FC878299

Overview
NameFC878299
Unique NameFC878299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length867
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7104 contig Ccv1_Contig7104:5..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PEPAF_RABIT (Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.331e-36
Identity = 81/198 (40.91%), Postives = 115/198 (58.08%), Query Frame = 1
Query:  265 NFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKES 858
            N+L+  Y   I+IG PPQEFKVVLDTGS++LW+PS  C S AC                 G    I YGSG + G+++ DTVQI  +    Q FG + QEPG    +  FDGILGL Y S+S   I P F ++  Q L+ + +FAFYLS  + +E  S  + GG++  +Y+G+L  +P+ R  YW++ +D I+   E+
Sbjct:   68 NYLDLAYIGIISIGTPPQEFKVVLDTGSADLWVPSIYCSSPACGKHNTFNPLLSSTFLVSGRPINIVYGSGRMSGFLAYDTVQIAGLVDVAQAFGLSLQEPGKFMEYAVFDGILGLSYPSLSFEGITPVFDNLWAQGLISQNLFAFYLS--SKEERGSMLMLGGVDPSYYSGDLHWVPVSRPLYWQLAVDRISMNGEA 263          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PEPC_RABIT (Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.080e-35
Identity = 73/199 (36.68%), Postives = 107/199 (53.77%), Query Frame = 1
Query:  265 NFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKESA 861
            ++L+A YF EI+IG P Q F V+ DTGSSNLW+PS  C S AC                    F++ YGSG++ G+   DT  I +I++ NQ FG +  EPG  F +  FDGI+GL Y S+SV    P    M+    +   VF+FYLS     +     + GG++   YTG++   P+ R+ YW++ +D      E++
Sbjct:   67 DYLDAAYFGEISIGTPSQNFLVLFDTGSSNLWVPSVYCQSEACTTHNRFNPSKSSTFYTYDQTFSLEYGSGSLTGFFGYDTFTIQNIEVPNQEFGLSETEPGTNFLYAEFDGIMGLAYPSLSVGDATPALQGMVQDGTISSSVFSFYLSSQQGTDG-GALVLGGVDSSLYTGDIYWAPVTRELYWQIGIDEFLISSEAS 264          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PEPA_CHICK (Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.842e-35
Identity = 75/199 (37.69%), Postives = 115/199 (57.79%), Query Frame = 1
Query:  259 VSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKE 855
            ++N+++A Y+  I+IG P Q+F V+ DTGSSNLW+PS  C S AC                      I YG+G++ G +  DTV +  I ++NQ+FG +  EPG  F +  FDGILGL + SIS +   P F +M+ Q L+ + +F+ YLS   D E  S  +FGGI+ ++ T  +  +PL  + YW++ +D +T G +
Sbjct:   51 MTNYMDASYYGTISIGTPQQDFSVIFDTGSSNLWVPSIYCKSSACSNHKRFDPSKSSTYVSTNETVYIAYGTGSMSGILGYDTVAVSSIDVQNQIFGLSETEPGSFFYYCNFDGILGLAFPSISSSGATPVFDNMMSQHLVAQDLFSVYLS--KDGETGSFVLFGGIDPNYTTKGIYWVPLSAETYWQITMDRVTVGNK 247          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CHYM_CALJA (Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.406e-35
Identity = 75/195 (38.46%), Postives = 113/195 (57.95%), Query Frame = 1
Query:  259 VSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAIT 843
            ++N+L+ QYF +I IG PPQEF VV DTGSS+LW+PS  C S+AC                     +I+YG+G+++G +  DTV +  I   +Q  G +TQEPG  F +  FDGILGL Y S++     P F +M+D+ L+ + +F+ Y+S     E  S    G I+  +YTG L  +P+  + YW+  +D++T
Sbjct:   66 LTNYLDCQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSVYCNSVACQNHHRFDPSKSSTFQNMDKSLSIQYGTGSMQGLLGYDTVTVSSIVDPHQTVGLSTQEPGDVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVAQDLFSVYMS---RNEQGSMLTLGAIDPSYYTGSLHWIPVTVQEYWQFTVDSVT 257          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PEP2B_GADMO (Pepsin-2B OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.104e-35
Identity = 78/201 (38.81%), Postives = 110/201 (54.73%), Query Frame = 1
Query:  259 VSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKESA 861
