FC878299

Overview
NameFC878299
Unique NameFC878299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length867
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7104 contig Ccv1_Contig7104:5..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CARDG_CYNCA (Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.706e-23
Identity = 69/205 (33.66%), Postives = 101/205 (49.27%), Query Frame = 1
Query:  253 VAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKESAEF 867
            VA++N  +  YF EI IG PPQ+F V+ DTGSS LW+PSS   S+                          Y S     Y  QD             F EAT+E    F    FDGILGL + +ISV    P +Y+M++Q L+    F+F+L+   D+E   E +FGG++ +H+ G+ T +P+  + YW+  +  +  G +S  F
Sbjct:    7 VALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSYLWVPSSKAHSM--------------------------YESSDSSTYKEQD-------------FIEATEEADNVFLNRLFDGILGLSFQTISV----PVWYNMVNQGLVKR--FSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGF 166          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CARP4_RHINI (Rhizopuspepsin-4 OS=Rhizopus niveus PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.984e-22
Identity = 76/244 (31.15%), Postives = 119/244 (48.77%), Query Frame = 1
Query:  109 VPLSEQLE-GANIGEHMQALGQKYMGVRPQKHADEMFKETSMHAEAGHPVAVSNFLN-AQYFSEIAIGNPPQEFKVVLDTGSSNLWIPS---SDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSG-AVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSI-SVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYW 819
            VPLS+      N    ++    KY   R    +       S   E+   V V++  N  +Y+ E+ +G P  + K+  DTGSS+LW  S   ++CGS                    G  ++I YG G +  G + +DTV +G +KIKNQ+   A +E   +F+ G  DG+LGLG+DSI +V+ +  P  ++I Q L+  PVF  YL   ++     E IFGG +   ++G+LT + +     W
Sbjct:   30 VPLSKNANYKPNAKRAIEKANAKYARFRSSSSSSSSSSCGSAGTESSGSVPVTDDGNDIEYYGEVTVGTPGIKLKLDFDTGSSDLWFASTLCTNCGS----SQTKYDPSQSSTYAKDGRTWSISYGDGSSASGILGKDTVNLGGLKIKNQIIELAKREAS-SFSSGPSDGLLGLGFDSITTVSGVQTPMDNLISQGLISNPVFGVYLGKESN-GGGGEYIFGGYDSSKFSGDLTTIAVDNSNGW 267          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CARP_RHICH (Rhizopuspepsin OS=Rhizopus chinensis PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.977e-21
Identity = 63/198 (31.82%), Postives = 103/198 (52.02%), Query Frame = 1
Query:  274 NAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPS---SDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSG-AVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSI-SVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPL-RRKAYWEVDLDAITFG 849
            + +Y+ ++ IG P ++F +  DTGSS+LWI S   ++CGS                    G  ++I YG G +  G +++D V +G + IK Q   E  +    +FA G  DG+LGLG+D+I +V  +  P  ++I Q L+  P+F  YL   ++     E IFGG +   + G LT +P+   + +W + +D  T G
