FC878299

Overview
NameFC878299
Unique NameFC878299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length867
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7104 contig Ccv1_Contig7104:5..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.518e-49
Identity = 91/209 (43.54%), Postives = 134/209 (64.11%), Query Frame = 1
Query:  235 AEAGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCG--SIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKE 855
            + A  P  + N+++AQY+ EI +G P Q F VV DTGSSNLW+PS  C    IAC L               G++FAI+YGSG++ GY+SQD+  IGDI ++ QLFGEA ++PG+AF   +FDGILG+ Y  ISV+ +PP F  M+ Q  +++ VF+FYL+   D E   E + GG +  +YTG+   +P+ R+AYW++ +D ++ G +
Sbjct:   60 SNAPTPETLKNYMDAQYYGEIGLGTPVQMFTVVFDTGSSNLWLPSIHCSFTDIACLLHHKYNGAKSSTYVKNGTEFAIQYGSGSLSGYLSQDSCTIGDIVVEKQLFGEAIKQPGVAFIAAKFDGILGMAYPRISVDGVPPVFDMMMSQKKVEQNVFSFYLNRNPDTEPGGELLLGGTDPKYYTGDFNYVPVTRQAYWQIHMDGMSIGSQ 268          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.227e-48
Identity = 88/205 (42.93%), Postives = 131/205 (63.90%), Query Frame = 1
Query:  253 VAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKESAEF 867
            VA+ N+L+AQY+ EIAIG PPQ+F V+ DTGSSNLW+      S+AC+                G+  +IRYG+GAV G+ S D V++GD+ +K Q+F EAT+EP L F   +FDG+LGLG+  I+V    P +Y+M++Q L+ EPVF+F+L+   ++E   E +FGG++  HY G+ T +P+ +K YW+ D+  +    E   F
Sbjct:   80 VALKNYLDAQYYGEIAIGTPPQKFTVIFDTGSSNLWVLCECLFSVACHFHARYKSSRSSSYKKNGTSASIRYGTGAVSGFFSYDNVKVGDLVVKEQVFIEATREPSLTFLVAKFDGLLGLGFQEIAVGNAVPVWYNMVEQGLVKEPVFSFWLNRNVEEEEGGEIVFGGVDPKHYRGKHTYVPVTQKGYWQFDMGDVLIDGEPTGF 284          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.521e-48
Identity = 93/207 (44.93%), Postives = 129/207 (62.32%), Query Frame = 1
Query:  250 PVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCG-SIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKESAEF 867
            PV + ++LN QY+  I +G+PPQ F V+ DTGSSNLW+PS+ C  SIACYL               G    I YGSGA+ G+ S+D V +GD+ +KNQ F EAT+E  + F  G+FDGILGLGY  ISV K PP + SM +Q+LL + VF+F+L+   D  +  E +FGG++  HY G+ T +P+ RK YW+ ++  +     S  F
Sbjct:   66 PVPLVDYLNTQYYGVIGLGSPPQNFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYNSKKSSSYKADGETCKITYGSGAISGFFSKDNVLVGDLVVKNQKFIEATRETSVTFIIGKFDGILGLGYPEISVGKAPPIWQSMQEQELLADDVFSFWLNRDPDASSGGELVFGGMDPKHYKGDHTYVPVSRKGYWQFNMGDLLIDGHSTGF 272          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.606e-47
Identity = 91/209 (43.54%), Postives = 133/209 (63.64%), Query Frame = 1
Query:  235 AEAGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCG--SIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKE 855
            + A  P  + N+L+AQY+ EI +G PPQ F VV DTGSSNLW+PS  C    IAC L               G+ FAI+YGSG++ GY+SQDT  IGD+ I +QLFGEA ++PG+AF   +FDGILG+ Y  ISV+ + P F +++ Q  +++ VF+FYL+   D E   E + GG +  +YTG+   + + R+AYW++ +D++  G +
Sbjct:   60 SNAPTPETLKNYLDAQYYGEIGLGTPPQPFTVVFDTGSSNLWVPSIHCSLLDIACLLHHKYNSGKSSTYVKNGTAFAIQYGSGSLSGYLSQDTCTIGDLAIDSQLFGEAIKQPGVAFIAAKFDGILGMAYPRISVDGVAPVFDNIMSQKKVEQNVFSFYLNRNPDTEPGGELLLGGTDPKYYTGDFNYVNVTRQAYWQIRVDSMAVGDQ 268          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.098e-47
Identity = 86/199 (43.22%), Postives = 134/199 (67.34%), Query Frame = 1
