FC878298

Overview
NameFC878298
Unique NameFC878298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDK5_XENLA (Cell division protein kinase 5 OS=Xenopus laevis GN=cdk5 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 3.593e-73
Identity = 133/205 (64.88%), Postives = 170/205 (82.93%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RALF 835
            M +YEK+EKIGEGTYG V+KA+N  T+E +ALK++RL+ +DEGVPS+A+REI LLKE++H NIVRL DV+HS+KKL LVFE+ D DLKK+ DSC +   DP ++K+F+YQ+L+G+A+CHS  VLHRDLKPQNLLI+ R   LKLADFGLARAFGIPVR ++ EVVTLWYR P++L G++ YST +D+WS GCIFAE+ N  R LF
Sbjct:    1 MQKYEKLEKIGEGTYGTVFKAKNRDTHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSC-NGDLDPEIVKSFMYQLLKGLAFCHSRNVLHRDLKPQNLLIN-RNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF 203          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC2_EMENI (Cell division control protein 2 OS=Emericella nidulans GN=nimX PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 8.003e-73
Identity = 143/224 (63.84%), Postives = 169/224 (75.45%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCV-TNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSE-KKLYLVFEYLDLDLKKHMDSCP------------------DFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            M+ Y+K+EKIGEGTYGVVYKAR     N  +ALKKIRLE EDEGVPSTAIREISLLKEM   NIVRL ++VH++  KLYLVFE+LDLDLKK+M++ P                  +      ++K F+ Q++ GI +CHSHRVLHRDLKPQNLLIDR  N LKLADFGLARAFG+P+RT+THEVVTLWYR+PEILLG R YST VD+WS G IFAEM  ++ LF
Sbjct:    1 MENYQKIEKIGEGTYGVVYKARELTHPNRIVALKKIRLEAEDEGVPSTAIREISLLKEMNDPNIVRLLNIVHADGHKLYLVFEFLDLDLKKYMEALPVSEGGRGRALPDGSTLSRNLGLGDAMVKKFMAQLIEGIRFCHSHRVLHRDLKPQNLLIDRDGN-LKLADFGLARAFGVPLRTYTHEVVTLWYRSPEILLGGRQYSTGVDMWSCGAIFAEMCTRKPLF 223          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC28_YEAST (Cell division control protein 28 OS=Saccharomyces cerevisiae GN=CDC28 PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.045e-72
Identity = 135/206 (65.53%), Postives = 168/206 (81.55%), Query Frame = 2
Query:  233 YEKVEKIGEGTYGVVYKARNCVTNE---TIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK-KLYLVFEYLDLDLKKHMDSCP-DFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            Y+++EK+GEGTYGVVYKA +    +    +ALKKIRLE EDEGVPSTAIREISLLKE++  NIVRL D+VHS+  KLYLVFE+LDLDLK++M+  P D      ++K F+ Q+ +GIAYCHSHR+LHRDLKPQNLLI++  N LKL DFGLARAFG+P+R +THE+VTLWYRAPE+LLG + YST VD WS+GCIFAEM N++ +F
Sbjct:    8 YKRLEKVGEGTYGVVYKALDLRPGQGQRVVALKKIRLESEDEGVPSTAIREISLLKELKDDNIVRLYDIVHSDAHKLYLVFEFLDLDLKRYMEGIPKDQPLGADIVKKFMMQLCKGIAYCHSHRILHRDLKPQNLLINKDGN-LKLGDFGLARAFGVPLRAYTHEIVTLWYRAPEVLLGGKQYSTGVDTWSIGCIFAEMCNRKPIF 212          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDK5_MOUSE (Cell division protein kinase 5 OS=Mus musculus GN=Cdk5 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.365e-72
Identity = 132/205 (64.39%), Postives = 169/205 (82.44%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RALF 835
            M +YEK+EKIGEGTYG V+KA+N  T+E +ALK++RL+ +DEGVPS+A+REI LLKE++H NIVRL DV+HS+KKL LVFE+ D DLKK+ DSC +   DP ++K+FL+Q+L+G+ +CHS  VLHRDLKPQNLLI+ R   LKLADFGLARAFGIPVR ++ EVVTLWYR P++L G++ YST +D+WS GCIFAE+ N  R LF
