FC878299

Overview
NameFC878299
Unique NameFC878299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length867
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7104 contig Ccv1_Contig7104:5..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.837e-44
Identity = 90/212 (42.45%), Postives = 128/212 (60.38%), Query Frame = 1
Query:  250 PVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCG--SIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYIS-QDTVQI---------GDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFG 849
            P  + N+++AQY+ EI IG PPQ F VV DTGSSNLW+PS  C    IAC++               G+ FAI YGSG++ GY+S QDTV +         G IK++ Q FGEAT++PGL F   +FDGILG+ Y  ISVN + P F +++ Q L+D+ +F+FYL+     +   E + GGI+  +Y G L    + RKAYW++ ++ +  G
Sbjct:    4 PEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSGKSSTYVKNGTTFAIHYGSGSLSGYLSSQDTVSVPCNSALSGVGGIKVERQTFGEATKQPGLTFIAAKFDGILGMAYPRISVNNVVPVFDNLMQQKLVDKDIFSFYLNRDPGAQPGGELMLGGIDSKYYKGSLDYHNVTRKAYWQIHMNQVAVG 215          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.077e-43
Identity = 89/226 (39.38%), Postives = 132/226 (58.41%), Query Frame = 1
Query:  184 VRPQKHADEMFKETSMHAEAGHP--VAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCG--SIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFG 849
            + P    +++ + +      G+P  V +S F+N QYF  I +G PPQ F VV DTGSSNLW+PS+ C   S+AC+                G+ FAI+YG+G + G +SQD + IG I      FGEA  EP L FA   FDGILGLG+ +++V  + PP  +M++Q LL++PVF+FYL+  ++     E + GG +  HY   LT +P+   AYW+V ++++  G
Sbjct:   38 LNPLNGWEQLAELSRTSTSGGNPSFVPLSKFMNTQYFGTIGLGTPPQNFTVVFDTGSSNLWVPSTRCHFFSLACWFHHRFNPKASSSFRPNGTKFAIQYGTGRLSGILSQDNLTIGGIHDAFVTFGEALWEPSLIFALAHFDGILGLGFPTLAVGGVQPPLDAMVEQGLLEKPVFSFYLNRDSEGSDGGELVLGGSDPAHYVPPLTFIPVTIPAYWQVHMESVKVG 263          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.077e-43
Identity = 87/211 (41.23%), Postives = 128/211 (60.66%), Query Frame = 1
Query:  250 PVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCG--SIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQI---------GDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFG 849
            P  + N+++AQY+ EI IG PPQ F VV DTGSSNLW+PS  C    IAC++               G+ F I YGSG++ GY+SQDTV +           IK++ Q FGEAT++PG+ F   +FDGILG+ Y  ISVN + P F +++ Q L+++ +F+FYL+   + +   E + GG +  +Y G L+ L + RKAYW+V ++ +  G
Sbjct:   68 PEMLRNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSGKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSALSGLAGIKVERQTFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVEKNIFSFYLNRDPNAQPGGELMLGGTDSKYYKGPLSYLNVTRKAYWQVHMEQVDVG 278          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PEPA4_RABIT (Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.984e-43
Identity = 83/201 (41.29%), Postives = 126/201 (62.69%), Query Frame = 1
Query:  256 AVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKES 858
            ++ N+L+A+YF  I+IG PPQ+F V+ DTGSSNLW+PS+ C S+AC L                   +I YG+G++ G +  DTV++G I+  NQ+FG +  EPGL F F  FDGILGL Y SIS +   P F +M ++ L+ + +F+ YLS  +D E  S  +FGGI+  +YTG L  +P+  + YW++ +D+++   E+
Sbjct:   66 SLENYLDAEYFGTISIGTPPQDFTVIFDTGSSNLWVPSTYCSSLACALHKRFNPEDSSTYQGTSETLSITYGTGSMTGILGYDTVKVGSIEDTNQIFGLSKTEPGLTFLFAPFDGILGLAYPSISSSDATPVFDNMWNEGLVSQDLFSVYLS--SDDEKGSLVMFGGIDSSYYTGSLNWVPVSYEGYWQITMDSVSINGET 264          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PEPA2_RABIT (Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.466e-42
