FC878354

Overview
NameFC878354
Unique NameFC878354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: CTLFB_HUMAN (Putative centaurin-gamma-like family member 11P OS=Homo sapiens GN=CTGLF11P PE=5 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.197e-17
Identity = 49/127 (38.58%), Postives = 67/127 (52.76%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            ++ + GN  C DC    P WASLNLGVL+CIECSG+H +LG  +S+VRSL LD   W   +  +  S+GN  ANS+WE   Q ++                       KPS   +   KE++I +KY
Sbjct:  455 IQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHCSLGTRLSRVRSLELD--DWPVELRKVMSSIGNDLANSIWEGSSQGQT-----------------------KPSVKSTREEKERWIRSKY 556          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARAP1_MOUSE (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 OS=Mus musculus GN=Arap1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.197e-17
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  490 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTP 750
            N  CADCGA +PDWAS+NL V++C  C+G HR LG  +SKVRSL +D KVW  ++I LF  LGN   N  W   +    A     +P
Sbjct:  549 NRFCADCGAAQPDWASINLCVVICKRCAGEHRGLGAGVSKVRSLKMDRKVWTEALIQLFLHLGNGPGNHFWAANVPPSEALEPSSSP 635          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGAP9_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 OS=Homo sapiens GN=AGAP9 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.197e-17
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRS 726
            ++ + GN  C DC    P WASLNLGVL+CIECSG+HR+ G  +S+VRSL LD   W   +  +  S+GN  ANS+WE   Q ++
Sbjct:  515 IQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSFGTRLSRVRSLELD--DWPVELRKVMSSIGNELANSIWEGSSQGQT 597          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGA10_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 10 OS=Homo sapiens GN=AGAP10 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 2.197e-17
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRS 726
            ++ + GN  C DC    P WASLNLGVL+CIECSG+HR+ G  +S+VRSL LD   W   +  +  S+GN  ANS+WE   Q ++
Sbjct:  470 IQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSFGTRLSRVRSLELD--DWPVELRKVMSSIGNELANSIWEGSSQGQT 552          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: CSX2_SCHPO (Protein csx2 OS=Schizosaccharomyces pombe GN=csx2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.747e-17
Identity = 67/229 (29.26%), Postives = 104/229 (45.41%), Query Frame = 1
Query:   61 EKSAARHT--VNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIA----------SLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDR-CADCGAP-EPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWE 705
            ++S   HT  ++LL +T++  A     +FCF +I+P    T QA S  +   WIE I   I+          S+ S +   +  PTS +                       V   TS     S   E             KS   +  L+ +  +D+ CADC      +W ++N  V++CI+CSG+HR+LG HI+K+RSLTLD   + P  + L  + GN+F N ++E
Sbjct:  554 KQSLELHTEPIDLLMATVR-PAQSVSRKFCFEVITPQTKRTYQATSKAEMHSWIEAIQYSISESIVQKGKGTSMNSEETSVKHGPTSTIGKALQR-----------------VASVTSPSRHNSDSKEKKQ---------TKSPSLVKTLKEMHSSDQSCADCNTTARVEWCAINFPVVLCIDCSGIHRSLGTHITKIRSLTLD--KFNPETVDLLYATGNSFVNEIYE 753          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARAP2_MOUSE (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Arap2 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.747e-17
Identity = 41/84 (48.81%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  490 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVD 741
            N  CADC AP+PDWAS+NL V++C +C+G HR+LG    KVRSL +D  +W   +I LF  +GN  AN  W   LQ      VD
Sbjct:  695 NRSCADCKAPDPDWASINLCVVICKKCAGQHRSLGPKDCKVRSLKMDASIWSNELIELFIVIGNKRANDFWAGNLQKDEELQVD 778          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGAP5_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 5 OS=Homo sapiens GN=AGAP5 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.894e-17
Identity = 49/127 (38.58%), Postives = 67/127 (52.76%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            ++ + GN  C D     P WASLNLGVL+CIECSG+HR+LG  +S+VRSL LD   W   +  +  S+GN  ANS+WE   Q ++                       KPS   +   KE++I +KY