Sbjct:    1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLIN-RNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF 203          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDK5_HUMAN (Cell division protein kinase 5 OS=Homo sapiens GN=CDK5 PE=1 SV=3)

HSP 1 Score: 273.092 bits (697), Expect = 1.365e-72
Identity = 132/205 (64.39%), Postives = 169/205 (82.44%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RALF 835
            M +YEK+EKIGEGTYG V+KA+N  T+E +ALK++RL+ +DEGVPS+A+REI LLKE++H NIVRL DV+HS+KKL LVFE+ D DLKK+ DSC +   DP ++K+FL+Q+L+G+ +CHS  VLHRDLKPQNLLI+ R   LKLADFGLARAFGIPVR ++ EVVTLWYR P++L G++ YST +D+WS GCIFAE+ N  R LF
Sbjct:    1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLIN-RNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF 203          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDK5_BOVIN (Cell division protein kinase 5 OS=Bos taurus GN=CDK5 PE=1 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 1.365e-72
Identity = 132/205 (64.39%), Postives = 169/205 (82.44%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RALF 835
            M +YEK+EKIGEGTYG V+KA+N  T+E +ALK++RL+ +DEGVPS+A+REI LLKE++H NIVRL DV+HS+KKL LVFE+ D DLKK+ DSC +   DP ++K+FL+Q+L+G+ +CHS  VLHRDLKPQNLLI+ R   LKLADFGLARAFGIPVR ++ EVVTLWYR P++L G++ YST +D+WS GCIFAE+ N  R LF
Sbjct:    1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLIN-RNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF 203          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDK5_RAT (Cell division protein kinase 5 OS=Rattus norvegicus GN=Cdk5 PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.775e-72
Identity = 131/205 (63.90%), Postives = 168/205 (81.95%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQ-RALF 835
            M +YEK+EKIGEGTYG V+KA+N  T+E +ALK++RL+ +DEGVPS+A+REI LLKE++H NIVRL DV+HS+KKL LVFE+ D DLKK+ DSC +   DP ++K+ L+Q+L+G+ +CHS  VLHRDLKPQNLLI+ R   LKLADFGLARAFGIPVR ++ EVVTLWYR P++L G++ YST +D+WS GCIFAE+ N  R LF
Sbjct:    1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSC-NGDLDPEIVKSLLFQLLKGLGFCHSRNVLHRDLKPQNLLIN-RNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF 203          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC2C_DROME (Cell division control protein 2 cognate OS=Drosophila melanogaster GN=cdc2c PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 8.849e-72
Identity = 129/204 (63.24%), Postives = 168/204 (82.35%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            +D +++ EKIGEGTYG+VYKAR+  T + +ALKKIRLE E EGVPSTAIREISLLK ++H N+V+L DVV S   LY++FEYL++DLKK MD   D    P+LIK++++QIL  + +CH++R+LHRDLKPQNLL+D     +KLADFGLARAF +P+R +THEVVTLWYRAPEILLG++ YST VD+WS+GCIF+EM+ +R+LF
Sbjct:    5 LDNFQRAEKIGEGTYGIVYKARSNSTGQDVALKKIRLEGETEGVPSTAIREISLLKNLKHPNVVQLFDVVISGNNLYMIFEYLNMDLKKLMDKKKDVFT-PQLIKSYMHQILDAVGFCHTNRILHRDLKPQNLLVD-TAGKIKLADFGLARAFNVPMRAYTHEVVTLWYRAPEILLGTKFYSTGVDIWSLGCIFSEMIMRRSLF 206          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC21_PEA (Cell division control protein 2 homolog 1 (Fragment) OS=Pisum sativum GN=CDC2 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 7.491e-71
Identity = 133/148 (89.86%), Postives = 139/148 (93.92%), Query Frame = 2
Query:  272 VVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEV 715
