FC878298

Overview
NameFC878298
Unique NameFC878298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDK18_MOUSE (Cell division protein kinase 18 OS=Mus musculus GN=Cdk18 PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.787e-64
Identity = 116/204 (56.86%), Postives = 157/204 (76.96%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            ++ Y K++K+GEGTY  V+K R+ +T   +ALK+IRLE E EG P TAIRE+SLLK+++H NIV L D++H+++ L LVFEYLD DLK+++D C +  N    +K F++Q+LRG+AYCH  ++LHRDLKPQNLLI+ R   LKLADFGLARA  +P +T+++EVVTLWYR P++LLGS  YSTP+D+W VGCI  EM   + LF
Sbjct:  118 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANIVTLHDLIHTDRSLTLVFEYLDSDLKQYLDHCGNLMNMHN-VKIFMFQLLRGLAYCHHRKILHRDLKPQNLLINER-GELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGKPLF 318          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDK16_RAT (Cell division protein kinase 16 OS=Rattus norvegicus GN=Cdk16 PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.787e-64
Identity = 121/204 (59.31%), Postives = 156/204 (76.47%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            ++ Y K++K+GEGTY  VYK ++ +T+  +ALK+IRLE E EG P TAIRE+SLLK+++H NIV L D++H+EK L LVFEYLD DLK+++D C +  N    +K FL+Q+LRG+AYCH  +VLHRDLKPQNLLI+ R   LKLADFGLA A  IP +T+++EVVTLWYR P+ILLGS  YS  +D+W VGCIF EM   R LF
Sbjct:  162 LETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNVINMHN-VKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINER-GELKLADFGLAYAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSGQIDMWGVGCIFYEMATGRPLF 362          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: PHO85_KLULA (Negative regulator of the PHO system OS=Kluyveromyces lactis GN=PHO85 PE=3 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 3.048e-64
Identity = 122/207 (58.94%), Postives = 160/207 (77.29%), Query Frame = 2
Query:  230 QYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPR-----LIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            Q++++EK+G GTY  VYK  N  T   +ALK+++L+ E EG PSTAIREISL+KE++H NIVRL DV+H+E KL LVFE++D DLKK MD+  +  N  +     L+K F +Q+L+G+A+CH +R+LHRDLKPQNLLI+ R   LKL DFGLARAFGIPV TF+ EVVTLWYRAP++L+GSR+Y T +D+WS GCI AEM+  + LF
Sbjct:    6 QFKQLEKVGNGTYATVYKGLNKTTGVYVALKEVKLDSE-EGTPSTAIREISLMKELKHDNIVRLFDVIHTENKLTLVFEFMDNDLKKFMDN-RNKGNSHKGLEMDLVKYFQWQLLQGVAFCHENRILHRDLKPQNLLINNR-GQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRNYCTSIDIWSCGCILAEMIMGKPLF 209          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: PHO85_ASHGO (Negative regulator of the PHO system OS=Ashbya gossypii GN=PHO85 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 3.048e-64
Identity = 123/207 (59.42%), Postives = 160/207 (77.29%), Query Frame = 2
Query:  230 QYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPR-----LIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            +++++E++G GTY  VYK  N  T   +ALK+++L+ E EG PSTAIREISL+KE++H NIVRL DV+H+E KL LVFE++D DLKK MDS  D    PR     L+K F +Q+L+G+A+CH +R+LHRDLKPQNLLI+ +   LKL DFGLARAFGIPV TF+ EVVTLWYRAP++L+GSR Y T +D+WS GCI AEM+  +ALF
Sbjct:    8 RFKQLERLGNGTYATVYKGLNKTTGLYVALKEVKLDSE-EGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEFMDNDLKKFMDSRLD-REMPRGLELSLVKYFQWQLLQGVAFCHENRILHRDLKPQNLLINNK-GQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYCTSIDIWSCGCILAEMIMGKALF 211          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CC2H3_TRYBB (Cell division control protein 2 homolog 3 OS=Trypanosoma brucei brucei GN=CRK3 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.981e-64
