FC878354

Overview
NameFC878354
Unique NameFC878354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGAP3_MOUSE (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Mus musculus GN=Agap3 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.203e-23
Identity = 58/130 (44.62%), Postives = 72/130 (55.38%), Query Frame = 1
Query:  463 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            +  +R V GN  C DC AP PDWASLNLG L+CIECSG+HR+LG H+S+VRSL LD   W P ++ +  ++GNA ANSVWE  L   S                       KP        KE++I AKY
Sbjct:  664 VQAVRTVRGNSLCIDCEAPNPDWASLNLGALMCIECSGIHRHLGAHLSRVRSLDLD--DWPPELLAVMTAMGNALANSVWEGALDGYS-----------------------KPGPEACREEKERWIRAKY 768          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ACAP2_HUMAN (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=ACAP2 PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 1.203e-23
Identity = 69/206 (33.50%), Postives = 98/206 (47.57%), Query Frame = 1
Query:   88 NLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWE 705
            +L   T+K   +  + RFCF ++SPTK+  LQA+S   +  WI+ +   IA+    +  E                                +   S  +L S                +K E  +  ++ + GN  C DCG  +P WAS+NLG+ +CIECSG+HR+LGVH SKVRSLTLD   WEP ++ L   LGN   N V+E
Sbjct:  312 DLRLCTVK-HCEDIERRFCFEVVSPTKSCMLQADSEKLRQAWIKAVQTSIATAYREKGDES--------------------------EKLDKKSSPSTGSLDSGNESKEKL--------LKGESALQRVQCIPGNASCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLD--TWEPELLKLMCELGNDVINRVYE 480          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ACAP1_BOVIN (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 OS=Bos taurus GN=ACAP1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.203e-23
Identity = 79/261 (30.27%), Postives = 121/261 (46.36%), Query Frame = 1
Query:   88 NLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDV------LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            +L   T+K+  D S+ RFCF ++SP+K+  LQ++S      W+      + S +++   +  L  SP                        + + +    ++SA                +  +P  V      ++ V GN +C DC  P P+WAS+NLGV +CI+CSG+HR+LGVH SKVRSLTLD   WEP ++ L   LGN   N ++E  +++                     + + KP  S S   KE +IHAKY
Sbjct:  311 DLRLCTVKLCPD-SERRFCFEVVSPSKSCLLQSDSERLMQLWVS----AVQSSIATAFSQARLDDSPRG----------------------LGQGSGHLAISSA-------ATLGPGGLTRGREPGGVGHVAAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPELVKLMCELGNVVINQIYEARVEA---------------------MAVKKPGPSCSRQEKEAWIHAKY 514          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGAP3_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.052e-23
Identity = 58/130 (44.62%), Postives = 72/130 (55.38%), Query Frame = 1
Query:  463 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            +  +R V GN  C DC AP PDWASLNLG L+CIECSG+HR+LG H+S+VRSL LD   W P ++ +  ++GNA ANSVWE  L   S                       KP        KE++I AKY
Sbjct:  629 VQAVRTVRGNSFCIDCDAPNPDWASLNLGALMCIECSGIHRHLGAHLSRVRSLDLD--DWPPELLAVMTAMGNALANSVWEGALGGYS-----------------------KPGPDACREEKERWIRAKY 733          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: CEG1A_DROME (Centaurin-gamma-1A OS=Drosophila melanogaster GN=cenG1A PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.679e-23
Identity = 59/128 (46.09%), Postives = 75/128 (58.59%), Query Frame = 1
Query:  469 VLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            + +RV GN  C DCGAP P+WASLNLGVL+CIECSGVHRNLG HISKVRSL LD   W    +++  ++GN+ ANSVWE   + R                        KP+   S   KE+++ +KY
Sbjct:  707 IRQRVPGNGFCVDCGAPNPEWASLNLGVLMCIECSGVHRNLGSHISKVRSLGLD--DWPSPHLSVMLAIGNSLANSVWESNTRQRV-----------------------KPTSQASREDKERWVRSKY 809          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ACAP1_HUMAN (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ACAP1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.499e-23
Identity = 79/261 (30.27%), Postives = 115/261 (44.06%), Query Frame = 1
Query:   88 NLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDV------LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            +L   T+K+  D S+ RFCF ++S +K+  LQA+S      W+      + S ++S   +  L  SP                                   S +               +  +P  V      ++ V GN +C DC  P P+WAS+NLGV +CI+CSG+HR+LGVH SKVRSLTLD   WEP ++ L   LGN   N ++E  +++                     + + KP  S S   KE +IHAKY