            VVYKAR+ VTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQH NIVRLQDVVHSEK+LYLVFEYLDLDLKKHMDS P+F  DPR +K FLYQ+L GIAYCHSHRVLHRDLKPQNLLIDRRTN +KLADFGLARAFGIPVRTFTHEV
Sbjct:    1 VVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFVKDPRQVKMFLYQMLCGIAYCHSHRVLHRDLKPQNLLIDRRTNCVKLADFGLARAFGIPVRTFTHEV 148          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC2_CAEBR (Cell division control protein 2 homolog OS=Caenorhabditis briggsae GN=cdk-1 PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.718e-70
Identity = 126/205 (61.46%), Postives = 162/205 (79.02%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDP-RLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            +D + K+EKIGEGTYGVVYK RN  T   +A+KKIRLE EDEGVPSTA+REISLLKE+QH N+V L+ V+  E +LYL+FE+L  DLK++MD+       P   +K++ +QIL+ + +CH  RV+HRDLKPQNLL+D +  A+KLADFGLARA GIP+R +THEVVTLWYRAPEIL+G++ YS  VD+WS+GCIFAEM  ++ LF
Sbjct:   13 LDDFTKLEKIGEGTYGVVYKGRNRRTQAMVAMKKIRLESEDEGVPSTAVREISLLKELQHPNVVGLEAVIMQENRLYLIFEFLSYDLKRYMDTLSKEEYLPSETLKSYTFQILQAMCFCHQRRVIHRDLKPQNLLVDEK-GAIKLADFGLARAIGIPIRVYTHEVVTLWYRAPEILMGAQRYSMGVDMWSIGCIFAEMATKKPLF 216          
The following BLAST results are available for this feature:
BLAST of FC878298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK5_XENLA3.593e-7364.88Cell division protein kinase 5 OS=Xenopus laevis G... [more]
CDC2_EMENI8.003e-7363.84Cell division control protein 2 OS=Emericella nidu... [more]
CDC28_YEAST1.045e-7265.53Cell division control protein 28 OS=Saccharomyces ... [more]
CDK5_MOUSE1.365e-7264.39Cell division protein kinase 5 OS=Mus musculus GN=... [more]
CDK5_HUMAN1.365e-7264.39Cell division protein kinase 5 OS=Homo sapiens GN=... [more]
CDK5_BOVIN1.365e-7264.39Cell division protein kinase 5 OS=Bos taurus GN=CD... [more]
CDK5_RAT6.775e-7263.90Cell division protein kinase 5 OS=Rattus norvegicu... [more]
CDC2C_DROME8.849e-7263.24Cell division control protein 2 cognate OS=Drosoph... [more]
CDC21_PEA7.491e-7189.86Cell division control protein 2 homolog 1 (Fragmen... [more]
CDC2_CAEBR3.718e-7061.46Cell division control protein 2 homolog OS=Caenorh... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA58BH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878298 ID=FC878298; Name=FC878298; organism=Citrus clementina; type=EST; length=837bp
TGCCTCCAATCACCTCACTCTTACTCCGGCGATCTCCCCCGTCGGCTTGG
ATCGTCCTCGCGTCTGTTACTGTATTATGCATTTGTATTTTTCTCTTTCG
TAAGCGGTTAATTTTTTCTTCATAACACACTGCCGCCACCTACGCCGTCG
ATTCGTGCCGTTCTTGTCGCCGTCCGTCGGTAGCAAGGACGCCTCGTTCG
TGTAGCTGTTACATTAAGACTGAATGGACCAGTATGAAAAGGTTGAGAAG
ATTGGTGAAGGAACCTATGGAGTAGTTTACAAGGCCCGTAATTGTGTCAC
GAATGAGACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAG
GTGTGCCTAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAG
CATGGGAACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACT
TTATCTGGTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATT
CTTGCCCAGATTTTGCTAATGATCCTCGTCTGATAAAAACATTCCTTTAT
CAAATTCTACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTTCATCG
AGATTTGAAACCACAAAATTTGCTAATAGATCGTCGTACGAATGCACTAA
AGCTTGCAGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTAGGACA
TTTACACATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACT
AGGATCTCGCCATTACTCTACTCCAGTTGATGTGTGGTCGGTGGGATGTA
TATTTGCTGAGATGGTGAACCAGCGGGCATTGTTTCC
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