FC878299

Overview
NameFC878299
Unique NameFC878299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length867
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7104 contig Ccv1_Contig7104:5..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CHYM_BOVIN (Chymosin OS=Bos taurus GN=CYM PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 3.841e-33
Identity = 73/197 (37.06%), Postives = 115/197 (58.38%), Query Frame = 1
Query:  253 VAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAIT 843
            V ++N+L++QYF +I +G PPQEF V+ DTGSS+ W+PS  C S AC                 G   +I YG+G+++G +  DTV + +I    Q  G +TQEPG  F +  FDGILG+ Y S++     P F +M+++ L+ + +F+ Y+ D N +  ES    G I+  +YTG L  +P+  + YW+  +D++T
Sbjct:   64 VPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYM-DRNGQ--ESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVT 257          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PAG1_PIG (Pregnancy-associated glycoprotein 1 OS=Sus scrofa GN=PAG1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.557e-33
Identity = 77/194 (39.69%), Postives = 105/194 (54.12%), Query Frame = 1
Query:  265 NFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITF 846
            N+L+  Y   I IG PPQ F V+ DT SS+LW+PS+ C S AC                      +   SG V G +  DTVQIG  K +NQ FG +  EP        FDG+LGLGY S+++    P F ++  Q  + EPVFA YLS TN K+  S  + GG++ + +TG L  +PL  + YW++ LD IT+
Sbjct:   70 NYLDMVYVGNITIGTPPQLFSVIFDTASSDLWVPSNQCHSRACVTHRSFNPTLSSTFQSSNRTVKLAPHSGLVSGLLGYDTVQIGRFKSENQAFGLSQSEPVKELENAFFDGVLGLGYPSLAIQGTTPVFDNLRKQGQIPEPVFALYLS-TNTKKG-SVLMIGGVDNNFFTGNLKWVPLSARNYWQITLDRITW 261          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PAG1_BOVIN (Pregnancy-associated glycoprotein 1 OS=Bos taurus GN=PAG1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.461e-32
Identity = 79/203 (38.92%), Postives = 111/203 (54.68%), Query Frame = 1
Query:  247 HPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKE 855
            HP+   N  +  Y   I IG PPQEF+VV DT SS+LW+PS  C S AC                    F I YGSG ++G +  DTV+IG++   +Q FG + +E G  F    +DG+LGL Y +IS +   P F  + +Q  + EPVFAFYLS   D+   S  +FGG++  +Y GEL  +PL +   W V +D I+  ++
Sbjct:   61 HPLR--NIKDLVYMGNITIGTPPQEFQVVFDTASSDLWVPSDFCTSPACSTHVRFRHLQSSTFRLTNKTFRITYGSGRMKGVVVHDTVRIGNLVSTDQPFGLSIEEYG--FEGRIYDGVLGLNYPNISFSGAIPIFDKLKNQRAISEPVFAFYLS--KDEREGSVVMFGGVDHRYYEGELNWVPLIQAGDWSVHMDRISIERK 257          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CARDF_CYNCA (Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.577e-29
Identity = 75/205 (36.59%), Postives = 111/205 (54.15%), Query Frame = 1
Query:  253 VAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKESAEF 867
            VA++N  +  Y+ EI IG PPQ+F V+ DTGSS LW+PSS   S+                          Y S     Y SQD+V IGD+ +K Q F EAT+E    F    FDGILGL + +ISV    P +Y+M++Q L+    F+F+L+   D+E   E +FGG++ +H+ G+ T +P+  + YW+  +  +  G +S  F
Sbjct:    8 VALTNDRDTSYYGEIGIGTPPQKFTVIFDTGSSVLWVPSSKAHSM--------------------------YESSGSSTYKSQDSVTIGDLVVKEQDFIEATEEADNVFLNRLFDGILGLSFQTISV----PVWYNMLNQGLVKR--FSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGF 180          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PAG1_SHEEP (Pregnancy-associated glycoprotein 1 OS=Ovis aries GN=PAG1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.395e-29