Sbjct:   82 DVEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGS----RQTKYDPKQSSTYQADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTI-ELAKREAASFANGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKASN-GGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVG 273          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CARP_SYNRA (Syncephapepsin OS=Syncephalastrum racemosum GN=SPSR PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.405e-21
Identity = 64/198 (32.32%), Postives = 100/198 (50.51%), Query Frame = 1
Query:  274 NAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSG-AVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSIS-VNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYW-EVDLDAITFGKES 858
            + +Y++ +++G P Q  K+  DTGSS+LW  S+ C S                    G  + I YG G +  G  + D V++G +KI  Q    AT+E   +F+ G  DGILGLG+D+IS V     P  ++I Q+L+ +P+F  +L   ++     E +FGG N DH  G LT + +     W  V +  +  G +S
Sbjct:   86 DVEYYATVSVGTPAQSIKLDFDTGSSDLWFSSTLCTSCG---SKSFDPTKSSTYKKVGKSWQISYGDGSSASGITATDNVELGGLKITGQTIELATRESS-SFSSGAIDGILGLGFDTISTVAGTKTPVDNLISQNLISKPIFGVWLGKQSE-GGGGEYVFGGYNTDHIDGSLTTVKVDNSQGWYGVTVSGLKVGSKS 278          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: ASP6_CAEEL (Aspartic protease 6 OS=Caenorhabditis elegans GN=asp-6 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.514e-21
Identity = 68/221 (30.77%), Postives = 100/221 (45.25%), Query Frame = 1
Query:  217 KETSMHAEAGHPVAVSNFLNAQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGAVEGYISQDTVQIG-----DIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIF--GGINKDHYTGELTKLPLRRKAYWEVDLDAITFGKES 858
            +  S +  A  P  V++F + +Y   I IG P Q F VVLDTGSSNLWIP   C    C                 G  + I+YGSG   G + QDTV+ G      + +    FG A+ +    F     DGILGL + S++V+ + PP  + I+Q +LD+P+F+ +L            +F  G I+  +    +   PL    Y++        G  S
Sbjct:   49 RAVSPNVLANLPQNVNDFGDFEYLGNITIGTPDQGFIVVLDTGSSNLWIPGPTC-KTNCKTKSKFDSTASSTFVKNGKSWTIQYGSGDAAGILGQDTVRFGAKGDSQLSVPTTTFGIAS-KISADFKNDATDGILGLAFTSLAVDGVVPPLINAINQGILDQPLFSVWLEHRGAANNVGGGVFTYGAIDTTNCGALVAYQPLSSATYYQFKAAGFKLGSYS 267          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CARP5_RHINI (Rhizopuspepsin-5 OS=Rhizopus niveus PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.417e-19
Identity = 65/211 (30.81%), Postives = 100/211 (47.39%), Query Frame = 1
Query:  196 KHADEMFKETSMHAEAGHPVAVSNFLN-AQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSG-AVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSI-SVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYW 819
            +H        S   +    V V+++ N  +YF ++ +G P    K+  DTGSS+LW  SS C +   Y                G  ++I YG G +  G +  DTV +G + I+ Q    A +E   +F  G  DG+LGLG++SI +V  +  P  ++I Q L+  PVF  YL   ++     E IFGG +   + G LT +P+     W
Sbjct:   55 RHRSTSSSSNSTSTDGIGRVPVTDYYNDIEYFGQVKVGTPGVTLKLDFDTGSSDLWFASSLCTNCG-YSQTKYNPNQSRTYAKDGRAWSISYGDGSSASGILGTDTVVLGGLTIQRQTIELARREAS-SFQNGPSDGLLGLGFNSITTVRGVKTPVDNLISQGLISNPVFGVYLGKESN-GGGGEYIFGGYDSSKFKGSLTTIPVDNSNGW 262          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CARP3_RHINI (Rhizopuspepsin-3 OS=Rhizopus niveus PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.157e-19
