS=Oryzias curvinotus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 7.734e-76
Identity = 135/205 (65.85%), Postives = 168/205 (81.95%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFA-NDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            M+ Y K+EKIGEGTYGVVYK R+  T + +A+KKIRLE E+EGVPSTA+RE+SLL+E++H N+VRL DV+  E +LYL+FE+L +DLKK++DS P     DP L+K++LYQIL GI +CH  RVLHRDLKPQNLLID +   +KLADFGL+RAFG+PVR +THEVVTLWYRAPE+LLGS  YSTPVDVWS G IFAE+  ++ LF
Sbjct:    1 MEDYVKIEKIGEGTYGVVYKGRHKSTGQVVAMKKIRLESEEEGVPSTAVREVSLLQELKHPNVVRLLDVLMQESRLYLIFEFLSMDLKKYLDSIPSGQYMDPMLVKSYLYQILEGIYFCHRRRVLHRDLKPQNLLIDNK-GVIKLADFGLSRAFGVPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDVWSTGTIFAELATKKPLF 204          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC2_RANDY (Cell division control protein 2 homolog OS=Rana dybowskii GN=CDC2 PE=2 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.723e-75
Identity = 138/205 (67.32%), Postives = 170/205 (82.93%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFAN-DPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            MD+Y K+EKIGEGTYGVVYK  +  T + +A+KKIRLE E+EGVPSTAIREISLLKE+QH NIV L DV+  + +LYL+FE+L +DLKK++DS P     +  L+K++LYQIL+GI +CH+ RVLHRDLKPQNLLID +   +KLADFGLARAFGIPVR +THEVVTLWYRAPE+LLGS  YSTPVDVWS+G IFAE+ +++ LF
Sbjct:    1 MDEYAKIEKIGEGTYGVVYKGVHKATGQIVAMKKIRLENEEEGVPSTAIREISLLKELQHPNIVCLLDVLMQDSRLYLIFEFLSMDLKKYLDSIPSGQYLEAMLVKSYLYQILQGIIFCHARRVLHRDLKPQNLLIDSK-GVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSVRYSTPVDVWSIGTIFAEIASKKPLF 204          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC2_DROME (Cell division control protein 2 homolog OS=Drosophila melanogaster GN=cdc2 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.250e-75
Identity = 133/205 (64.88%), Postives = 169/205 (82.44%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCP-DFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            M+ +EK+EKIGEGTYGVVYK RN +T + +A+KKIRLE +DEGVPSTAIREISLLKE++H NIV L+DV+  E ++YL+FE+L +DLKK+MDS P D   +  L++++LYQI   I +CH  RVLHRDLKPQNLLID ++  +K+ADFGL R+FGIPVR +THE+VTLWYRAPE+LLGS  YS PVD+WS+GCIFAEM  ++ LF
Sbjct:    1 MEDFEKIEKIGEGTYGVVYKGRNRLTGQIVAMKKIRLESDDEGVPSTAIREISLLKELKHENIVCLEDVLMEENRIYLIFEFLSMDLKKYMDSLPVDKHMESELVRSYLYQITSAILFCHRRRVLHRDLKPQNLLID-KSGLIKVADFGLGRSFGIPVRIYTHEIVTLWYRAPEVLLGSPRYSCPVDIWSIGCIFAEMATRKPLF 204          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAYO (Cell division control protein 2 homolog OS=Plasmodium yoelii yoelii GN=CRK2 PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.250e-75
Identity = 142/205 (69.27%), Postives = 171/205 (83.41%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPST-AIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            M++Y  +EKIGEGTYGVVYKA+N    E+ ALKKIRLE+EDEG+PST +IREIS+LKE++H NIV+L DV+H++K+L LVFE+LD DLKK +D C D   +    K+FL Q+L GIAYCH HRVLHRDLKPQNLLI+R    LK+ADFGLARAFGIP R +THEVVTLWYRAP+IL+GS+ YSTP+D+WSVGCIFAEMVN R LF
Sbjct:    1 MEKYHGLEKIGEGTYGVVYKAQNS-DGESFALKKIRLEKEDEGIPSTVSIREISILKELRHSNIVKLYDVIHAKKRLILVFEHLDQDLKKLIDVC-DGGLESVTAKSFLLQLLNGIAYCHEHRVLHRDLKPQNLLINRE-GELKIADFGLARAFGIPARRYTHEVVTLWYRAPDILMGSKKYSTPIDIWSVGCIFAEMVNGRPLF 202          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC2_CHICK (Cell division control protein 2 homolog OS=Gallus gallus GN=CDC2 PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 5.013e-75
Identity = 136/205 (66.34%), Postives = 168/205 (81.95%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFAN-DPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            M+ Y K+EKIGEGTYGVVYK R+  T + +A+KKIRLE E+EGVPSTAIREISLLKE+ H NIV LQDV+  + +LYL+FE+L +DLKK++D+ P     D   +K++LYQIL+GI +CHS RVLHRDLKPQNLLID +   +KLADFGLARAFGIPVR +THEVVTLWYR+PE+LLGS  YSTPVD+WS+G IFAE+  ++ LF
Sbjct:    1 MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELHHPNIVCLQDVLMQDARLYLIFEFLSMDLKKYLDTIPSGQYLDRSRVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDK-GVIKLADFGLARAFGIPVRVYTHEVVTLWYRSPEVLLGSALYSTPVDIWSIGTIFAELATKKPLF 204          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAFK (Cell division control protein 2 homolog OS=Plasmodium falciparum (isolate K1 / Thailand) GN=CRK2 PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.488e-74