            + N  + +Y+  I+IG PP+ FKV+ DTGSSNLW+ SS C + AC                 G    + YG+G + G + QDTV +G     NQ  GE+  EPG   A   FDGILGL Y SI+     P F +M  Q L+++ +F+FYLS        SE + GG++  HYTG +  +P+  + YW+V LD IT   ++A
Sbjct:    6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGAN--GSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQTA 204          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PAG2_BOVIN (Pregnancy-associated glycoprotein 2 OS=Bos taurus GN=PAG2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.474e-34
Identity = 78/199 (39.20%), Postives = 114/199 (57.29%), Query Frame = 1
Query:  247 HPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAIT 843
            HP+   N+L+  Y   I IG PPQEF+VV DTGS+NLW+P   C S ACY                GS   I YGSG ++G++  DTV+IG++    Q FG + +E G  F    FDGILGL + ++ +    P F ++       EPVFAFYL +TN  E  S  +FGG++  +Y GEL  +P+ + ++W++ ++ I+
Sbjct:   58 HPLR--NYLDTAYVGNITIGTPPQEFRVVFDTGSANLWVPCITCTSPACYTHKTFNPQNSSSFREVGSPITIFYGSGIIQGFLGSDTVRIGNLVSPEQSFGLSLEEYG--FDSLPFDGILGLAFPAMGIEDTIPIFDNLWSHGAFSEPVFAFYL-NTNKPEG-SVVMFGGVDHRYYKGELNWIPVSQTSHWQISMNNIS 250          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 4.537e-34
Identity = 93/262 (35.50%), Postives = 138/262 (52.67%), Query Frame = 1
Query:   85 VHKMKLKKVPLS-EQLEGANIGEHMQALGQKYM-GVRPQKHADEMFKETSMHAEAGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDC--GSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGD----IKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMI-DQDLLDEPVFAFYLS-DTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAI 840
            + ++KL+K   + EQ +  +I EH++A   KY+ G  P K A   F E            +S++ NAQY+  + IG PPQ F+V+ DTGSSNLW+P ++C  G IAC +               G+ F I+YG+G+++G +  D V  G        KNQ    AT EPG+ F   +FDGI G+G+D+ISVNKI  P   +  +  +    +FAF+LS D ND     E      + +HY G +   PL  + YW + L ++
Sbjct:   18 IQRIKLEKRTYTREQYKFGSIQEHLKA---KYVPGYIPNKDA---FNE-----------GLSDYSNAQYYGPVTIGTPPQNFQVLFDTGSSNLWVPCANCPFGDIACRMHNRFDCKKSSSCTATGASFEIQYGTGSMKGTVDNDVVCFGHDTTYCTDKNQGLACATSEPGITFVAAKFDGIFGMGWDTISVNKISQPMDQIFANSAICKNQLFAFWLSRDANDITNGGEITLCETDPNHYVGNIAWEPLVSEDYWRIKLASV 262          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PEPC_CAVPO (Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.740e-34
Identity = 78/247 (31.58%), Postives = 128/247 (51.82%), Query Frame = 1
Query:  106 KVPLSEQLEGANIGEHMQALGQKYMGVRPQKHADEMFK----ETSMHAEAGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLD 834
            KVPL +      +      LG      +PQ HA + F+    +T   +    P++   +++A YF +I++G PPQ F+V+ DTGSSNLW+PS  C S+AC                    F++ YG+G++ G    DT+ I DI++  Q FG +  EPG  F +  FDGILGLGY  +S          ++ +  L + +F+ YL      + E + I GG+++  YTG++   P+ ++ YW++ ++
Sbjct:   20 KVPLKKIKSIREVLREKGLLGDFLKNHKPQ-HARKFFRNRLAKTGDFSVLYEPMS---YMDAAYFGQISLGTPPQSFQVLFDTGSSNLWVPSVYCSSLACTTHTRFNPRDSSTYVATDQSFSLEYGTGSLTGVFGYDTMTIQDIQVPKQEFGLSETEPGSDFVYAEFDGILGLGYPGLSEGGATTAMQGLLREGALSQSLFSVYLGSQQGSD-EGQLILGGVDESLYTGDIYWTPVTQELYWQIGIE 261          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: RENI_SHEEP (Renin OS=Ovis aries GN=REN PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.320e-33
Identity = 72/202 (35.64%), Postives = 113/202 (55.94%), Query Frame = 1
Query:  250 PVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSI--ACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLS--DTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAIT 843
