FC878354

Overview
NameFC878354
Unique NameFC878354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGD13_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.067e-16
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1
Query:  490 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVW-EPSVITLFQSLGNAFANSVWEELL 714
            N  CADCGA +P WAS N+GV +C++C GVHR+LG HISKV S+TLD   W +  V ++ +  GNA ANS++E  L
Sbjct:   27 NRVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLD--EWSDEEVDSMIEIGGNASANSIYEAFL 100          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: SMAP2_CHICK (Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.230e-16
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  490 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELL 714
            N  CADC A  P WAS N+GV +CI C+G+HRNLGVHIS+V+S+ LD   W    I   Q +GN  AN ++E  L
Sbjct:   25 NKYCADCQAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTQEQIQCMQEMGNGKANRLYEAFL 97          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: SMAP1_MOUSE (Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.574e-15
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  490 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWE 705
            N  CADC A  P WAS N+GV +CI C+G+HRNLGVHIS+V+S+ LD   W P  I   Q +GN  A  ++E
Sbjct:   30 NKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTPEQIQCMQDMGNTKARLLYE 99          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: GIT2_MOUSE (ARF GTPase-activating protein GIT2 OS=Mus musculus GN=Git2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.574e-15
Identity = 48/127 (37.80%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  475 RRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISV-KEKFIHAKY 852
            +R+  +D CADC  P+P WAS+N G  +C EC  VHR+LG HIS+VR   L    W P+++ + ++L N  ANS+WE         H  L P S+    +       K +  D +   K +FI AKY
Sbjct:    3 KRLRSSDVCADCNGPDPSWASVNRGTFICDECCSVHRSLGRHISQVRH--LKHTAWPPTLLQMVETLYNNGANSIWE---------HSLLDPASIMSGRR-------KANPQDKVHPNKAEFIRAKY 111          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: SMAP2_MOUSE (Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.686e-15
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  448 KSEKPIDVLRRVCGN-------DRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELL 714
            KS K +D  + V  N         CADC +  P WAS N+GV +CI C+G+HRNLGVHIS+V+S+ LD   W    I   Q +GN  AN ++E  L
Sbjct:    4 KSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTQEQIQCMQEMGNGKANRLYEAYL 97          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: SMAP2_HUMAN (Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.686e-15
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  448 KSEKPIDVLRRVCGN-------DRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELL 714
            KS K +D  + V  N         CADC +  P WAS N+GV +CI C+G+HRNLGVHIS+V+S+ LD   W    I   Q +GN  AN ++E  L
Sbjct:    4 KSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTQEQIQCMQEMGNGKANRLYEAYL 97          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: SMAP2_BOVIN (Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.686e-15
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  448 KSEKPIDVLRRVCGN-------DRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELL 714
            KS K +D  + V  N         CADC +  P WAS N+GV +CI C+G+HRNLGVHIS+V+S+ LD   W    I   Q +GN  AN ++E  L
Sbjct:    4 KSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTQEQIQCMQEMGNGKANRLYEAYL 97          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGD11_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.686e-15
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  451 SEKPIDVLRRVC---GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLD 630
            S  P D L ++    GN  CADCG+PEP W SL+LGV +CI+CSGVHR+LGVHISKV S+ LD
Sbjct:   43 SSDPRDRLEKLLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLSVKLD 105          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: GCS1_YEAST (ADP-ribosylation factor GTPase-activating protein GCS1 OS=Saccharomyces cerevisiae GN=GCS1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.508e-15
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKP 777
            L+++  N +C DCGAP P WA+   G  +C+EC+G+HR LGVHIS VRS+T+D   ++P  +   +  GN       E L +   + ++DL+ P   K D P
Sbjct:   17 LQKIGANKKCMDCGAPNPQWATPKFGAFICLECAGIHRGLGVHISFVRSITMD--QFKPEELLRMEKGGN-------EPLTEWFKSHNIDLSLPQKVKYDNP 109          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: SMAP1_HUMAN (Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.333e-14
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  490 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWE 705
            N  CADC A  P WAS N+GV +CI C+G+HRNLGVHIS+V+S+ LD   W    I   Q +GN  A  ++E
Sbjct:   30 NKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD--QWTAEQIQCMQDMGNTKARLLYE 99          
The following BLAST results are available for this feature:
BLAST of FC878354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
AGD13_ARATH7.067e-1653.95Probable ADP-ribosylation factor GTPase-activating... [more]
SMAP2_CHICK9.230e-1652.00Stromal membrane-associated protein 2 OS=Gallus ga... [more]
SMAP1_MOUSE1.574e-1552.78Stromal membrane-associated protein 1 OS=Mus muscu... [more]
GIT2_MOUSE1.574e-1537.80ARF GTPase-activating protein GIT2 OS=Mus musculus... [more]
SMAP2_MOUSE2.686e-1544.79Stromal membrane-associated protein 2 OS=Mus muscu... [more]
SMAP2_HUMAN2.686e-1544.79Stromal membrane-associated protein 2 OS=Homo sapi... [more]
SMAP2_BOVIN2.686e-1544.79Stromal membrane-associated protein 2 OS=Bos tauru... [more]
AGD11_ARATH2.686e-1561.90Probable ADP-ribosylation factor GTPase-activating... [more]
GCS1_YEAST3.508e-1539.22ADP-ribosylation factor GTPase-activating protein ... [more]
SMAP1_HUMAN1.333e-1451.39Stromal membrane-associated protein 1 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA58BH12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878354 ID=FC878354; Name=FC878354; organism=Citrus clementina; type=EST; length=852bp
CTTGGTTCTGGACTGTTGAGTCGGTGGCTCTCTTCTCATTATCATGGTGG
AGTACATGATGAAAAATCTGCTGCTCGTCATACAGTGAACTTGCTTACAT
CAACAATCAAAGTTGATGCTGACCAATCAGACCTGAGGTTTTGTTTCAGA
ATCATTTCCCCTACAAAAAACTATACTTTGCAGGCAGAGAGTGCTCTGGA
TCAGATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTTA
GTTCTCAGGCTCCTGAGAGGTGTCTGCCTACTAGTCCTATGGGAAGTGGC
CATCATCGATCAGCTAGTGACAGTAGTTCATTTGAAAGTTCTGACTTTGA
TCATGCTGCCGTTGAAGAATATACATCTGAGAGGAATCTTACAAGTGCAT
ATCATGAACGTCAATCGAGAGGTTCACAACAGCAGCGCTCATGTGTAAAA
AGTGAGAAGCCAATTGATGTGCTGCGAAGAGTATGTGGGAATGATAGATG
TGCTGATTGTGGGGCACCTGAACCTGATTGGGCGTCTTTAAACCTTGGTG
TTCTTGTTTGTATCGAATGCTCTGGTGTCCACCGAAATCTTGGTGTGCAC
ATATCAAAGGTCAGGTCACTAACCCTTGATGTAAAAGTATGGGAGCCATC
TGTTATAACTCTGTTTCAGTCTCTGGGCAATGCTTTTGCAAACTCAGTCT
GGGAGGAATTATTGCAATCAAGAAGTGCCTTTCATGTTGATCTTACTCCC
CCAAGCTTGCACAAGTCTGATAAACCACAGTTGCTTCTTATGGGCAAACC
TAGTCACTCTGATTCTATATCAGTGAAGGAAAAGTTCATCCATGCAAAGT
AT
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