Identity = 113/206 (54.85%), Postives = 159/206 (77.18%), Query Frame = 2
Query:  218 D*MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            D  D+Y +++ +GEGTYGVVY+A +  T + +ALKK+RL++ DEG+P TA+RE+S+L+E+ H NIV L DV+ ++ KLYL+FEY+D DLKK ++     A     +K  +YQ+L G+++CH HR++HRDLKP N+L+    N++K+ADFGLARAF IP+ T+THEVVTLWYRAPEILLG +HY+  VD+WS+GCIFAE+   + LF
Sbjct:   18 DQFDRYNRMDILGEGTYGVVYRAVDRATGQIVALKKVRLDRTDEGIPQTALREVSILQEIHHPNIVNLLDVICADGKLYLIFEYVDHDLKKALEK-RGGAFTGTTLKKIIYQLLEGLSFCHRHRIVHRDLKPANILV-TTDNSVKIADFGLARAFQIPMHTYTHEVVTLWYRAPEILLGEKHYTPAVDMWSIGCIFAELARGKVLF 221          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CKB11_ARATH (Cyclin-dependent kinase B1-1 OS=Arabidopsis thaliana GN=CDKB1-1 PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 5.200e-64
Identity = 124/219 (56.62%), Postives = 161/219 (73.52%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHG-NIVRLQDVVH----------SEKKLYLVFEYLDLDLKKHMDSCPDFAN----DPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            M++YEK+EK+GEGTYG VYKA    T + +ALKK RLE ++EG+P TA+REISLL+ +     +VRL  V H          ++  LYLVFEYLD DLKK +DS     N    +P LI+  ++Q+ +G+A+CHSH VLHRDLKPQNLL+ +    LK+AD GL RAF +P++++THE+VTLWYRAPE+LLGS HYST VD+WSVGCIFAEMV ++ALF
Sbjct:    1 MEKYEKLEKVGEGTYGKVYKAMEKGTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSTSIYVVRLLCVEHVHQPSTKSQSTKSNLYLVFEYLDTDLKKFIDSYRKGPNPKPLEPFLIQKLMFQLCKGVAHCHSHGVLHRDLKPQNLLLVKDKELLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALF 219          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDK18_PONAB (Cell division protein kinase 18 OS=Pongo abelii GN=CDK18 PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 6.791e-64
Identity = 116/204 (56.86%), Postives = 156/204 (76.47%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            ++ Y K++K+GEGTY  V+K R+ +T   +ALK+IRLE E EG P TAIRE+SLLK ++H NIV L D++H+++ L LVFEYLD DLK+++D C +  +    +K F++Q+LRG+AYCH  ++LHRDLKPQNLLI+ R   LKLADFGLARA  +P +T+++EVVTLWYR P++LLGS  YSTP+D+W VGCI  EM   R LF
Sbjct:  139 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKNLKHANIVTLHDLIHTDRSLTLVFEYLDSDLKQYLDHCGNLMSMHN-VKIFMFQLLRGLAYCHHRKILHRDLKPQNLLINER-GELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCIHYEMATGRPLF 339          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDK18_HUMAN (Cell division protein kinase 18 OS=Homo sapiens GN=CDK18 PE=1 SV=3)

HSP 1 Score: 244.202 bits (622), Expect = 6.791e-64
Identity = 116/204 (56.86%), Postives = 156/204 (76.47%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            ++ Y K++K+GEGTY  V+K R+ +T   +ALK+IRLE E EG P TAIRE+SLLK ++H NIV L D++H+++ L LVFEYLD DLK+++D C +  +    +K F++Q+LRG+AYCH  ++LHRDLKPQNLLI+ R   LKLADFGLARA  +P +T+++EVVTLWYR P++LLGS  YSTP+D+W VGCI  EM   R LF
Sbjct:  139 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHE-EGAPCTAIREVSLLKNLKHANIVTLHDLIHTDRSLTLVFEYLDSDLKQYLDHCGNLMSMHN-VKIFMFQLLRGLAYCHHRKILHRDLKPQNLLINER-GELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCIHYEMATGRPLF 339          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CKB21_ORYSJ (Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp. japonica GN=CDKB2-1 PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.869e-64
Identity = 118/212 (55.66%), Postives = 157/212 (74.06%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEM-QHGNIVRLQDVVHSEKK-----LYLVFEYLDLDLKKHMDSCPDFANDPRL--IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            MD YEK+EK+GEGTYG VYKAR   T   +ALKK RL ++DEGVP TA+RE+SLL+ + Q  ++VRL D+   + K     LYLVFEY+D DLKK + +         +  +K  +YQ+ +G+A+CH   VLHRDLKP NLL+DR+T ALK+AD GL+R+F +P++ +THE++TLWYRAPE+LLG+ HYSTPVD+WSVGCIFAE+   + LF