            PV ++N+L+ QY+ EI IG PPQ FKV+ DTGS+NLW+PS+ C  +  AC +               G++F I YGSG V+G++SQD V +G I +  Q FGE T+ P   F   +FDG+LG+G+ + +V  + P F  ++ Q +L E VF+ Y S    N      E + GG +  +Y      + + +   W++ +  ++
Sbjct:   69 PVVLTNYLDTQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSPLYTACEIHSLYDSLESSSYVENGTEFTIYYGSGKVKGFLSQDLVTVGGITV-TQTFGEVTELPLRPFMLAKFDGVLGMGFPAQAVGGVTPVFDHILAQRVLTEDVFSVYYSRDSKNSHLLGGEIVLGGSDPQYYQENFHYVSISKPGSWQIRMKGVS 269          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CHYM_SHEEP (Chymosin OS=Ovis aries GN=CYM PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.320e-33
Identity = 72/198 (36.36%), Postives = 115/198 (58.08%), Query Frame = 1
Query:  253 VAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAI-FGGINKDHYTGELTKLPLRRKAYWEVDLDAIT 843
            V ++N+L++QYF +I +G PPQEF V+ DTGSS+ W+PS  C S AC                 G   +IRYG+G+++G +  DTV + +I    Q  G +TQEPG  F +  FDGILG+ Y S++     P F +M+D+ L+ + +F+ Y+    D+  +   +  G I+  +YTG L  +P+  + YW+  +D++T
Sbjct:   64 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIRYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPSLASEYSVPVFDNMMDRRLVAQDLFSVYM----DRSGQGSMLTLGAIDPSYYTGSLHWVPVTLQKYWQFTVDSVT 257          
The following BLAST results are available for this feature:
BLAST of FC878299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
PEPAF_RABIT6.331e-3640.91Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPC_RABIT1.080e-3536.68Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV... [more]
PEPA_CHICK1.842e-3537.69Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1[more]
CHYM_CALJA2.406e-3538.46Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1[more]
PEP2B_GADMO4.104e-3538.81Pepsin-2B OS=Gadus morhua PE=1 SV=1[more]
PAG2_BOVIN3.474e-3439.20Pregnancy-associated glycoprotein 2 OS=Bos taurus ... [more]
ASP3_CAEEL4.537e-3435.50Aspartic protease 3 OS=Caenorhabditis elegans GN=a... [more]
PEPC_CAVPO7.740e-3431.58Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1[more]
RENI_SHEEP1.320e-3335.64Renin OS=Ovis aries GN=REN PE=2 SV=1[more]
CHYM_SHEEP1.320e-3336.36Chymosin OS=Ovis aries GN=CYM PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA12AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878299 ID=FC878299; Name=FC878299; organism=Citrus clementina; type=EST; length=867bp
ACACATCCCCCACACAGAAACAACAAGATGAAGGGCAGTTCTCTCATGGC
AGCCGGTGCGCTGTTTGGCTCGGCTTCGGCTGGTGTCCACAAGATGAAGC
TCAAGAAGGTTCCTCTCTCGGAGCAGCTTGAGGGCGCAAACATTGGCGAG
CACATGCAGGCTCTCGGCCAGAAGTACATGGGTGTTCGCCCCCAGAAGCA
CGCCGACGAGATGTTCAAGGAGACCTCCATGCACGCTGAGGCCGGCCACC
CCGTCGCTGTCAGCAACTTTCTGAACGCTCAGTACTTCTCCGAGATTGCC
ATCGGCAACCCTCCCCAGGAGTTCAAGGTCGTCCTCGACACTGGTAGCTC
CAACCTGTGGATCCCCTCGTCTGACTGTGGTTCCATCGCTTGCTATCTCC
ACAACAAGTACGACCACAGCGACTCTTCGTCGTACAAGAAGAACGGCTCC
GACTTTGCCATCCGCTACGGCTCGGGTGCTGTTGAGGGTTACATCTCTCA
GGACACTGTCCAGATTGGTGACATCAAGATCAAGAACCAGCTCTTCGGTG
AGGCCACTCAGGAGCCTGGCTTGGCTTTCGCCTTTGGCCGCTTCGACGGT
ATCCTCGGTCTTGGATACGACTCCATCAGTGTCAACAAGATCCCCCCTCC
TTTCTACTCAATGATTGACCAGGACCTGCTCGACGAGCCTGTCTTCGCCT
TCTACCTCAGCGACACCAACGACAAGGAGGCTGAGTCCGAGGCCATCTTC
GGTGGTATCAACAAGGACCACTACACCGGCGAGCTCACCAAGCTCCCTCT
GAGACGCAAGGCCTACTGGGAGGTTGACCTTGACGCCATCACCTTCGGCA
AGGAGAGTGCCGAGTTC
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