FC878302

Overview
NameFC878302
Unique NameFC878302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.506e-11
Identity = 41/112 (36.61%), Postives = 56/112 (50.00%), Query Frame = 1
Query:  403 FTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSW 738
            FT+  L+  TN F+   ++G G  G VYR +L +G  + VKKL        K  EF   V  I  +RH N+V L GYC      +L+ EY ++G L   LH       NL+W
Sbjct:  171 FTLRDLELATNRFAPVNVLGEGGYGVVYRGKLVNGTEVAVKKLLNNLGQAEK--EFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNSGNLEQWLHGAMRQHGNLTW 280          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: RKF3_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana GN=RKF3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.506e-11
Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  388 TTARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA-----*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSW 738
            TT   F+   +++ TN+FS+  +IG G  G+V++  LPDG  +  K+   +  S   D  F   V  I  IRH N++ L+GYC         Q +++ +  SNG+LHD L  D  L+  L+W
Sbjct:  266 TTLVKFSFDEIKKATNNFSRHNIIGRGGYGNVFKGALPDGTQVAFKRF--KNCSAGGDANFAHEVEVIASIRHVNLLALRGYCTATTPYEGHQRIIVCDLVSNGSLHDHLFGD--LEAQLAW 383          
BLAST of FC878302 vs. ExPASy Swiss-Prot
Match: WAKLJ_ARATH (Wall-associated receptor kinase-like 10 OS=Arabidopsis thaliana GN=WAKL10 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 40/124 (32.26%), Postives = 63/124 (50.81%), Query Frame = 1
Query:  367 TKTAKPFTTARSFTIASLQQYTNSFSQEYLIGAGMLGSVYRAQLPDGKLLTVKKLDKRASSQHKDDEFLELVNNIDRIRHANIVGLKGYCA*HGQWLLI*EYCSNGTLHDMLHSDDELKNNLSW 738
            T T     + R F    L++ T +FS   ++G G  G+VY+  L DG+++ VKK   +   + K +EF+  V  + +I H NIV L G C      +L+ E+  NG L + LH D +     +W
Sbjct:  409 TTTEGNVDSTRVFNSRELEKATENFSLTRILGEGGQGTVYKGMLVDGRIVAVKK--SKVVDEDKLEEFINEVVILSQINHRNIVKLLGCCLETDVPILVYEFIPNGNLFEHLHDDSDDYTMTTW 530          
The following BLAST results are available for this feature:
BLAST of FC878302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
Y2296_ARATH5.506e-1136.61Probable receptor-like protein kinase At2g42960 OS... [more]
RKF3_ARATH5.506e-1134.43Probable LRR receptor-like serine/threonine-protei... [more]
WAKLJ_ARATH9.392e-1132.26Wall-associated receptor kinase-like 10 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA24CD05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA24CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878302 ID=FC878302; Name=FC878302; organism=Citrus clementina; type=EST; length=745bp
TGCATTTAGAGGCAACAACAGAGAGGAAGCCAGGGACATGGGACCTTGGC
CCTTCCAACCAATCAAATGGAGAAAGATGCATCTGTGAAGCCGAAGGAGG
ATCATCGATCAGAGATGAGAAGAATGGGAGCCATTCCACATGCACAGAAT
GAACAAGAGAGAAATAAACAAAGGATGAGCACAATACCTAGACGGGATGA
TCATGAGATAGACATGAGTTCACTAGATATGATGATGATGCCACCACCAC
CTCCTCCTCCCCCACCTCCACCTCCACCTCCTCCACCACCTCCTCCACCG
CCTGTTGTAGAGAAGGTCATTGTAAAGCCAATTGTGCCCGCTGAAGGAAC
TGCTGTGAAGACTTCCACTAAAACTGCAAAACCTTTCACAACTGCAAGGT
CTTTCACCATTGCATCCCTTCAACAATATACTAACAGCTTTTCTCAAGAA
TACCTTATAGGTGCTGGTATGCTGGGGAGTGTTTATAGGGCACAGCTTCC
TGATGGAAAGCTACTAACAGTCAAGAAACTGGACAAGAGGGCTTCAAGTC
AGCATAAGGATGATGAATTTCTTGAACTGGTGAACAATATTGATCGAATT
CGACATGCTAATATAGTCGGGCTCAAGGGTTACTGTGCATAGCATGGACA
ATGGCTTCTTATATAGGAGTATTGCAGTAACGGAACTCTGCATGATATGC
TACATTCAGATGATGAATTAAAAAATAATCTATCGTGGAACACCC
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