FC878354

Overview
NameFC878354
Unique NameFC878354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: GIT2_HUMAN (ARF GTPase-activating protein GIT2 OS=Homo sapiens GN=GIT2 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.333e-14
Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  475 RRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISV-KEKFIHAKY 852
            +R+  ++ CADC  P+P WAS+N G  +C EC  VHR+LG HIS+VR   L    W P+++ + ++L N  ANS+WE         H  L P S+    +       K +  D +   K +FI AKY
Sbjct:    3 KRLRSSEVCADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRH--LKHTPWPPTLLQMVETLYNNGANSIWE---------HSLLDPASIMSGRR-------KANPQDKVHPNKAEFIRAKY 111          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: GIT1_RAT (ARF GTPase-activating protein GIT1 OS=Rattus norvegicus GN=Git1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.333e-14
Identity = 46/119 (38.66%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  499 CADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSI-SVKEKFIHAKY 852
            CADC AP+P WAS++ GVLVC EC  VHR+LG HIS V+ L      W P+++ +  +L +  ANS+WE         H  L P  +    +       K +  D +  +K +FI AKY
Sbjct:   11 CADCSAPDPGWASISRGVLVCDECCSVHRSLGRHISIVKHLR--HSAWPPTLLQMVHTLASNGANSIWE---------HSLLDPAQVQSGRR-------KANPQDKVHPIKSEFIRAKY 111          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: GIT1_MOUSE (ARF GTPase-activating protein GIT1 OS=Mus musculus GN=Git1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.333e-14
Identity = 46/119 (38.66%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  499 CADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSI-SVKEKFIHAKY 852
            CADC AP+P WAS++ GVLVC EC  VHR+LG HIS V+ L      W P+++ +  +L +  ANS+WE         H  L P  +    +       K +  D +  +K +FI AKY
Sbjct:   11 CADCSAPDPGWASISRGVLVCDECCSVHRSLGRHISIVKHLR--HSAWPPTLLQMVHTLASNGANSIWE---------HSLLDPAQVQSGRR-------KANPQDKVHPIKSEFIRAKY 111          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: GIT1_HUMAN (ARF GTPase-activating protein GIT1 OS=Homo sapiens GN=GIT1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.333e-14
Identity = 46/119 (38.66%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  499 CADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSI-SVKEKFIHAKY 852
            CADC AP+P WAS++ GVLVC EC  VHR+LG HIS V+ L      W P+++ +  +L +  ANS+WE         H  L P  +    +       K +  D +  +K +FI AKY
Sbjct:   11 CADCSAPDPGWASISRGVLVCDECCSVHRSLGRHISIVKHLR--HSAWPPTLLQMVHTLASNGANSIWE---------HSLLDPAQVQSGRR-------KANPQDKVHPIKSEFIRAKY 111          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGE2_YEAST (ADP-ribosylation factor GTPase-activating protein effector protein 2 OS=Saccharomyces cerevisiae GN=AGE2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.333e-14
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  445 VKSEKPIDVLRRVCGNDRCADCGAP-EPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVW-EPSVITLFQSLGNAFANSVWEELL 714
            V  +K +  L R  GN  CADC A   P WAS +LGV +CI+C+G+HR+LG HISKV+S+ LD   W E  ++ L Q   N  ANS +E  L
Sbjct:    5 VPVKKALSALLRDPGNSHCADCKAQLHPRWASWSLGVFICIKCAGIHRSLGTHISKVKSVDLD--TWKEEHLVKLIQFKNNLRANSYYEATL 94          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: YAUA_SCHPO (Uncharacterized protein C26A3.10 OS=Schizosaccharomyces pombe GN=SPAC26A3.10 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.274e-14
Identity = 75/259 (28.96%), Postives = 108/259 (41.70%), Query Frame = 1
Query:  136 RFCFRIISPTKNYTLQAESALDQMDWIEKITGV----------IASLLSSQA--PERCLP-------TSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGA-PEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            RFCF +++P      QA SA +   WIE I             +A+ LS+    P +  P       T+P+                       ++++    N  + + E            ++  +  DV      N  CADCG+  +  W S+N+ V++CIECSG+HR+LG HISK RSL LD    +  V  L   +GNA  N V+E+           L+ PSL    KP      KP H  +  VK  F   KY
Sbjct:  598 RFCFEVVTPKLKRLYQATSAEEMDSWIEAICEAAKISSFQLSRVATPLSASVRRPSKVFPLFSTSFETTPISRKLSGSGIKKAFSRKGSWN---LQQFFRSDNSGTMHMEQLERYHASANIFIQMLRKTDV-----SNSVCADCGSVKDVTWCSINIPVVLCIECSGIHRSLGTHISKTRSLLLDSLSQQSKV--LLCKIGNAAVNRVYEK----------GLSNPSL----KP------KPEH--NAQVKLAFAQKKY 824          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ADAP2_RAT (Arf-GAP with dual PH domain-containing protein 2 OS=Rattus norvegicus GN=Adap2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.615e-14
Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 1
Query:  487 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            GN  CADCGA +PDWAS  LGV +C+ CSGVHRN    ISKV+S+ LD   W+ S++      GN    + +E  +   + ++V                    P  SD + +KE++I AKY
Sbjct:   21 GNGHCADCGAADPDWASYKLGVFICLHCSGVHRNF-PDISKVKSVRLD--FWDDSMVEFMTHNGNLSVKAKFEARVP--TFYYV--------------------PQASDCLVLKEQWIRAKY 117          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ADAP2_MOUSE (Arf-GAP with dual PH domain-containing protein 2 OS=Mus musculus GN=Adap2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.925e-13
Identity = 45/122 (36.89%), Postives = 63/122 (51.64%), Query Frame = 1
Query:  487 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            GN  CADCGA +PDWAS  LG+ +C+ CSGVHRN    ISKV+S+ LD   W+ S++      GN    + +E  +    AF+                     P  +D + +KE++I AKY
Sbjct:   21 GNGHCADCGAADPDWASYKLGIFICLHCSGVHRNF-PDISKVKSVRLD--FWDDSMVEFMTHHGNLNVKAKFEARV---PAFYY-------------------VPQANDCLVLKEQWIRAKY 117          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARFG2_XENTR (ADP-ribosylation factor GTPase-activating protein 2 OS=Xenopus tropicalis GN=arfgap2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.514e-13
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 708
            LR    N  C DCGA  P WAS+  GV +CI+CSGVHR+LGVH+S +RS  LD   W    +   Q  GNA AN+ + +
Sbjct:   17 LRAAPTNKSCFDCGAKNPSWASIPYGVFLCIDCSGVHRSLGVHLSFIRSTELDSN-WSWFQLRCMQVGGNASANAFFHQ 94          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARFG2_BOVIN (ADP-ribosylation factor GTPase-activating protein 2 OS=Bos taurus GN=ARFGAP2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.514e-13
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 708
            LR +  N  C DCGA  P WAS+  GV +CI+CSGVHR+LGVH+S +RS  LD   W    +   Q  GNA A + + +
Sbjct:   17 LRAIPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELD-STWSWFQLRCMQVGGNANATAFFRQ 94          
The following BLAST results are available for this feature:
BLAST of FC878354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
GIT2_HUMAN1.333e-1437.01ARF GTPase-activating protein GIT2 OS=Homo sapiens... [more]
GIT1_RAT1.333e-1438.66ARF GTPase-activating protein GIT1 OS=Rattus norve... [more]
GIT1_MOUSE1.333e-1438.66ARF GTPase-activating protein GIT1 OS=Mus musculus... [more]
GIT1_HUMAN1.333e-1438.66ARF GTPase-activating protein GIT1 OS=Homo sapiens... [more]
AGE2_YEAST1.333e-1447.83ADP-ribosylation factor GTPase-activating protein ... [more]
YAUA_SCHPO2.274e-1428.96Uncharacterized protein C26A3.10 OS=Schizosaccharo... [more]
ADAP2_RAT6.615e-1437.70Arf-GAP with dual PH domain-containing protein 2 O... [more]
ADAP2_MOUSE1.925e-1336.89Arf-GAP with dual PH domain-containing protein 2 O... [more]
ARFG2_XENTR2.514e-1348.10ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_BOVIN2.514e-1346.84ADP-ribosylation factor GTPase-activating protein ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA58BH12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878354 ID=FC878354; Name=FC878354; organism=Citrus clementina; type=EST; length=852bp
CTTGGTTCTGGACTGTTGAGTCGGTGGCTCTCTTCTCATTATCATGGTGG
AGTACATGATGAAAAATCTGCTGCTCGTCATACAGTGAACTTGCTTACAT
CAACAATCAAAGTTGATGCTGACCAATCAGACCTGAGGTTTTGTTTCAGA
ATCATTTCCCCTACAAAAAACTATACTTTGCAGGCAGAGAGTGCTCTGGA
TCAGATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTTA
GTTCTCAGGCTCCTGAGAGGTGTCTGCCTACTAGTCCTATGGGAAGTGGC
CATCATCGATCAGCTAGTGACAGTAGTTCATTTGAAAGTTCTGACTTTGA
TCATGCTGCCGTTGAAGAATATACATCTGAGAGGAATCTTACAAGTGCAT
ATCATGAACGTCAATCGAGAGGTTCACAACAGCAGCGCTCATGTGTAAAA
AGTGAGAAGCCAATTGATGTGCTGCGAAGAGTATGTGGGAATGATAGATG
TGCTGATTGTGGGGCACCTGAACCTGATTGGGCGTCTTTAAACCTTGGTG
TTCTTGTTTGTATCGAATGCTCTGGTGTCCACCGAAATCTTGGTGTGCAC
ATATCAAAGGTCAGGTCACTAACCCTTGATGTAAAAGTATGGGAGCCATC
TGTTATAACTCTGTTTCAGTCTCTGGGCAATGCTTTTGCAAACTCAGTCT
GGGAGGAATTATTGCAATCAAGAAGTGCCTTTCATGTTGATCTTACTCCC
CCAAGCTTGCACAAGTCTGATAAACCACAGTTGCTTCTTATGGGCAAACC
TAGTCACTCTGATTCTATATCAGTGAAGGAAAAGTTCATCCATGCAAAGT
AT
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