FC878299

Overview
NameFC878299
Unique NameFC878299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length867
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7104 contig Ccv1_Contig7104:5..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CTSD_NANOT (Probable aspartic-type endopeptidase CTSD (Fragment) OS=Nannizzia otae (strain CBS 113480) GN=CTSD PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11
Identity = 48/171 (28.07%), Postives = 74/171 (43.27%), Query Frame = 1
Query:  331 VLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAY-WEVDLDAI 840
            ++DTG+S  W+  SDC S +C                    + + YG+G V G I  DT+     ++    FG AT      F     DGILG+G    S  K+P     ++ Q LL   +    L   +D   + +  FG ++K  ++GEL    +    Y WE+ +D I
Sbjct:    2 LIDTGASRTWVFGSDCTSKSCGAHNTFGKEDSKTIKVTDEKWDVAYGTGKVAGVIVNDTMSFAGFELDTP-FGSATTASD-DFMSYPMDGILGIGPQD-SKAKVPTVIQLLMQQKLLKSNIIGINLQRNSDGATDGQITFGDVDKSKFSGELAYSNVVSGGYQWEIAVDDI 169          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CARP8_CANAL (Candidapepsin-8 OS=Candida albicans GN=SAP8 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 53/200 (26.50%), Postives = 88/200 (44.00%), Query Frame = 1
Query:  283 YFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDC---------GSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSG-AVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGY----DSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAI 840
            Y + I +G+  Q+  V++DTGSS+LW+  S               C                 G  F+IRY  G + +G + +DT+ +G   I NQ F + T             GILG+G+     S + + +P    ++  Q ++++  ++ YL+  +   +    IFGG++   YTG LT LP+       V L  I
Sbjct:   89 YAATITVGSNKQQQTVIVDTGSSDLWVVDSAAVCQVTYPGQSPTFCKQDGTYKPSSSTTSQNLGKAFSIRYEDGSSSQGTVYKDTIGLGGASITNQQFADVT-------TTSVDQGILGIGFTGDESSPTYDNVP---VTLKKQGIINKNAYSLYLNSAS--ASSGTIIFGGVDNAKYTGSLTALPITSSNELRVQLSTI 276          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CARP_IRPLA (Polyporopepsin OS=Irpex lacteus PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11
Identity = 52/206 (25.24%), Postives = 88/206 (42.72%), Query Frame = 1
Query:  283 YFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISV--------NKIPPPFYSMIDQDLLDEPVFAF-YLSDTNDKEAESEAIFGGINKDHYTGELTKLPLR----RKAYWEVDLDAITFGKESA 861
            Y   + +G+P   + +++DTGSSN W+     G+   Y+                   ++ YGSG+  G    DTV +G + I  Q  G A+++ G    F   DGILG+G   ++V          IP    ++  Q  +   + A  +   T++     E  FG  +   YTG +T  P+       AYW ++   I +G  ++
Sbjct:   14 YVVNVGVGSPATTYSLLVDTGSSNTWL-----GADKSYV-------KTSTSSATSDKVSVTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSG----FDGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QTIRYGSSTS 202          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CARP_PODAN (Podosporapepsin OS=Podospora anserina GN=PAPA PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 61/229 (26.64%), Postives = 98/229 (42.79%), Query Frame = 1
Query:  199 HADEMFKET--SMHAEAGHPVAVS-NFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWI-----PSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGA-VEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMID--QDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRK-AYWEVDLDAITFG 849
            H DE  +E    +  + G   A+  N ++  Y + + IG PPQ   + LDTGSS+LW+     PS+       Y                G  ++IRYG G+   G +  D   IG +++K+Q    A +   +       DG++GLG+ +++  + P    +  D  +  LDE VF   L       A     FG I+   Y G +T   +++   YW   L   + G
Sbjct:   77 HIDEEQEEAFARIKRDTGSAAAIPINEVDIAYVTPVTIGTPPQTLMLDLDTGSSDLWVFSSLTPSNQVRGQEIY----SPTKSSTSKLLSGHTWSIRYGDGSGSRGTVYTDNFTIGGLEVKSQAVQAALEVSSMLTQEQSLDGLVGLGFSALNTVR-PSSQLTFFDNARPNLDEEVFTADLK----YHATGSYDFGFIDSKKYAGNITYTAVQQSPGYWTHSLSGYSVG 296          
The following BLAST results are available for this feature:
BLAST of FC878299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
CTSD_NANOT2.423e-1128.07Probable aspartic-type endopeptidase CTSD (Fragmen... [more]
CARP8_CANAL3.164e-1126.50Candidapepsin-8 OS=Candida albicans GN=SAP8 PE=3 S... [more]
CARP_IRPLA4.133e-1125.24Polyporopepsin OS=Irpex lacteus PE=1 SV=1[more]
CARP_PODAN9.206e-1126.64Podosporapepsin OS=Podospora anserina GN=PAPA PE=2... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA12AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878299 ID=FC878299; Name=FC878299; organism=Citrus clementina; type=EST; length=867bp
ACACATCCCCCACACAGAAACAACAAGATGAAGGGCAGTTCTCTCATGGC
AGCCGGTGCGCTGTTTGGCTCGGCTTCGGCTGGTGTCCACAAGATGAAGC
TCAAGAAGGTTCCTCTCTCGGAGCAGCTTGAGGGCGCAAACATTGGCGAG
CACATGCAGGCTCTCGGCCAGAAGTACATGGGTGTTCGCCCCCAGAAGCA
CGCCGACGAGATGTTCAAGGAGACCTCCATGCACGCTGAGGCCGGCCACC
CCGTCGCTGTCAGCAACTTTCTGAACGCTCAGTACTTCTCCGAGATTGCC
ATCGGCAACCCTCCCCAGGAGTTCAAGGTCGTCCTCGACACTGGTAGCTC
CAACCTGTGGATCCCCTCGTCTGACTGTGGTTCCATCGCTTGCTATCTCC
ACAACAAGTACGACCACAGCGACTCTTCGTCGTACAAGAAGAACGGCTCC
GACTTTGCCATCCGCTACGGCTCGGGTGCTGTTGAGGGTTACATCTCTCA
GGACACTGTCCAGATTGGTGACATCAAGATCAAGAACCAGCTCTTCGGTG
AGGCCACTCAGGAGCCTGGCTTGGCTTTCGCCTTTGGCCGCTTCGACGGT
ATCCTCGGTCTTGGATACGACTCCATCAGTGTCAACAAGATCCCCCCTCC
TTTCTACTCAATGATTGACCAGGACCTGCTCGACGAGCCTGTCTTCGCCT
TCTACCTCAGCGACACCAACGACAAGGAGGCTGAGTCCGAGGCCATCTTC
GGTGGTATCAACAAGGACCACTACACCGGCGAGCTCACCAAGCTCCCTCT
GAGACGCAAGGCCTACTGGGAGGTTGACCTTGACGCCATCACCTTCGGCA
AGGAGAGTGCCGAGTTC
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