Sbjct:  311 DLRLCTVKLCPD-SERRFCFEVVSTSKSCLLQADSERLLQLWVS----AVQSSIASAFSQARLDDSPRGPGQG-----------------------------SGHLAIGSAATLGSGGMARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPELVKLMCELGNVIINQIYEARVEA---------------------MAVKKPGPSCSRQEKEAWIHAKY 514          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGAP1_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=AGAP1 PE=1 SV=4)

HSP 1 Score: 108.227 bits (269), Expect = 5.969e-23
Identity = 57/127 (44.88%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            +R + GN  C DC    P+WASLNLG L+CIECSG+HRNLG H+S+VRSL LD   W   +I +  S+GN  ANSVWEE  Q R+                       KPS   +   KE++I AKY
Sbjct:  615 IRNMRGNSHCVDCETQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLDD--WPVELIKVMSSIGNELANSVWEESSQGRT-----------------------KPSVDSTREEKERWIRAKY 716          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGAP1_XENLA (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Xenopus laevis GN=agap1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.796e-23
Identity = 58/127 (45.67%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            +R + GN  C DC A  PDWASLNLG L+CIECSG+HRNLG H+S+VRSL LD   W P +I +  ++GN  ANSVWE      S  HV                   KP        KE++I AKY
Sbjct:  618 IRNLPGNSHCVDCDAQSPDWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLD--DWPPELIKVMSAIGNELANSVWE----GSSQGHV-------------------KPCSESPREEKERWIRAKY 719          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGAP1_MOUSE (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Mus musculus GN=Agap1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.796e-23
Identity = 57/127 (44.88%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            +R + GN  C DC    P+WASLNLG L+CIECSG+HRNLG H+S+VRSL LD   W   +I +  S+GN  ANSVWEE  Q R+                       KPS   +   KE++I AKY
Sbjct:  615 IRNMRGNSHCVDCDTQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLD--DWPMELIKVMSSIGNELANSVWEEGSQGRT-----------------------KPSLDSTREEKERWIRAKY 716          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGAP2_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.962e-22
Identity = 56/130 (43.08%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  463 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            I  +R   GN  C DCGAP P WASLNLG L+CIECSG+HRNLG H+S+VRSL LD   W   +  +  ++GN  AN VWE   + R+                       KPS   S   +E +I AKY
Sbjct:  934 IQAIRNAKGNSICVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLD--DWPRELTLVLTAIGNDTANRVWESDTRGRA-----------------------KPSRDSSREERESWIRAKY 1038          
The following BLAST results are available for this feature:
BLAST of FC878354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
AGAP3_MOUSE1.203e-2344.62Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
ACAP2_HUMAN1.203e-2333.50Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
ACAP1_BOVIN1.203e-2330.27Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
AGAP3_HUMAN2.052e-2344.62Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
CEG1A_DROME2.679e-2346.09Centaurin-gamma-1A OS=Drosophila melanogaster GN=c... [more]
ACAP1_HUMAN3.499e-2330.27Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
AGAP1_HUMAN5.969e-2344.88Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP1_XENLA7.796e-2345.67Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP1_MOUSE7.796e-2344.88Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP2_HUMAN2.962e-2243.08Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA58BH12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878354 ID=FC878354; Name=FC878354; organism=Citrus clementina; type=EST; length=852bp
CTTGGTTCTGGACTGTTGAGTCGGTGGCTCTCTTCTCATTATCATGGTGG
AGTACATGATGAAAAATCTGCTGCTCGTCATACAGTGAACTTGCTTACAT
CAACAATCAAAGTTGATGCTGACCAATCAGACCTGAGGTTTTGTTTCAGA
ATCATTTCCCCTACAAAAAACTATACTTTGCAGGCAGAGAGTGCTCTGGA
TCAGATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTTA
GTTCTCAGGCTCCTGAGAGGTGTCTGCCTACTAGTCCTATGGGAAGTGGC
CATCATCGATCAGCTAGTGACAGTAGTTCATTTGAAAGTTCTGACTTTGA
TCATGCTGCCGTTGAAGAATATACATCTGAGAGGAATCTTACAAGTGCAT
ATCATGAACGTCAATCGAGAGGTTCACAACAGCAGCGCTCATGTGTAAAA
AGTGAGAAGCCAATTGATGTGCTGCGAAGAGTATGTGGGAATGATAGATG
TGCTGATTGTGGGGCACCTGAACCTGATTGGGCGTCTTTAAACCTTGGTG
TTCTTGTTTGTATCGAATGCTCTGGTGTCCACCGAAATCTTGGTGTGCAC
ATATCAAAGGTCAGGTCACTAACCCTTGATGTAAAAGTATGGGAGCCATC
TGTTATAACTCTGTTTCAGTCTCTGGGCAATGCTTTTGCAAACTCAGTCT
GGGAGGAATTATTGCAATCAAGAAGTGCCTTTCATGTTGATCTTACTCCC
CCAAGCTTGCACAAGTCTGATAAACCACAGTTGCTTCTTATGGGCAAACC
TAGTCACTCTGATTCTATATCAGTGAAGGAAAAGTTCATCCATGCAAAGT
AT
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