FC878354

Overview
NameFC878354
Unique NameFC878354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGD15_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis thaliana GN=AGD15 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.830e-19
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  448 KSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELL 714
            K  K ++ L +   N  CADC +  P WAS+NLG+ +C++CSG+HR+LGVHIS+VRS+TLD   W P  +   +S GNA  N  WE  L
Sbjct:   14 KHSKILEALLKHPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSITLD--TWLPDQVAFMKSTGNAKGNEYWESEL 100          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGAP7_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 7 OS=Homo sapiens GN=AGAP7 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.920e-19
Identity = 50/127 (39.37%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            ++ + GN  C DC    P WASLNLGVL+CIECSG+HR+LG  +S+VRSL LD   W   +  +  S+GN  ANS+WE   Q R+                       KP+   +   KE++I +KY
Sbjct:  447 IQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELD--DWPVELRKVMSSIGNDLANSIWEGSSQGRT-----------------------KPTEKSTREEKERWIRSKY 548          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARAP1_HUMAN (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ARAP1 PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.165e-18
Identity = 43/87 (49.43%), Postives = 54/87 (62.07%), Query Frame = 1
Query:  490 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTP 750
            N  CADCGAP+PDWAS+NL V++C  C+G HR LG  +SKVRSL +D KVW  ++I LF  LGN   N  W   +    A     +P
Sbjct:  547 NRFCADCGAPQPDWASINLCVVICKRCAGEHRGLGAGVSKVRSLKMDRKVWTETLIELFLQLGNGAGNRFWAANVPPSEALQPSSSP 633          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGAP4_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 4 OS=Homo sapiens GN=AGAP4 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.165e-18
Identity = 50/127 (39.37%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            ++ + GN  C DC    P WASLNLGVL+CIECSG+HR+LG  +S+VRSL LD   W   +  +  S+GN  ANS+WE   Q ++                       KPS   +   KE++I +KY
Sbjct:  447 IQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELD--DWPVELRKVMSSIGNDLANSIWEGSSQGQT-----------------------KPSEKSTREEKERWIRSKY 548          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGA11_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 11 OS=Homo sapiens GN=AGAP11 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.521e-18
Identity = 50/127 (39.37%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            ++ + GN  C DC    P WASLNLGVL+CIECSG+HR+LG  +S+VRSL LD   W   +  +  S+GN  ANS+WE   Q ++                       KPS   +   KE++I +KY
Sbjct:  334 IQNMRGNSHCVDCETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELD--DWPVELRKVMSSIGNDLANSIWEGSSQGQT-----------------------KPSIESTREEKERWIRSKY 435          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ASAP3_MOUSE (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 OS=Mus musculus GN=Asap3 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.595e-18
Identity = 52/122 (42.62%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  487 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            GNDRC DCGA +P W S NLGVL CI+CSGVHR LGV  S+++SLTLD  +  PS + L  ++GN+  N V E  L S  +                      KPS    +S +  +I AKY
Sbjct:  436 GNDRCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRIQSLTLD--LLGPSELLLALNIGNSHFNEVMEAHLPSHGS---------------------PKPSAESDMSSRRNYIVAKY 534          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARAP2_HUMAN (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=ARAP2 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.595e-18
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  490 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVD 741
            N  CADC AP+PDWAS+NL V++C +C+G HR+LG   SKVRSL +D  +W   +I LF  +GN  AN  W   LQ     H+D