Sbjct:   25 MDLYEKLEKVGEGTYGKVYKAREKATGRIVALKKTRLPEDDEGVPPTALREVSLLRMLSQDSHVVRLLDLKQGQNKEGQTILYLVFEYMDTDLKKFIRAHRQNLQKIPVPTVKILMYQLCKGVAFCHGRGVLHRDLKPHNLLMDRKTMALKIADLGLSRSFTVPLKKYTHEILTLWYRAPEVLLGAAHYSTPVDIWSVGCIFAELATNQPLF 236          
BLAST of FC878298 vs. ExPASy Swiss-Prot
Match: CDC2C_ANTMA (Cell division control protein 2 homolog C OS=Antirrhinum majus GN=CDC2C PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.402e-63
Identity = 123/215 (57.21%), Postives = 161/215 (74.88%), Query Frame = 2
Query:  224 MDQYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHG-NIVRLQDVVH------SEKKLYLVFEYLDLDLKKHMDSCPDFAND----PRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRALF 835
            M++YEK+EK+GEGTYG VYKA    T + +ALKK RLE ++EGVP TA+RE+SLL+ +     +VRL  V H       +  LYLVFEYLD DLKK +DS     N     P+ I++FL+Q+ +G+++CH+H VLHRDLKPQNLL+D+    LK+AD GLARAF +P++++THE+VTL YRAPE+LLGS HYST VD+ SVGCIFAEMV ++ALF
Sbjct:    1 MEKYEKLEKVGEGTYGKVYKALEKSTGQVVALKKTRLEMDEEGVPPTALREVSLLQMLSQSLYVVRLLSVEHVDCAKNGKPLLYLVFEYLDTDLKKFIDSHRKGPNPRPLPPQQIQSFLFQLCKGVSHCHAHGVLHRDLKPQNLLLDKDKGVLKIADLGLARAFTVPLKSYTHEIVTLSYRAPEVLLGSSHYSTAVDMSSVGCIFAEMVRRQALF 215          
The following BLAST results are available for this feature:
BLAST of FC878298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK18_MOUSE1.787e-6456.86Cell division protein kinase 18 OS=Mus musculus GN... [more]
CDK16_RAT1.787e-6459.31Cell division protein kinase 16 OS=Rattus norvegic... [more]
PHO85_KLULA3.048e-6458.94Negative regulator of the PHO system OS=Kluyveromy... [more]
PHO85_ASHGO3.048e-6459.42Negative regulator of the PHO system OS=Ashbya gos... [more]
CC2H3_TRYBB3.981e-6454.85Cell division control protein 2 homolog 3 OS=Trypa... [more]
CKB11_ARATH5.200e-6456.62Cyclin-dependent kinase B1-1 OS=Arabidopsis thalia... [more]
CDK18_PONAB6.791e-6456.86Cell division protein kinase 18 OS=Pongo abelii GN... [more]
CDK18_HUMAN6.791e-6456.86Cell division protein kinase 18 OS=Homo sapiens GN... [more]
CKB21_ORYSJ8.869e-6455.66Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp... [more]
CDC2C_ANTMA4.402e-6357.21Cell division control protein 2 homolog C OS=Antir... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA58BH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878298 ID=FC878298; Name=FC878298; organism=Citrus clementina; type=EST; length=837bp
TGCCTCCAATCACCTCACTCTTACTCCGGCGATCTCCCCCGTCGGCTTGG
ATCGTCCTCGCGTCTGTTACTGTATTATGCATTTGTATTTTTCTCTTTCG
TAAGCGGTTAATTTTTTCTTCATAACACACTGCCGCCACCTACGCCGTCG
ATTCGTGCCGTTCTTGTCGCCGTCCGTCGGTAGCAAGGACGCCTCGTTCG
TGTAGCTGTTACATTAAGACTGAATGGACCAGTATGAAAAGGTTGAGAAG
ATTGGTGAAGGAACCTATGGAGTAGTTTACAAGGCCCGTAATTGTGTCAC
GAATGAGACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAG
GTGTGCCTAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAG
CATGGGAACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACT
TTATCTGGTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATT
CTTGCCCAGATTTTGCTAATGATCCTCGTCTGATAAAAACATTCCTTTAT
CAAATTCTACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTTCATCG
AGATTTGAAACCACAAAATTTGCTAATAGATCGTCGTACGAATGCACTAA
AGCTTGCAGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTAGGACA
TTTACACATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACT
AGGATCTCGCCATTACTCTACTCCAGTTGATGTGTGGTCGGTGGGATGTA
TATTTGCTGAGATGGTGAACCAGCGGGCATTGTTTCC
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