FC878354

Overview
NameFC878354
Unique NameFC878354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGAP2_RAT (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Rattus norvegicus GN=Agap2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.869e-22
Identity = 55/130 (42.31%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  463 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            I  +R   GN  C DCGAP P WASLNLG L+CIECSG+HRNLG H+S+VRSL LD   W   +  +  ++GN  AN VWE   + R+                       KP+   S   +E +I AKY
Sbjct:  928 IQAIRNAKGNSTCVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLD--DWPRELTLVLTAIGNDTANRVWESDTRGRA-----------------------KPTRDSSREERESWIRAKY 1032          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGAP2_MOUSE (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Agap2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.869e-22
Identity = 55/130 (42.31%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  463 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            I  +R   GN  C DCGAP P WASLNLG L+CIECSG+HRNLG H+S+VRSL LD   W   +  +  ++GN  AN VWE   + R+                       KP+   S   +E +I AKY
Sbjct:  928 IQAIRNAKGNSTCVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLD--DWPRELTLVLTAIGNDTANRVWESDTRGRA-----------------------KPTRDSSREERESWIRAKY 1032          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARAP3_HUMAN (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=ARAP3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.797e-19
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  490 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTP 750
            N +CADCG+  PDWA++NLGV++C +C+G HR LG  ISKV+SL LD  VW   ++ LF  LGN  AN  W   L      H D TP
Sbjct:  501 NRQCADCGSSRPDWAAVNLGVVICKQCAGQHRALGSGISKVQSLKLDTSVWSNEIVQLFIVLGNDRANRFWAGTLPPGEGLHPDATP 587          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ASAP2_HUMAN (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=ASAP2 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 3.066e-19
Identity = 69/256 (26.95%), Postives = 109/256 (42.58%), Query Frame = 1
Query:   85 VNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            +NLLT  +K + ++     CF +IS  + Y  QAE   +   W+  +       L++                                    ++ T E N+                    +++ I  ++R+ GND C DCGAP+P W S NLG+L CIECSG+HR LGVH S+++SLTLD  V   S + L +++GNA  N + E  L +  +                      KP+    ++ ++ +I AKY
Sbjct:  349 LNLLTCQVKTNPEEKK---CFDLISHDRTYHFQAEDEQECQIWMSVLQNSKEEALNNAFKG--------------------------------DDNTGENNIVQEL----------------TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLD--VLGTSELLLAKNIGNAGFNEIMECCLPAEDSV---------------------KPNPGSDMNARKDYITAKY 530          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ASAP2_MOUSE (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Asap2 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 4.004e-19
Identity = 64/212 (30.19%), Postives = 96/212 (45.28%), Query Frame = 1
Query:   85 VNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQS 720
            +NLLT  +K + ++     CF +IS  + Y  QAE   +   W+  +       L++                                    ++ T E N+                    +++ I  ++R+ GND C DCGAP+P W S NLG+L CIECSG+HR LGVH S+++SLTLD  V   S + L +++GNA  N + E  L S
Sbjct:  352 LNLLTCQVKTNPEEKK---CFDLISHDRTYHFQAEDEQECQIWMSVLQNSKEEALNNAFKG--------------------------------DDNTGENNIVQEL----------------TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLD--VLGTSELLLAKNIGNAGFNEIMECCLPS 510          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ASAP1_RAT (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 OS=Rattus norvegicus GN=Asap1 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.830e-19
Identity = 73/256 (28.52%), Postives = 107/256 (41.80%), Query Frame = 1
Query:   85 VNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            +NLLT  +K +A+       F +IS  + Y  QAE   D + WI  +T                                                + E  LT A+               K+   I+ ++R+ GND C DCG+ EP W S NLG+L CIECSG+HR +GVHIS+++SL LD      S + L +++GN   N + E  L S S                       KP+ S  ++V++++I AKY
Sbjct:  380 LNLLTCQVKPNAEDKK---SFDLISHNRTYHFQAEDEQDYVAWISVLTN-----------------------------------------------SKEEALTMAFRGEQSTGENSLEDLTKAI--IEDVQRLPGNDICCDCGSSEPTWLSTNLGILTCIECSGIHREMGVHISRIQSLELD--KLGTSELLLAKNVGNNSFNDIMEANLPSPSP----------------------KPTPSSDMTVRKEYITAKY 559          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ASAP1_MOUSE (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 OS=Mus musculus GN=Asap1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.830e-19
Identity = 73/256 (28.52%), Postives = 107/256 (41.80%), Query Frame = 1