Identity = 82/201 (40.80%), Postives = 125/201 (62.19%), Query Frame = 1
Query:  256 AVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKES 858
            ++ N+L+A+YF  I+IG PPQ+F V+ DTGSSNLW+PS+ C S+AC L                   +I YG+G++ G +  DTV++G I+  NQ+FG +  EP L F F  FDGILGL Y SIS +   P F +M ++ L+ + +F+ YLS  +D E  S  +FGGI+  +YTG L  +P+  + YW++ +D+++   E+
Sbjct:   66 SMENYLDAEYFGTISIGTPPQDFTVIFDTGSSNLWVPSTYCSSLACALHKRFNPEDSSTYQGTSETLSITYGTGSMTGILGYDTVKVGSIEDTNQIFGLSKTEPSLTFLFAPFDGILGLAYPSISSSDATPVFDNMWNEGLVSQDLFSVYLS--SDDEKGSLVMFGGIDSSYYTGSLNWVPVSYEGYWQITMDSVSINGET 264          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 5.912e-42
Identity = 88/213 (41.31%), Postives = 125/213 (58.69%), Query Frame = 1
Query:  226 SMHAEAGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTV-----QIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFG 849
            SM   A  P+   N+L+ +YF  I+IG+PPQ F V+ DTGSSNLW+PS  C S AC                 G  F+I+YG+G++ G I  D V     Q+  + +  Q FGE+  EPG  F    FDGILGLGY S++V  + P F +M+ Q+L+D P+F+ Y+S   +  A SE IFGG +  H++G L  +P+ ++AYW++ LD I  G
Sbjct:   61 SMDQSAKEPLI--NYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGSLSGIIGADQVSAFATQVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVG 271          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATE_CAVPO (Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.317e-41
Identity = 94/257 (36.58%), Postives = 145/257 (56.42%), Query Frame = 1
Query:  100 LKKVPLSEQLEGANIGEHMQALGQKYMGVRPQKHADEMFKETSMHAE-------AGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFG 849
            L +VPLS +          ++L +K   +R Q    E++K  +++ +       A  P+   N+L+ +YF  I+IG+PPQ F V+ DTGSSNLW+PS  C S AC                 G+ F+I+YG+G++ G I  D V +  + +  Q FGE+ QEPG  F    FDGILGLGY S++   + P F +M+ Q+L+  P+F+ Y+S +N   + SE  FGG +  H++G L  +P+ ++AYW++ LD I  G
Sbjct:   21 LHRVPLSRR----------ESLRKK---LRAQGQLTELWKSQNLNMDQCSTIQSANEPLI--NYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACQTHPVFHPSLSSTYREVGNSFSIQYGTGSLTGIIGADQVSVEGLTVVGQQFGESVQEPGKTFVHAEFDGILGLGYPSLAAGGVTPVFDNMMAQNLVALPMFSVYMS-SNPGGSGSELTFGGYDPSHFSGSLNWVPVTKQAYWQIALDGIQVG 261          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATEB_XENLA (Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.317e-41
Identity = 81/197 (41.12%), Postives = 119/197 (60.41%), Query Frame = 1
Query:  265 NFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKE 855
            N+++ QYF EI+IG PPQ F V+ DTGSSNLW+PS  C S AC                 G++F+++YG+G++ G I  D+V +  I ++NQ FGE+  EPG  F    FDGILGLGY SI+V    P F +MI Q+L++ P+F+ Y+S   +     E +FGG +   ++G+L  +P+  + YW++ LD I    E
Sbjct:   68 NYMDVQYFGEISIGTPPQNFTVIFDTGSSNLWVPSVYCISPACAQHNRFQPQLSSTYESNGNNFSLQYGTGSLSGVIGIDSVTVEGILVQNQQFGESVSEPGSTFVDASFDGILGLGYPSIAVGGCTPVFDNMIAQNLVELPMFSVYMSRDPNSPVGGELVFGGFDASRFSGQLNWVPVTNQGYWQIQLDNIQINGE 264          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.317e-41
Identity = 84/211 (39.81%), Postives = 126/211 (59.72%), Query Frame = 1
Query:  250 PVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCG--SIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQI---------GDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFG 849