Sbjct:  447 IQNMRGNAHCVDYETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELD--DWPVELRKVMSSIGNDLANSIWEGSSQGQT-----------------------KPSVKSTREEKERWIRSKY 548          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGD12_ARATH (ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.424e-16
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  490 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVW-EPSVITLFQSLGNAFANSVWEELLQSRSA 729
            N  CADCGAP+P WAS N+GV +C++C GVHR+LG HISKV S+TLD   W +  V ++ +  GNA ANS++E  +   S+
Sbjct:   27 NRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLD--EWSDEEVDSMIEIGGNASANSIYEAFIPEGSS 105          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ASAP3_HUMAN (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=ASAP3 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.860e-16
Identity = 49/122 (40.16%), Postives = 62/122 (50.82%), Query Frame = 1
Query:  487 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            GN +C DCGA +P W S NLGVL CI+CSGVHR LGV  S+++SLTLD  +  PS + L  ++GN   N V E  L S                         KPS    +  +  +I AKY
Sbjct:  437 GNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD--LLGPSELLLALNMGNTSFNEVMEAQLPSHGG---------------------PKPSAESDMGTRRDYIMAKY 535          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ADAP1_HUMAN (Arf-GAP with dual PH domain-containing protein 1 OS=Homo sapiens GN=ADAP1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.143e-16
Identity = 50/130 (38.46%), Postives = 74/130 (56.92%), Query Frame = 1
Query:  463 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            +++L+R  GN RCADCGAP+PDWAS  LGV +C+ CSG+HRN+   +SKV+S+ LD   WE + +    S GN  A + +E  +            PS +           +P+ SD   ++E++I AKY
Sbjct:   10 LELLQRP-GNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLD--AWEEAQVEFMASHGNDAARARFESKV------------PSFYY----------RPTPSDCQLLREQWIRAKY 113          
The following BLAST results are available for this feature:
BLAST of FC878354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
CTLFB_HUMAN2.197e-1738.58Putative centaurin-gamma-like family member 11P OS... [more]
ARAP1_MOUSE2.197e-1748.28Arf-GAP with Rho-GAP domain, ANK repeat and PH dom... [more]
AGAP9_HUMAN2.197e-1748.24Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGA10_HUMAN2.197e-1748.24Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
CSX2_SCHPO3.747e-1729.26Protein csx2 OS=Schizosaccharomyces pombe GN=csx2 ... [more]
ARAP2_MOUSE3.747e-1748.81Arf-GAP with Rho-GAP domain, ANK repeat and PH dom... [more]
AGAP5_HUMAN4.894e-1738.58Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGD12_ARATH1.424e-1651.85ADP-ribosylation factor GTPase-activating protein ... [more]
ASAP3_HUMAN1.860e-1640.16Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
ADAP1_HUMAN4.143e-1638.46Arf-GAP with dual PH domain-containing protein 1 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA58BH12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878354 ID=FC878354; Name=FC878354; organism=Citrus clementina; type=EST; length=852bp
CTTGGTTCTGGACTGTTGAGTCGGTGGCTCTCTTCTCATTATCATGGTGG
AGTACATGATGAAAAATCTGCTGCTCGTCATACAGTGAACTTGCTTACAT
CAACAATCAAAGTTGATGCTGACCAATCAGACCTGAGGTTTTGTTTCAGA
ATCATTTCCCCTACAAAAAACTATACTTTGCAGGCAGAGAGTGCTCTGGA
TCAGATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTTA
GTTCTCAGGCTCCTGAGAGGTGTCTGCCTACTAGTCCTATGGGAAGTGGC
CATCATCGATCAGCTAGTGACAGTAGTTCATTTGAAAGTTCTGACTTTGA
TCATGCTGCCGTTGAAGAATATACATCTGAGAGGAATCTTACAAGTGCAT
ATCATGAACGTCAATCGAGAGGTTCACAACAGCAGCGCTCATGTGTAAAA
AGTGAGAAGCCAATTGATGTGCTGCGAAGAGTATGTGGGAATGATAGATG
TGCTGATTGTGGGGCACCTGAACCTGATTGGGCGTCTTTAAACCTTGGTG
TTCTTGTTTGTATCGAATGCTCTGGTGTCCACCGAAATCTTGGTGTGCAC
ATATCAAAGGTCAGGTCACTAACCCTTGATGTAAAAGTATGGGAGCCATC
TGTTATAACTCTGTTTCAGTCTCTGGGCAATGCTTTTGCAAACTCAGTCT
GGGAGGAATTATTGCAATCAAGAAGTGCCTTTCATGTTGATCTTACTCCC
CCAAGCTTGCACAAGTCTGATAAACCACAGTTGCTTCTTATGGGCAAACC
TAGTCACTCTGATTCTATATCAGTGAAGGAAAAGTTCATCCATGCAAAGT
AT
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