Identity = 78/206 (37.86%), Postives = 108/206 (52.43%), Query Frame = 1
Query:  247 HPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIA---CYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKE 855
            HP+   N ++  Y   I IG PPQEF+VV DTGSS+L +PS +C S     C                    F I +GSG + G+++ DTV+IGD+   +Q FG    E  L      FDGILGL Y  IS +   P F  + ++    EPVFAFYL+   DK+  S  +FGG++  +Y GEL  +PL     W + LD I+  ++
Sbjct:   61 HPLR--NIMDMLYVGNITIGTPPQEFQVVFDTGSSDLLVPSINCLSPTKRPCSKQDKFKHHQSSTFRFTNDTFRIYFGSGTMRGFVAHDTVRIGDLVSTDQPFGLIFLESWLDIP---FDGILGLNYPKISFSGAIPIFDKLKNEGAFSEPVFAFYLN--KDKQEGSVVMFGGVDHRYYKGELNWVPLIHPGEWSIPLDRISMRRK 259          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PLM1_PLAFA (Plasmepsin-1 OS=Plasmodium falciparum PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.279e-28
Identity = 71/210 (33.81%), Postives = 108/210 (51.43%), Query Frame = 1
Query:  241 AGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGL--AFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKESAE 864
            AG  V +++  N  Y+ E  IG+  Q+F  + DTGS+NLW+PS+ C +I C                 G+   + Y SG V G+ S+D V I ++    + F E T   G   A+  G+FDGI+GLG+  +S+  + P    + +Q+ +++ VF FYL    D + +     GGI    Y G+LT   L    YW+VDLD + FG  + E
Sbjct:  125 AGDSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKNLYDSNKSKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFPYK-FIEVTDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYL--PFDDKHKGYLTIGGIEDRFYEGQLTYEKLNHDLYWQVDLD-LHFGNLTVE 330          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PLM1_PLAF7 (Plasmepsin-1 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0076 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.279e-28
Identity = 71/210 (33.81%), Postives = 108/210 (51.43%), Query Frame = 1
Query:  241 AGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGL--AFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKESAE 864
            AG  V +++  N  Y+ E  IG+  Q+F  + DTGS+NLW+PS+ C +I C                 G+   + Y SG V G+ S+D V I ++    + F E T   G   A+  G+FDGI+GLG+  +S+  + P    + +Q+ +++ VF FYL    D + +     GGI    Y G+LT   L    YW+VDLD + FG  + E
Sbjct:  125 AGDSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKNLYDSNKSKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFPYK-FIEVTDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYL--PFDDKHKGYLTIGGIEDRFYEGQLTYEKLNHDLYWQVDLD-LHFGNLTVE 330          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: PLM2_PLAFA (Plasmepsin-2 OS=Plasmodium falciparum PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.604e-23
Identity = 62/208 (29.81%), Postives = 101/208 (48.56%), Query Frame = 1
Query:  220 ETSMHAEAGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGL--AFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDA 837
            +T+    +   + + +F N  ++ +  +G+  Q F  +LDTGS+NLW+PS  C +  C                 G+   + Y SG V G+ S+D V +G++ +  + F E     G    +    FDGILGLG+  +S+  + P    + +Q+ ++  +F FYL   +DK      I GGI +  Y G LT   L    YW++ LDA
Sbjct:  119 KTNYLGSSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL-PVHDKHTGFLTI-GGIEERFYEGPLTYEKLNHDLYWQITLDA 323          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: ASPR1_PHARH (Aspartic protease OS=Phaffia rhodozyma GN=pr1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.604e-23
