FC878299

Overview
NameFC878299
Unique NameFC878299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length867
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7104 contig Ccv1_Contig7104:5..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATE_RABIT (Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.247e-41
Identity = 91/251 (36.25%), Postives = 140/251 (55.78%), Query Frame = 1
Query:  100 LKKVPLSEQLEGANIGEHMQALGQKYMGVRPQKHADEMFKET-SMHAEAGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFG 849
            L +VPL  Q    ++ + ++A GQ     +  K     + ET +M   A  P+   N+L+ +YF  I+IG+PPQ F V+ DT SSNLW+PS  C S AC +               G+ F+I YG+G++ G I  D V +  + +  Q FGE+ +EPG  F    FDGILGLGY S++   + P F +M+ Q+L+  P+F+ Y+S   +  + SE  FGG +  H++G L  +P+ ++ YW++ LD I  G
Sbjct:   21 LDRVPLRRQ---PSLRKKLRAQGQLSEFWKAHKVDMVQYTETCTMEQSANEPLI--NYLDMEYFGTISIGSPPQNFTVIFDTVSSNLWVPSVYCTSPACQMHPQFRPSQSNTYSEVGTPFSIAYGTGSLTGIIGADQVSVQGLTVVGQQFGESVKEPGQTFVNAEFDGILGLGYPSLAAGGVTPVFDNMMAQNLVSLPMFSVYMSSNPEGGSGSELTFGGYDSSHFSGSLNWVPVTKQGYWQIALDEIQVG 266          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PEPA3_RABIT (Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.934e-41
Identity = 94/258 (36.43%), Postives = 141/258 (54.65%), Query Frame = 1
Query:   85 VHKMKLKKVPLSEQLEGANIGEHMQALGQKYMGVRPQKHADEMFKETSMHAEAGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKES 858
            V K  L+K  + + L    +  H   L  KY+   P+   D +  ET           + N+L+ +YF  I IG P Q+F V+ DTGSSNLW+PS  C S AC +                   +I YG+G++ G++  DTV++G+I+  NQ+FG +  EPG    +  FDGILGL Y SIS +   P F +M ++ L+ E +F+ YLS  +D E+ S  +FGGI+  +YTG L  +P+  + YW++ LD+IT   E+
Sbjct:   23 VRKKSLRKNLIEKGLLKDYLKTHTPNLATKYL---PKAAFDSVPTET-----------LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSAACSVHNQFNPEDSSTFQATSESLSITYGTGSMTGFLGYDTVKVGNIEDTNQIFGLSESEPGSFLYYAPFDGILGLAYPSISSSDATPVFDNMWNEGLVSEDLFSVYLS--SDDESGSVVMFGGIDSSYYTGSLNWVPVSYEGYWQITLDSITMDGET 264          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATEA_XENLA (Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.934e-41
Identity = 78/197 (39.59%), Postives = 118/197 (59.90%), Query Frame = 1
Query:  265 NFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKE 855
            N+++ +YF EI++G PPQ F V+ DTGSSNLW+PS  C S AC                 G++F+++YG+G++ G I  D V +  I ++NQ FGE+  EPG  F    FDGILGLGY SI+V    P F +MI Q+L++ P+F+ Y+S   +     E +FGG +   ++G+L  +P+  + YW++ LD +    E
Sbjct:   68 NYMDVEYFGEISVGTPPQNFTVIFDTGSSNLWVPSVYCISQACAQHDRFQPQLSSTYESNGNNFSLQYGTGSLSGVIGIDAVTVEGILVQNQQFGESVSEPGSTFVDAEFDGILGLGYPSIAVGDCTPVFDNMIAQNLVELPMFSVYMSRNPNSAVGGELVFGGFDASRFSGQLNWVPVTNQGYWQIQLDNVQINGE 264          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATE_MOUSE (Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.537e-41
Identity = 80/195 (41.03%), Postives = 116/195 (59.49%), Query Frame = 1
Query:  265 NFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFG 849
            N+L+ +YF  I+IG PPQ F V+ DTGSSNLW+PS  C S AC                 G+ F+I+YG+G++ G I  D V +  + +  Q FGE+ +EPG  F    FDGILGLGY S++   + P F +M+ Q+L+  P+F+ YLS      + SE  FGG +  H++G L  +P+ ++AYW++ LD I  G
Sbjct:   73 NYLDMEYFGTISIGTPPQNFTVIFDTGSSNLWVPSVYCTSPACKAHPVFHPSQSDTYTEVGNHFSIQYGTGSLTGIIGADQVSVEGLTVDGQQFGESVKEPGQTFVNAEFDGILGLGYPSLAAGGVTPVFDNMMAQNLVALPMFSVYLSSDPQGGSGSELTFGGYDPSHFSGSLNWIPVTKQAYWQIALDGIQVG 267          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.115e-40