Query:  250 PVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCG--SIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAI 840
            P  + N+++AQY+ EI IG PPQ+F VV DTGSSNLW+PS  C    IAC L               G++FAI YG+G++ G++SQDTV +G++KIKNQ+FGEA ++PG+ F   +FDGILG+ +  ISV+K+ P F +++ Q L+++ +F+FYL+     +   E + GG +  +Y+G+ + + + RKAYW+V +D++
Sbjct:   67 PEILKNYMDAQYYGEIGIGTPPQKFTVVFDTGSSNLWVPSVHCHLLDIACLLHHKYDASKSSTYVENGTEFAIHYGTGSLSGFLSQDTVTLGNLKIKNQIFGEAVKQPGITFIAAKFDGILGMAFPRISVDKVTPFFDNVMQQKLIEKNIFSFYLNRDPTAQPGGELLLGGTDPKYYSGDFSWVNVTRKAYWQVHMDSV 265          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.972e-47
Identity = 93/207 (44.93%), Postives = 132/207 (63.77%), Query Frame = 1
Query:  259 VSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCG--SIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQI------GDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKE 855
            + N+L+AQY+ EI IG PPQ F VV DTGSSNLW+PS  C    IAC++               G+ F I YGSG++ GY+SQDTV +      G IK++ Q+FGEAT++PG+ F   +FDGILG+GY  ISVNK+ P F +++ Q L+++ +F+FYL+     +   E + GG +  +Y GEL+ L + RKAYW+V +D +  G E
Sbjct:   71 LKNYLDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDLGGIKVEKQIFGEATKQPGVVFIAAKFDGILGMGYPFISVNKVLPVFDNLMKQKLVEKNIFSFYLNRDPTGQPGGELMLGGTDSRYYHGELSYLNVTRKAYWQVHMDQLEVGSE 277          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.320e-46
Identity = 91/210 (43.33%), Postives = 129/210 (61.43%), Query Frame = 1
Query:  250 PVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCG--SIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQI-----------GDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAI 840
            P  + N+++AQY+ EI IG PPQ F VV DTGSSNLW+PS  C    IAC++               G+ F I YGSG++ GY+SQDTV +           G +K++ Q+FGEAT++PG+ F   +FDGILG+ Y  ISVN + P F +++ Q L+D+ +F+FYLS   D +   E + GG +  +Y G L+ L + RKAYW+V LD +
Sbjct:   68 PEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCQSASSASALGGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQV 277          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.167e-46
Identity = 91/210 (43.33%), Postives = 131/210 (62.38%), Query Frame = 1
Query:  259 VSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCG--SIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIG---------DIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKE 855
            + N+L+AQY+ +I IG PPQ F VV DTGSSNLW+PS  C    IAC++               G+ F I YGSG++ GY+SQDTV +           IK++ Q+FGEAT++PG+ F   +FDGILG+GY  ISVN + P F +++ Q L+D+ +F+FYL+   + +   E + GG +  +Y GEL+ L + RKAYW+V +D +  G E
Sbjct:   71 LKNYLDAQYYGDIGIGTPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDQSKARGIKVEKQIFGEATKQPGIVFVAAKFDGILGMGYPHISVNNVLPVFDNLMQQKLVDKNIFSFYLNRDPEGQPGGELMLGGTDSKYYHGELSYLNVTRKAYWQVHMDQLEVGNE 280          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PEPA1_RABIT (Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.703e-44
Identity = 96/258 (37.21%), Postives = 142/258 (55.04%), Query Frame = 1
Query:   85 VHKMKLKKVPLSEQLEGANIGEHMQALGQKYMGVRPQKHADEMFKETSMHAEAGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKES 858