Identity = 65/195 (33.33%), Postives = 97/195 (49.74%), Query Frame = 1
Query:  253 VAVSNFLN-AQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSS---DCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSG-AVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSI-SVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYW 819
            V V+++ N  +Y+ E+ +G P    K+  DTGSS+LW  SS   +CGS                    G  ++I YG G +  G +  DTV +G + I++Q    A +E    F  G  DG+LGLG+DSI +V  +  P  ++I Q L+  PVF  YL   ++     E IFGG +   + G LT +P+     W
Sbjct:   73 VPVTDYYNDIEYYGEVTVGTPGVTLKLDFDTGSSDLWFASSLCTNCGS----SQTKYNPNESSTYARDGRTWSISYGDGSSASGILGTDTVILGGLTIRHQTIELARREAS-QFQSGPSDGLLGLGFDSITTVRGVKTPVDNLISQGLISNPVFGVYLGKESN-GGGGEYIFGGYDSSKFKGSLTTIPVDNSNGW 261          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CARP1_RHINI (Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.385e-19
Identity = 63/208 (30.29%), Postives = 104/208 (50.00%), Query Frame = 1
Query:  238 EAGHPVAVSNFLN-AQYFSEIAIGNPPQEFKVVLDTGSSNLWIPSSDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSG-AVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSI-SVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPL-RRKAYWEVDLDAITFG 849
            EA   V + ++ N  +Y+ E+ +G P  + K+  DTGSS++W  S+ C S +                  G  ++I YG G +  G ++ D V +G + IK Q    A +E   AFA    DG+LGLG+++I +V  +  P  ++I Q L+  P+F  YL   ++     E IFGG +   + G LT +P+   + +W V + +   G
Sbjct:   66 EASGSVPMVDYENDVEYYGEVTVGTPGIKLKLDFDTGSSDMWFASTLCSSCS-NSHTKYDPKKSSTYAADGRTWSISYGDGSSASGILATDNVNLGGLLIKKQTIELAKRESS-AFATDVIDGLLGLGFNTITTVRGVKTPVDNLISQGLISRPIFGVYLGKQSN-GGGGEYIFGGYDSSKFKGSLTTVPIDNSEGFWGVTVKSTKIG 270          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CARP2_RHINI (Rhizopuspepsin-2 OS=Rhizopus niveus PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.200e-18
Identity = 63/204 (30.88%), Postives = 99/204 (48.53%), Query Frame = 1
Query:  226 SMHAEAGHPVAVSNFLN-AQYFSEIAIGNPPQEFKVVLDTGSSNLWIPS---SDCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSG-AVEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSI-SVNKIPPPFYSMIDQDLLDEPVFAFYLSDTNDKEAESEAIFGGINKDHYTGELTKLPLRRKAYW 819
            S   E    V V+++ N  +Y+ ++ +G P    K+  DTGSS+LW  S   ++CGS                    G  ++I YG G +  G +  DTV +G +KI  Q   E  +    +F  G   G+LGLG+D+I +V  +  P  ++I Q L+ +P+F  YL   ++     E IFGG +   Y+G LT +P+     W
Sbjct:   64 STSTEGTGSVPVTDYYNDIEYYGKVTVGTPGVTLKLDFDTGSSDLWFASTLCTNCGS----SQTKYNPNQSSTYAKDGRTWSISYGDGSSASGILGTDTVTLGGLKITKQTI-ELAKREATSFQSGPSYGLLGLGFDTITTVRGVKTPVDNLISQGLISKPIFGVYLGKESN-GGGGEYIFGGYDSSKYSGSLTTIPVDNSNGW 261          
BLAST of FC878299 vs. ExPASy Swiss-Prot