Sbjct:  697 NRSCADCKAPDPDWASINLCVVICKKCAGQHRSLGPKDSKVRSLKMDASIWSNELIELFIVIGNKRANDFWAGNLQKDEELHMD 780          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGAP6_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 6 OS=Homo sapiens GN=AGAP6 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.595e-18
Identity = 50/127 (39.37%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            ++ + GN  C DC    P WASLNLGVL+CIECSG+HR+LG H+S+VRSL LD   W   +  +  S+ N  ANS+WE   Q ++                       KPS   +   KE++I +KY
Sbjct:  447 IQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSLGPHLSRVRSLELD--DWPVELRKVMSSIVNDLANSIWEGSSQGQT-----------------------KPSEKSTREEKERWIRSKY 548          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARAP3_MOUSE (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 OS=Mus musculus GN=Arap3 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.427e-18
Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 1
Query:  490 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTP 750
            N  CADC A  PDWA++NLGV++C +C+G HR LG  ISKV+SL LD  VW   ++ LF  LGN  AN  W   L      H D  P
Sbjct:  496 NRHCADCRASRPDWAAVNLGVVICKQCAGQHRALGSGISKVQSLKLDTSVWSNEIVQLFIVLGNDRANCFWAGALPPGEGLHPDSAP 582          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGAP8_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 8 OS=Homo sapiens GN=AGAP8 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.427e-18
Identity = 49/127 (38.58%), Postives = 67/127 (52.76%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            ++ + GN  C DC    P WASLNLGVL+CIECSG+H +LG  +S+VRSL LD   W   +  +  S+GN  ANS+WE   Q ++                       KPS   +   KE++I +KY
Sbjct:  447 IQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHHSLGTRLSRVRSLELD--DWPVELRKVMSSIGNDLANSIWEGSSQGQT-----------------------KPSEKSTREEKERWIRSKY 548          
The following BLAST results are available for this feature:
BLAST of FC878354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
AGD15_ARATH6.830e-1948.31Probable ADP-ribosylation factor GTPase-activating... [more]
AGAP7_HUMAN8.920e-1939.37Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
ARAP1_HUMAN1.165e-1849.43Arf-GAP with Rho-GAP domain, ANK repeat and PH dom... [more]
AGAP4_HUMAN1.165e-1839.37Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGA11_HUMAN1.521e-1839.37Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
ASAP3_MOUSE2.595e-1842.62Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
ARAP2_HUMAN2.595e-1850.00Arf-GAP with Rho-GAP domain, ANK repeat and PH dom... [more]
AGAP6_HUMAN2.595e-1839.37Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
ARAP3_MOUSE4.427e-1849.43Arf-GAP with Rho-GAP domain, ANK repeat and PH dom... [more]
AGAP8_HUMAN4.427e-1838.58Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA58BH12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878354 ID=FC878354; Name=FC878354; organism=Citrus clementina; type=EST; length=852bp
CTTGGTTCTGGACTGTTGAGTCGGTGGCTCTCTTCTCATTATCATGGTGG
AGTACATGATGAAAAATCTGCTGCTCGTCATACAGTGAACTTGCTTACAT
CAACAATCAAAGTTGATGCTGACCAATCAGACCTGAGGTTTTGTTTCAGA
ATCATTTCCCCTACAAAAAACTATACTTTGCAGGCAGAGAGTGCTCTGGA
TCAGATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTTA
GTTCTCAGGCTCCTGAGAGGTGTCTGCCTACTAGTCCTATGGGAAGTGGC
CATCATCGATCAGCTAGTGACAGTAGTTCATTTGAAAGTTCTGACTTTGA
TCATGCTGCCGTTGAAGAATATACATCTGAGAGGAATCTTACAAGTGCAT
ATCATGAACGTCAATCGAGAGGTTCACAACAGCAGCGCTCATGTGTAAAA
AGTGAGAAGCCAATTGATGTGCTGCGAAGAGTATGTGGGAATGATAGATG
TGCTGATTGTGGGGCACCTGAACCTGATTGGGCGTCTTTAAACCTTGGTG
TTCTTGTTTGTATCGAATGCTCTGGTGTCCACCGAAATCTTGGTGTGCAC
ATATCAAAGGTCAGGTCACTAACCCTTGATGTAAAAGTATGGGAGCCATC
TGTTATAACTCTGTTTCAGTCTCTGGGCAATGCTTTTGCAAACTCAGTCT
GGGAGGAATTATTGCAATCAAGAAGTGCCTTTCATGTTGATCTTACTCCC
CCAAGCTTGCACAAGTCTGATAAACCACAGTTGCTTCTTATGGGCAAACC
TAGTCACTCTGATTCTATATCAGTGAAGGAAAAGTTCATCCATGCAAAGT
AT
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