Identity = 68/184 (36.96%), Postives = 96/184 (52.17%), Query Frame = 1
Query:  295 IAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGA-VEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAIT 843
            I IG   Q F V  DTGSS+LW+PSS C S AC                    F+I YG G+   G + +D V    ++  +Q+FG  T E   +F+    DGI GLG+ +++       F+S+I+Q  +  PVF+F L+ TN     SE   GGIN  HYTG +T  P+ +KAYW + L  ++
Sbjct:  101 ITIGG--QSFTVDWDTGSSDLWVPSSACSSAAC--NAHHKYTLTSTGKKQSGTFSISYGDGSSASGPVYKDNVVASGLQATSQVFGAVTSESS-SFSSDPSDGISGLGWPALAQLSGTSYFWSLINQGTVTSPVFSFRLATTN-----SELYLGGINSAHYTGAITYTPVTQKAYWTIALGGVS 274          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.706e-23
Identity = 69/205 (33.66%), Postives = 100/205 (48.78%), Query Frame = 1
Query:  253 VAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKESAEF 867
            VA++N  +  YF EI IG PPQ+F V+ DTGSS LW+PSS   S+                          Y S     Y  QD             F EAT E    F    FDGILGL + +ISV    P +Y+M++Q L+    F+F+L+   D+E   E +FGG++ +H+ G+ T +P+  + YW+  +  +  G +S  F
Sbjct:    7 VALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKAHSM--------------------------YESSGSSTYKEQD-------------FIEATDETDNVFLHRLFDGILGLSFQTISV----PVWYNMLNQGLVKR--FSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGF 166          
The following BLAST results are available for this feature:
BLAST of FC878299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
CHYM_BOVIN3.841e-3337.06Chymosin OS=Bos taurus GN=CYM PE=1 SV=3[more]
PAG1_PIG8.557e-3339.69Pregnancy-associated glycoprotein 1 OS=Sus scrofa ... [more]
PAG1_BOVIN9.461e-3238.92Pregnancy-associated glycoprotein 1 OS=Bos taurus ... [more]
CARDF_CYNCA2.577e-2936.59Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PAG1_SHEEP4.395e-2937.86Pregnancy-associated glycoprotein 1 OS=Ovis aries ... [more]
PLM1_PLAFA1.279e-2833.81Plasmepsin-1 OS=Plasmodium falciparum PE=1 SV=2[more]
PLM1_PLAF71.279e-2833.81Plasmepsin-1 OS=Plasmodium falciparum (isolate 3D7... [more]
PLM2_PLAFA3.604e-2329.81Plasmepsin-2 OS=Plasmodium falciparum PE=1 SV=1[more]
ASPR1_PHARH3.604e-2336.96Aspartic protease OS=Phaffia rhodozyma GN=pr1 PE=1... [more]
CARDH_CYNCA4.706e-2333.66Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA12AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878299 ID=FC878299; Name=FC878299; organism=Citrus clementina; type=EST; length=867bp
ACACATCCCCCACACAGAAACAACAAGATGAAGGGCAGTTCTCTCATGGC
AGCCGGTGCGCTGTTTGGCTCGGCTTCGGCTGGTGTCCACAAGATGAAGC
TCAAGAAGGTTCCTCTCTCGGAGCAGCTTGAGGGCGCAAACATTGGCGAG
CACATGCAGGCTCTCGGCCAGAAGTACATGGGTGTTCGCCCCCAGAAGCA
CGCCGACGAGATGTTCAAGGAGACCTCCATGCACGCTGAGGCCGGCCACC
CCGTCGCTGTCAGCAACTTTCTGAACGCTCAGTACTTCTCCGAGATTGCC
ATCGGCAACCCTCCCCAGGAGTTCAAGGTCGTCCTCGACACTGGTAGCTC
CAACCTGTGGATCCCCTCGTCTGACTGTGGTTCCATCGCTTGCTATCTCC
ACAACAAGTACGACCACAGCGACTCTTCGTCGTACAAGAAGAACGGCTCC
GACTTTGCCATCCGCTACGGCTCGGGTGCTGTTGAGGGTTACATCTCTCA
GGACACTGTCCAGATTGGTGACATCAAGATCAAGAACCAGCTCTTCGGTG
AGGCCACTCAGGAGCCTGGCTTGGCTTTCGCCTTTGGCCGCTTCGACGGT
ATCCTCGGTCTTGGATACGACTCCATCAGTGTCAACAAGATCCCCCCTCC
TTTCTACTCAATGATTGACCAGGACCTGCTCGACGAGCCTGTCTTCGCCT
TCTACCTCAGCGACACCAACGACAAGGAGGCTGAGTCCGAGGCCATCTTC
GGTGGTATCAACAAGGACCACTACACCGGCGAGCTCACCAAGCTCCCTCT
GAGACGCAAGGCCTACTGGGAGGTTGACCTTGACGCCATCACCTTCGGCA
AGGAGAGTGCCGAGTTC
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