Match: CARP6_CANAL (Candidapepsin-6 OS=Candida albicans GN=SAP6 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.621e-15
Identity = 61/200 (30.50%), Postives = 95/200 (47.50%), Query Frame = 1
Query:  283 YFSEIAIGNPPQEFKVVLDTGSSNLWIPSS----------DCGSIACYLXXXXXXXXXXXXXXXGSDFAIRYGSGA-VEGYISQDTVQIGDIKIKNQLFGEATQEPGLAFAFGRFDGILGLGYDSISVNKIPPPF--YSMIDQDLLDEPVFAFYLSDTNDKEAES-EAIFGGINKDHYTGELTKLPLRRKAYWEVDLDAI 840
            Y ++I +G+  Q+  V++DTGSS+LWIP S          DCG   C                  + F I+Y  G+  +G + QDTV IG   +KNQLF          ++     GILG+G+ +    + P      S+  Q ++ +  ++ +L   N  EA S + IFGGI+K  Y+G L +LP+       V L ++
Sbjct:   90 YSADITVGSNNQKLSVIVDTGSSDLWIPDSKAICIPKWRGDCGDF-CKNNGSYSPAASSTSKNLNTRFEIKYADGSYAKGNLYQDTVGIGGASVKNQLFAN-------VWSTSAHKGILGIGFQTNEATRTPYDNLPISLKKQGIIAKNAYSLFL---NSPEASSGQIIFGGIDKAKYSGSLVELPITSDRTLSVGLRSV 278          
The following BLAST results are available for this feature:
BLAST of FC878299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
CARDG_CYNCA4.706e-2333.66Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARP4_RHINI3.984e-2231.15Rhizopuspepsin-4 OS=Rhizopus niveus PE=3 SV=1[more]
CARP_RHICH1.977e-2131.82Rhizopuspepsin OS=Rhizopus chinensis PE=1 SV=2[more]
CARP_SYNRA4.405e-2132.32Syncephapepsin OS=Syncephalastrum racemosum GN=SPS... [more]
ASP6_CAEEL7.514e-2130.77Aspartic protease 6 OS=Caenorhabditis elegans GN=a... [more]
CARP5_RHINI2.417e-1930.81Rhizopuspepsin-5 OS=Rhizopus niveus PE=3 SV=2[more]
CARP3_RHINI3.157e-1933.33Rhizopuspepsin-3 OS=Rhizopus niveus PE=3 SV=1[more]
CARP1_RHINI5.385e-1930.29Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 S... [more]
CARP2_RHINI1.200e-1830.88Rhizopuspepsin-2 OS=Rhizopus niveus PE=3 SV=2[more]
CARP6_CANAL1.621e-1530.50Candidapepsin-6 OS=Candida albicans GN=SAP6 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA12AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878299 ID=FC878299; Name=FC878299; organism=Citrus clementina; type=EST; length=867bp
ACACATCCCCCACACAGAAACAACAAGATGAAGGGCAGTTCTCTCATGGC
AGCCGGTGCGCTGTTTGGCTCGGCTTCGGCTGGTGTCCACAAGATGAAGC
TCAAGAAGGTTCCTCTCTCGGAGCAGCTTGAGGGCGCAAACATTGGCGAG
CACATGCAGGCTCTCGGCCAGAAGTACATGGGTGTTCGCCCCCAGAAGCA
CGCCGACGAGATGTTCAAGGAGACCTCCATGCACGCTGAGGCCGGCCACC
CCGTCGCTGTCAGCAACTTTCTGAACGCTCAGTACTTCTCCGAGATTGCC
ATCGGCAACCCTCCCCAGGAGTTCAAGGTCGTCCTCGACACTGGTAGCTC
CAACCTGTGGATCCCCTCGTCTGACTGTGGTTCCATCGCTTGCTATCTCC
ACAACAAGTACGACCACAGCGACTCTTCGTCGTACAAGAAGAACGGCTCC
GACTTTGCCATCCGCTACGGCTCGGGTGCTGTTGAGGGTTACATCTCTCA
GGACACTGTCCAGATTGGTGACATCAAGATCAAGAACCAGCTCTTCGGTG
AGGCCACTCAGGAGCCTGGCTTGGCTTTCGCCTTTGGCCGCTTCGACGGT
ATCCTCGGTCTTGGATACGACTCCATCAGTGTCAACAAGATCCCCCCTCC
TTTCTACTCAATGATTGACCAGGACCTGCTCGACGAGCCTGTCTTCGCCT
TCTACCTCAGCGACACCAACGACAAGGAGGCTGAGTCCGAGGCCATCTTC
GGTGGTATCAACAAGGACCACTACACCGGCGAGCTCACCAAGCTCCCTCT
GAGACGCAAGGCCTACTGGGAGGTTGACCTTGACGCCATCACCTTCGGCA
AGGAGAGTGCCGAGTTC
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