Identity = 139/204 (68.14%), Postives = 168/204 (82.35%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            M++Y  +EKIGEGTYGVVYKA+N    ET ALKKIRLE+EDEG+PST IREIS+LKE++H NIV+L DV+H++K+L LVFE+LD DLKK +D C +   +    K+FL Q+L GIAYCH  RVLHRDLKPQNLLI+R    LK+ADFGLARAFGIPVR +THEVVTLWYRAP++L+GS+ YST +D+WSVGCIFAEMVN   LF
Sbjct:    1 MEKYHGLEKIGEGTYGVVYKAQNNY-GETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVC-EGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINRE-GELKIADFGLARAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLF 201          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAF7 (Cell division control protein 2 homolog OS=Plasmodium falciparum (isolate 3D7) GN=CRK2 PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.488e-74
Identity = 139/204 (68.14%), Postives = 168/204 (82.35%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            M++Y  +EKIGEGTYGVVYKA+N    ET ALKKIRLE+EDEG+PST IREIS+LKE++H NIV+L DV+H++K+L LVFE+LD DLKK +D C +   +    K+FL Q+L GIAYCH  RVLHRDLKPQNLLI+R    LK+ADFGLARAFGIPVR +THEVVTLWYRAP++L+GS+ YST +D+WSVGCIFAEMVN   LF
Sbjct:    1 MEKYHGLEKIGEGTYGVVYKAQNNY-GETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVC-EGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINRE-GELKIADFGLARAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLF 201          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC2_AJECA (Cell division control protein 2 OS=Ajellomyces capsulata GN=CDC2 PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.543e-74
Identity = 146/225 (64.89%), Postives = 170/225 (75.56%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCV-TNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSE-KKLYLVFEYLDLDLKKHMDSCP-------------------DFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            M+ Y+K+EKIGEGTYGVVYKAR+    N  +ALKKIRLE EDEGVPSTAIREISLLKEM   NIVRL ++VH++  KLYLVFE+LDLDLKK+M++ P                          ++K F+ Q++ GI YCHSHRVLHRDLKPQNLLIDR  N LKLADFGLARAFG+P+RT+THEVVTLWYRAPEILLG R YST VD+WSVG IFAEM  ++ LF
Sbjct:    1 MENYQKIEKIGEGTYGVVYKARDLTHPNRIVALKKIRLEAEDEGVPSTAIREISLLKEMHDPNIVRLLNIVHADGHKLYLVFEFLDLDLKKYMEALPVSEGGRGKALPDGSTLDMNRLGLGEAMVKKFMAQLVEGIRYCHSHRVLHRDLKPQNLLIDREGN-LKLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGGRQYSTGVDMWSVGAIFAEMCTRKPLF 224          
The following BLAST results are available for this feature:
BLAST of FC878298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC2_ORYJA3.472e-7666.34Cell division control protein 2 homolog OS=Oryzias... [more]
CDC2_HUMAN3.472e-7665.85Cell division control protein 2 homolog OS=Homo sa... [more]
CDC2_ORYCU7.734e-7665.85Cell division control protein 2 homolog OS=Oryzias... [more]
CDC2_RANDY1.723e-7567.32Cell division control protein 2 homolog OS=Rana dy... [more]
CDC2_DROME2.250e-7564.88Cell division control protein 2 homolog OS=Drosoph... [more]
CDC2H_PLAYO2.250e-7569.27Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2_CHICK5.013e-7566.34Cell division control protein 2 homolog OS=Gallus ... [more]
CDC2H_PLAFK2.488e-7468.14Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2H_PLAF72.488e-7468.14Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2_AJECA5.543e-7464.89Cell division control protein 2 OS=Ajellomyces cap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA58BH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878298 ID=FC878298; Name=FC878298; organism=Citrus clementina; type=EST; length=837bp
TGCCTCCAATCACCTCACTCTTACTCCGGCGATCTCCCCCGTCGGCTTGG
ATCGTCCTCGCGTCTGTTACTGTATTATGCATTTGTATTTTTCTCTTTCG
TAAGCGGTTAATTTTTTCTTCATAACACACTGCCGCCACCTACGCCGTCG
ATTCGTGCCGTTCTTGTCGCCGTCCGTCGGTAGCAAGGACGCCTCGTTCG
TGTAGCTGTTACATTAAGACTGAATGGACCAGTATGAAAAGGTTGAGAAG
ATTGGTGAAGGAACCTATGGAGTAGTTTACAAGGCCCGTAATTGTGTCAC
GAATGAGACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAG
GTGTGCCTAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAG
CATGGGAACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACT
TTATCTGGTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATT
CTTGCCCAGATTTTGCTAATGATCCTCGTCTGATAAAAACATTCCTTTAT
CAAATTCTACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTTCATCG
AGATTTGAAACCACAAAATTTGCTAATAGATCGTCGTACGAATGCACTAA
AGCTTGCAGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTAGGACA
TTTACACATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACT
AGGATCTCGCCATTACTCTACTCCAGTTGATGTGTGGTCGGTGGGATGTA
TATTTGCTGAGATGGTGAACCAGCGGGCATTGTTTCC
back to top