Identity = 83/211 (39.34%), Postives = 123/211 (58.29%), Query Frame = 1
Query:  250 PVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCG--SIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQI---------GDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFG 849
            P  + N+++AQY+ EI IG PPQ F VV DTGS+NLW+PS  C    IAC+                G+ F I YGSG++ GY+SQDTV +         G + ++ Q FGEA ++PG+ F   +FDGILG+ Y  ISVN + P F +++ Q L+D+ VF+F+L+     +   E + GG +  +Y G L    + R+AYW++ +D +  G
Sbjct:   48 PELLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWTHRKYNSDKSSTYVKNGTTFDIHYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDKNVFSFFLNRDPKAQPGGELMLGGTDSKYYRGSLMFHNVTRQAYWQIHMDQLDVG 258          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CATE_RAT (Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.902e-40
Identity = 80/208 (38.46%), Postives = 122/208 (58.65%), Query Frame = 1
Query:  226 SMHAEAGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFG 849
            S + + G    + N+L+ +YF  ++IG+P Q F V+ DTGSSNLW+PS  C S AC                 G+ F+I+YG+G++ G I  D V +  + ++ Q FGE+ +EPG  F    FDGILGLGY S++V  + P F +M+ Q+L+  P+F+ YLS      + SE  FGG +  H++G L  +P+ ++ YW++ LD I  G
Sbjct:   61 SCNVDKGINEPLINYLDMEYFGTVSIGSPSQNFTVIFDTGSSNLWVPSVYCTSPACKAHPVFHPSQSSTYMEVGNHFSIQYGTGSLTGIIGADQVSVEGLTVEGQQFGESVKEPGQTFVNAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVALPMFSVYLSSDPQGGSGSELTFGGYDPSHFSGSLNWIPVTKQGYWQIALDGIQVG 268          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PEPE_CHICK (Embryonic pepsinogen OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.244e-40
Identity = 79/197 (40.10%), Postives = 121/197 (61.42%), Query Frame = 1
Query:  265 NFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKE 855
            N L+ +Y+  I+IG PPQ+F VV DTGSSNLW+PS  C S AC                 G + +I YG+G +EG +  DTV +  +   NQLFG +T EPG  F + +FDGILGLGY S++ + I P F +M+++ LL++ +F+ YLS    +   S  +FGGI++ ++TG +  +P+  + YW++ +D+I   K+
Sbjct:   70 NTLDMEYYGTISIGTPPQDFTVVFDTGSSNLWVPSVSCTSPACQSHQMFNPSQSSTYKSTGQNLSIHYGTGDMEGTVGCDTVTVASLMDTNQLFGLSTSEPGQFFVYVKFDGILGLGYPSLAADGITPVFDNMVNESLLEQNLFSVYLS---REPMGSMVVFGGIDESYFTGSINWIPVSYQGYWQISMDSIIVNKQ 263          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PEPA_MACMU (Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.746e-39
Identity = 92/252 (36.51%), Postives = 136/252 (53.97%), Query Frame = 1
Query:  106 KVPLSEQLE-GANIGEHMQALGQKYMGVRPQKHADEMFKETSMHAEAGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKES 858
            KVPL  +     N+ EH   L + ++    +  A + F +T           + N+L+ +YF  I IG P Q+F V+ DTGSSNLW+PS  C S+AC                     +I YG+G++ G +  DTVQ+G I   NQ+FG +  EPG    +  FDGILGL Y SIS +   P F ++ DQ L+ + +F+ YLS   D ++ S  IFGGI+  +YTG L  +P+  + YW++ +D+IT   E+
Sbjct:   19 KVPLVRKKSLRRNLSEH--GLLKDFLKKHNRNPASKYFPQTEAPTLIDEQ-PLENYLDVEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACTNHNLFNPQDSSTYQSTSGTLSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWDQGLVSQDLFSVYLS--ADDQSGSVVIFGGIDSSYYTGSLNWVPVSVEGYWQISVDSITMNGEA 265          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PEPA_PIG (Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 4.685e-39