            P  ++N+++AQY+ EI IG PPQ F VV DTGS+NLW+PS  C    IAC++               G+ F I YGSG++ GY+SQDTV +         G + ++ Q FGEA ++PG+ F   +FDGILG+ Y  ISVN + P F +++ Q L+D+ VF+F+L+     +   E + GG +  +Y G LT   + R+AYW++ +D +  G
Sbjct:   43 PELLTNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTTFDIHYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAKFDGILGMAYPRISVNNVLPVFDNLMRQKLVDKNVFSFFLNRDPKAQPGEELMLGGTDSKYYRGSLTYHNVTRQAYWQIHMDQLDVG 253          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PAG2_PIG (Pregnancy-associated glycoprotein 2 OS=Sus scrofa GN=PAG2 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.247e-41
Identity = 88/229 (38.43%), Postives = 126/229 (55.02%), Query Frame = 1
Query:  157 QALGQKYMGVRPQKHADEMFKETSMHAEAGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAIT 843
            + L + ++   P      +  + S H +      + N+L+  Y   I+IG PPQ+F VV DTGSS+LW+PS  C S AC                 G    + YGSG + G++ QDTV+IG +    Q FG + +E G AF    FDGILGL Y SI++        ++  QD + EPVFAFYLS  +DKE  S  +FGG++K +Y G+L  +PL + +YW++ LD IT
Sbjct:   34 KGLLKNFLKEHPYNMIQNLLSKNSSHVQKFSYQPLRNYLDMVYVGNISIGTPPQQFSVVFDTGSSDLWVPSIYCKSKACVTHRSFNPSHSSTFHDRGKSIKLEYGSGKMSGFLGQDTVRIGQLTSTGQAFGLSKEETGKAFEHAIFDGILGLAYPSIAIKGTTTVIDNLKKQDQISEPVFAFYLS--SDKEEGSVVMFGGVDKKYYKGDLKWVPLTQTSYWQIALDRIT 260          
The following BLAST results are available for this feature:
BLAST of FC878299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
CATD_PIG4.837e-4442.45Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]
NAPSA_MOUSE1.077e-4339.38Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
CATD_CANFA1.077e-4341.23Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]
PEPA4_RABIT6.984e-4341.29Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPA2_RABIT3.466e-4240.80Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1[more]
CATE_HUMAN5.912e-4241.31Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]
CATE_CAVPO1.317e-4136.58Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1[more]
CATEB_XENLA1.317e-4141.12Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=... [more]
CATD_SHEEP1.317e-4139.81Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
PAG2_PIG2.247e-4138.43Pregnancy-associated glycoprotein 2 OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA12AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878299 ID=FC878299; Name=FC878299; organism=Citrus clementina; type=EST; length=867bp
ACACATCCCCCACACAGAAACAACAAGATGAAGGGCAGTTCTCTCATGGC
AGCCGGTGCGCTGTTTGGCTCGGCTTCGGCTGGTGTCCACAAGATGAAGC
TCAAGAAGGTTCCTCTCTCGGAGCAGCTTGAGGGCGCAAACATTGGCGAG
CACATGCAGGCTCTCGGCCAGAAGTACATGGGTGTTCGCCCCCAGAAGCA
CGCCGACGAGATGTTCAAGGAGACCTCCATGCACGCTGAGGCCGGCCACC
CCGTCGCTGTCAGCAACTTTCTGAACGCTCAGTACTTCTCCGAGATTGCC
ATCGGCAACCCTCCCCAGGAGTTCAAGGTCGTCCTCGACACTGGTAGCTC
CAACCTGTGGATCCCCTCGTCTGACTGTGGTTCCATCGCTTGCTATCTCC
ACAACAAGTACGACCACAGCGACTCTTCGTCGTACAAGAAGAACGGCTCC
GACTTTGCCATCCGCTACGGCTCGGGTGCTGTTGAGGGTTACATCTCTCA
GGACACTGTCCAGATTGGTGACATCAAGATCAAGAACCAGCTCTTCGGTG
AGGCCACTCAGGAGCCTGGCTTGGCTTTCGCCTTTGGCCGCTTCGACGGT
ATCCTCGGTCTTGGATACGACTCCATCAGTGTCAACAAGATCCCCCCTCC
TTTCTACTCAATGATTGACCAGGACCTGCTCGACGAGCCTGTCTTCGCCT
TCTACCTCAGCGACACCAACGACAAGGAGGCTGAGTCCGAGGCCATCTTC
GGTGGTATCAACAAGGACCACTACACCGGCGAGCTCACCAAGCTCCCTCT
GAGACGCAAGGCCTACTGGGAGGTTGACCTTGACGCCATCACCTTCGGCA
AGGAGAGTGCCGAGTTC
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