            V K  L+K  + + L    +  H   L  KY          E F   S  +       + N+L+A+YF  I+IG PPQEF V+ DTGSSNLW+PS+ C S+AC+L                   +I YG+G++ G +  DTV++G+I+  NQ+FG +  EPG+ F    FDGILGL Y SIS +   P F +M ++ L+ E +F+ YLS   +K   S  +FGGI+  +YTG L  +P+  + YW++ +D+IT   E+
Sbjct:   23 VRKKSLRKNLIEKGLLQDYLKTHTPNLATKYF-------PKETFASVSTES-------LENYLDAEYFGTISIGTPPQEFTVIFDTGSSNLWVPSTYCSSLACFLHKRFNPDDSSTFQATSETLSITYGTGSMTGILGYDTVKVGNIEDTNQIFGLSKTEPGITFLVAPFDGILGLAYPSISASDATPVFDNMWNEGLVSEDLFSVYLSSNGEK--GSMVMFGGIDSSYYTGSLNWVPVSHEGYWQITMDSITINGET 264          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.837e-44
Identity = 87/201 (43.28%), Postives = 123/201 (61.19%), Query Frame = 1
Query:  253 VAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCG--SIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFG 849
            V +SN+ + QYF EI +G PPQ F V  DTGSSNLW+PS  C   S+ C+L               G+ FAI+YG+G V+G +S+D + IG IK  + +FGEA  EP L FAF  FDGILGLG+  +SV  + PP   +++Q LLD+PVF+FYL+   ++    E + GG +  HY   LT +P+   AYW++ ++ +  G
Sbjct:   68 VPLSNYRDVQYFGEIGLGTPPQNFTVAFDTGSSNLWVPSRRCHFFSVPCWLHHRFDPKASSSFQANGTKFAIQYGTGRVDGILSEDKLTIGGIKGASVIFGEALWEPSLVFAFAHFDGILGLGFPILSVEGVRPPMDVLVEQGLLDKPVFSFYLNRDPEEPDGGELVLGGSDPAHYIPPLTFVPVTVPAYWQIHMERVKVG 268          
The following BLAST results are available for this feature:
BLAST of FC878299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
CATD_CLUHA8.518e-4943.54Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
ASPR_CUCPE4.227e-4842.93Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPRX_ORYSJ5.521e-4844.93Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
CATD_CHIHA1.606e-4743.54Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
CATD_CHICK2.098e-4743.22Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
CATD_RAT7.972e-4744.93Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_HUMAN2.320e-4643.33Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
CATD_MOUSE5.167e-4643.33Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
PEPA1_RABIT3.703e-4437.21Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1[more]
NAPSA_HUMAN4.837e-4443.28Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA12AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878299 ID=FC878299; Name=FC878299; organism=Citrus clementina; type=EST; length=867bp
ACACATCCCCCACACAGAAACAACAAGATGAAGGGCAGTTCTCTCATGGC
AGCCGGTGCGCTGTTTGGCTCGGCTTCGGCTGGTGTCCACAAGATGAAGC
TCAAGAAGGTTCCTCTCTCGGAGCAGCTTGAGGGCGCAAACATTGGCGAG
CACATGCAGGCTCTCGGCCAGAAGTACATGGGTGTTCGCCCCCAGAAGCA
CGCCGACGAGATGTTCAAGGAGACCTCCATGCACGCTGAGGCCGGCCACC
CCGTCGCTGTCAGCAACTTTCTGAACGCTCAGTACTTCTCCGAGATTGCC
ATCGGCAACCCTCCCCAGGAGTTCAAGGTCGTCCTCGACACTGGTAGCTC
CAACCTGTGGATCCCCTCGTCTGACTGTGGTTCCATCGCTTGCTATCTCC
ACAACAAGTACGACCACAGCGACTCTTCGTCGTACAAGAAGAACGGCTCC
GACTTTGCCATCCGCTACGGCTCGGGTGCTGTTGAGGGTTACATCTCTCA
GGACACTGTCCAGATTGGTGACATCAAGATCAAGAACCAGCTCTTCGGTG
AGGCCACTCAGGAGCCTGGCTTGGCTTTCGCCTTTGGCCGCTTCGACGGT
ATCCTCGGTCTTGGATACGACTCCATCAGTGTCAACAAGATCCCCCCTCC
TTTCTACTCAATGATTGACCAGGACCTGCTCGACGAGCCTGTCTTCGCCT
TCTACCTCAGCGACACCAACGACAAGGAGGCTGAGTCCGAGGCCATCTTC
GGTGGTATCAACAAGGACCACTACACCGGCGAGCTCACCAAGCTCCCTCT
GAGACGCAAGGCCTACTGGGAGGTTGACCTTGACGCCATCACCTTCGGCA
AGGAGAGTGCCGAGTTC
back to top