Identity = 80/200 (40.00%), Postives = 117/200 (58.50%), Query Frame = 1
Query:  259 VSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKES 858
            + N+L+ +YF  I IG P Q+F V+ DTGSSNLW+PS  C S+AC                   + +I YG+G++ G +  DTVQ+G I   NQ+FG +  EPG    +  FDGILGL Y SIS +   P F ++ DQ L+ + +F+ YLS  +D  + S  + GGI+  +YTG L  +P+  + YW++ LD+IT   E+
Sbjct:   65 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD--SGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGET 262          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PEPA1_MACFU (Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.685e-39
Identity = 81/200 (40.50%), Postives = 117/200 (58.50%), Query Frame = 1
Query:  259 VSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKES 858
            + N+L+ +YF  I IG P Q+F V+ DTGSSNLW+PS  C S+AC                     +I YG+G++ G +  DTVQ+G I   NQ+FG +  EPG    +  FDGILGL Y SIS +   P F ++ DQ L+ + +F+ YLS   D ++ S  IFGGI+  +YTG L  +P+  + YW++ +D+IT   E+
Sbjct:   68 LENYLDVEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACTNHNLFNPQDSSTYQSTSGTLSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWDQGLVSQDLFSVYLS--ADDQSGSVVIFGGIDSSYYTGSLNWVPVSVEGYWQISVDSITMNGEA 265          
The following BLAST results are available for this feature:
BLAST of FC878299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
CATE_RABIT2.247e-4136.25Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 ... [more]
PEPA3_RABIT2.934e-4136.43Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1[more]
CATEA_XENLA2.934e-4139.59Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=... [more]
CATE_MOUSE6.537e-4141.03Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1[more]
CATD_BOVIN1.115e-4039.34Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
CATE_RAT1.902e-4038.46Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3[more]
PEPE_CHICK3.244e-4040.10Embryonic pepsinogen OS=Gallus gallus PE=2 SV=1[more]
PEPA_MACMU2.746e-3936.51Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1[more]
PEPA_PIG4.685e-3940.00Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3[more]
PEPA1_MACFU4.685e-3940.50Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA12AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878299 ID=FC878299; Name=FC878299; organism=Citrus clementina; type=EST; length=867bp
ACACATCCCCCACACAGAAACAACAAGATGAAGGGCAGTTCTCTCATGGC
AGCCGGTGCGCTGTTTGGCTCGGCTTCGGCTGGTGTCCACAAGATGAAGC
TCAAGAAGGTTCCTCTCTCGGAGCAGCTTGAGGGCGCAAACATTGGCGAG
CACATGCAGGCTCTCGGCCAGAAGTACATGGGTGTTCGCCCCCAGAAGCA
CGCCGACGAGATGTTCAAGGAGACCTCCATGCACGCTGAGGCCGGCCACC
CCGTCGCTGTCAGCAACTTTCTGAACGCTCAGTACTTCTCCGAGATTGCC
ATCGGCAACCCTCCCCAGGAGTTCAAGGTCGTCCTCGACACTGGTAGCTC
CAACCTGTGGATCCCCTCGTCTGACTGTGGTTCCATCGCTTGCTATCTCC
ACAACAAGTACGACCACAGCGACTCTTCGTCGTACAAGAAGAACGGCTCC
GACTTTGCCATCCGCTACGGCTCGGGTGCTGTTGAGGGTTACATCTCTCA
GGACACTGTCCAGATTGGTGACATCAAGATCAAGAACCAGCTCTTCGGTG
AGGCCACTCAGGAGCCTGGCTTGGCTTTCGCCTTTGGCCGCTTCGACGGT
ATCCTCGGTCTTGGATACGACTCCATCAGTGTCAACAAGATCCCCCCTCC
TTTCTACTCAATGATTGACCAGGACCTGCTCGACGAGCCTGTCTTCGCCT
TCTACCTCAGCGACACCAACGACAAGGAGGCTGAGTCCGAGGCCATCTTC
GGTGGTATCAACAAGGACCACTACACCGGCGAGCTCACCAAGCTCCCTCT
GAGACGCAAGGCCTACTGGGAGGTTGACCTTGACGCCATCACCTTCGGCA
AGGAGAGTGCCGAGTTC
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