Query:   85 VNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            +NLLT  +K +A+       F +IS  + Y  QAE   D + WI  +T                                                + E  LT A+               K+   I+ ++R+ GND C DCG+ EP W S NLG+L CIECSG+HR +GVHIS+++SL LD      S + L +++GN   N + E  L S S                       KP+ S  ++V++++I AKY
Sbjct:  383 LNLLTCQVKPNAEDKK---SFDLISHNRTYHFQAEDEQDYIAWISVLTN-----------------------------------------------SKEEALTMAFRGEQSTGENSLEDLTKAI--IEDVQRLPGNDICCDCGSSEPTWLSTNLGILTCIECSGIHREMGVHISRIQSLELD--KLGTSELLLAKNVGNNSFNDIMEANLPSPSP----------------------KPTPSSDMTVRKEYITAKY 562          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ASAP1_HUMAN (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ASAP1 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 6.830e-19
Identity = 73/256 (28.52%), Postives = 107/256 (41.80%), Query Frame = 1
Query:   85 VNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            +NLLT  +K +A+       F +IS  + Y  QAE   D + WI  +T                                                + E  LT A+               K+   I+ ++R+ GND C DCG+ EP W S NLG+L CIECSG+HR +GVHIS+++SL LD      S + L +++GN   N + E  L S S                       KP+ S  ++V++++I AKY
Sbjct:  368 LNLLTCQVKPNAEDKK---SFDLISHNRTYHFQAEDEQDYVAWISVLTN-----------------------------------------------SKEEALTMAFRGEQSAGENSLEDLTKAI--IEDVQRLPGNDICCDCGSSEPTWLSTNLGILTCIECSGIHREMGVHISRIQSLELD--KLGTSELLLAKNVGNNSFNDIMEANLPSPSP----------------------KPTPSSDMTVRKEYITAKY 547          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ASAP1_BOVIN (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 OS=Bos taurus GN=ASAP1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.830e-19
Identity = 73/256 (28.52%), Postives = 107/256 (41.80%), Query Frame = 1
Query:   85 VNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            +NLLT  +K +A+       F +IS  + Y  QAE   D + WI  +T                                                + E  LT A+               K+   I+ ++R+ GND C DCG+ EP W S NLG+L CIECSG+HR +GVHIS+++SL LD      S + L +++GN   N + E  L S S                       KP+ S  ++V++++I AKY
Sbjct:  371 LNLLTCQVKPNAEDKK---SFDLISHNRTYHFQAEDEQDYVAWISVLTN-----------------------------------------------SKEEALTMAFRGEQSAGESSLEELTKAI--IEDVQRLPGNDVCCDCGSAEPTWLSTNLGILTCIECSGIHREMGVHISRIQSLELD--KLGTSELLLAKNVGNNSFNDIMEANLPSPSP----------------------KPTPSSDMTVRKEYITAKY 550          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGD5_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.830e-19
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  490 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWE 705
            N  CADC    P WAS+NLG+ +C++CSG+HR+LGVHISKVRS TLD   W P  +   QS+GN  ANS WE
Sbjct:   28 NRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLD--TWLPEQVAFIQSMGNDKANSYWE 97          
The following BLAST results are available for this feature:
BLAST of FC878354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
AGAP2_RAT3.869e-2242.31Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP2_MOUSE3.869e-2242.31Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
ARAP3_HUMAN1.797e-1950.57Arf-GAP with Rho-GAP domain, ANK repeat and PH dom... [more]
ASAP2_HUMAN3.066e-1926.95Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
ASAP2_MOUSE4.004e-1930.19Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
ASAP1_RAT6.830e-1928.52Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
ASAP1_MOUSE6.830e-1928.52Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
ASAP1_HUMAN6.830e-1928.52Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
ASAP1_BOVIN6.830e-1928.52Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
AGD5_ARATH6.830e-1958.33Probable ADP-ribosylation factor GTPase-activating... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA58BH12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878354 ID=FC878354; Name=FC878354; organism=Citrus clementina; type=EST; length=852bp
CTTGGTTCTGGACTGTTGAGTCGGTGGCTCTCTTCTCATTATCATGGTGG
AGTACATGATGAAAAATCTGCTGCTCGTCATACAGTGAACTTGCTTACAT
CAACAATCAAAGTTGATGCTGACCAATCAGACCTGAGGTTTTGTTTCAGA
ATCATTTCCCCTACAAAAAACTATACTTTGCAGGCAGAGAGTGCTCTGGA
TCAGATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTTA
GTTCTCAGGCTCCTGAGAGGTGTCTGCCTACTAGTCCTATGGGAAGTGGC
CATCATCGATCAGCTAGTGACAGTAGTTCATTTGAAAGTTCTGACTTTGA
TCATGCTGCCGTTGAAGAATATACATCTGAGAGGAATCTTACAAGTGCAT
ATCATGAACGTCAATCGAGAGGTTCACAACAGCAGCGCTCATGTGTAAAA
AGTGAGAAGCCAATTGATGTGCTGCGAAGAGTATGTGGGAATGATAGATG
TGCTGATTGTGGGGCACCTGAACCTGATTGGGCGTCTTTAAACCTTGGTG
TTCTTGTTTGTATCGAATGCTCTGGTGTCCACCGAAATCTTGGTGTGCAC
ATATCAAAGGTCAGGTCACTAACCCTTGATGTAAAAGTATGGGAGCCATC
TGTTATAACTCTGTTTCAGTCTCTGGGCAATGCTTTTGCAAACTCAGTCT
GGGAGGAATTATTGCAATCAAGAAGTGCCTTTCATGTTGATCTTACTCCC
CCAAGCTTGCACAAGTCTGATAAACCACAGTTGCTTCTTATGGGCAAACC
TAGTCACTCTGATTCTATATCAGTGAAGGAAAAGTTCATCCATGCAAAGT
AT
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