FC878354

Overview
NameFC878354
Unique NameFC878354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: YC8E_SCHPO (Uncharacterized protein C622.14 OS=Schizosaccharomyces pombe GN=SPCC622.14 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.283e-13
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 1
Query:  463 IDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANS 696
            +D L R+  N +C DC AP P WAS NLG+ +C++CSG HR LGV  S VRS+T+D   W    + + +  GN+ A +
Sbjct:    5 LDQLTRLPENKKCFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVRSITMD--NWSERQVKMMEVGGNSNAKT 80          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARFG2_PONAB (ADP-ribosylation factor GTPase-activating protein 2 OS=Pongo abelii GN=ARFGAP2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.283e-13
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 708
            LR V  N  C DCGA  P WAS+  GV +CI+CSGVHR+LGVH+S +RS  LD   W    +   Q  GNA A + + +
Sbjct:   17 LRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSN-WNWFQLRCMQVGGNANATAFFRQ 94          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARFG2_HUMAN (ADP-ribosylation factor GTPase-activating protein 2 OS=Homo sapiens GN=ARFGAP2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.283e-13
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 708
            LR V  N  C DCGA  P WAS+  GV +CI+CSGVHR+LGVH+S +RS  LD   W    +   Q  GNA A + + +
Sbjct:   17 LRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSN-WNWFQLRCMQVGGNANATAFFRQ 94          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARFG2_RAT (ADP-ribosylation factor GTPase-activating protein 2 OS=Rattus norvegicus GN=Arfgap2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.288e-13
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 708
            LR +  N  C DCGA  P WAS+  GV +CI+CSGVHR+LGVH+S +RS  LD   W    +   Q  GNA A + + +
Sbjct:   17 LRAIPTNKACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSN-WSWLQLRCMQVGGNANATAFFRQ 94          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARFG2_MOUSE (ADP-ribosylation factor GTPase-activating protein 2 OS=Mus musculus GN=Arfgap2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.288e-13
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 708
            LR +  N  C DCGA  P WAS+  GV +CI+CSGVHR+LGVH+S +RS  LD   W    +   Q  GNA A + + +
Sbjct:   17 LRAIPTNKACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSN-WSWLQLRCMQVGGNANATAFFRQ 94          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: UCP3_SCHPO (UBA domain-containing protein 3 OS=Schizosaccharomyces pombe GN=ucp3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.600e-13
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  466 DVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVW 702
            ++++ V GN+ CADC      WAS NLG+ +C+ C+ +HR LG H+SKV+S++LD   W    I   +  GN  AN  W
Sbjct:   12 ELVQSVSGNNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVKSISLD--EWSNDQIEKMKHWGNINANRYW 88          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARFG3_RAT (ADP-ribosylation factor GTPase-activating protein 3 OS=Rattus norvegicus GN=Arfgap3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.314e-13
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 708
            LR V  N  C DCGA  P WAS++ GV +CI+CSG HR+LGVH+S +RS  LD   W    +   Q  GNA A+S + +
Sbjct:   16 LRSVPTNKVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFIRSTELDSN-WSWFQLRCMQVGGNANASSFFHQ 93          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARFG3_HUMAN (ADP-ribosylation factor GTPase-activating protein 3 OS=Homo sapiens GN=ARFGAP3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.314e-13
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 708
            LR V  N  C DCGA  P WAS+  GV +CI+CSG HR+LGVH+S +RS  LD   W    +   Q  GNA A+S + +
Sbjct:   16 LRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSN-WSWFQLRCMQVGGNASASSFFHQ 93          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARFG3_PONAB (ADP-ribosylation factor GTPase-activating protein 3 OS=Pongo abelii GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 708
            LR V  N  C DCGA  P WAS+  GV +CI+CSG HR+LGVH+S +RS  LD   W    +   Q  GNA A+S + +
Sbjct:   16 LRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSN-WSWFQLRCMQVGGNANASSFFHQ 93          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARFG3_MACFA (ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 708
            LR V  N  C DCGA  P WAS+  GV +CI+CSG HR+LGVH+S +RS  LD   W    +   Q  GNA A+S + +
Sbjct:   16 LRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSN-WSWFQLRCMQVGGNANASSFFHQ 93          
The following BLAST results are available for this feature:
BLAST of FC878354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
YC8E_SCHPO3.283e-1344.87Uncharacterized protein C622.14 OS=Schizosaccharom... [more]
ARFG2_PONAB3.283e-1348.10ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_HUMAN3.283e-1348.10ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_RAT4.288e-1346.84ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_MOUSE4.288e-1346.84ADP-ribosylation factor GTPase-activating protein ... [more]
UCP3_SCHPO5.600e-1341.77UBA domain-containing protein 3 OS=Schizosaccharom... [more]
ARFG3_RAT7.314e-1348.10ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_HUMAN7.314e-1348.10ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_PONAB9.552e-1348.10ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_MACFA9.552e-1348.10ADP-ribosylation factor GTPase-activating protein ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA58BH12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878354 ID=FC878354; Name=FC878354; organism=Citrus clementina; type=EST; length=852bp
CTTGGTTCTGGACTGTTGAGTCGGTGGCTCTCTTCTCATTATCATGGTGG
AGTACATGATGAAAAATCTGCTGCTCGTCATACAGTGAACTTGCTTACAT
CAACAATCAAAGTTGATGCTGACCAATCAGACCTGAGGTTTTGTTTCAGA
ATCATTTCCCCTACAAAAAACTATACTTTGCAGGCAGAGAGTGCTCTGGA
TCAGATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTTA
GTTCTCAGGCTCCTGAGAGGTGTCTGCCTACTAGTCCTATGGGAAGTGGC
CATCATCGATCAGCTAGTGACAGTAGTTCATTTGAAAGTTCTGACTTTGA
TCATGCTGCCGTTGAAGAATATACATCTGAGAGGAATCTTACAAGTGCAT
ATCATGAACGTCAATCGAGAGGTTCACAACAGCAGCGCTCATGTGTAAAA
AGTGAGAAGCCAATTGATGTGCTGCGAAGAGTATGTGGGAATGATAGATG
TGCTGATTGTGGGGCACCTGAACCTGATTGGGCGTCTTTAAACCTTGGTG
TTCTTGTTTGTATCGAATGCTCTGGTGTCCACCGAAATCTTGGTGTGCAC
ATATCAAAGGTCAGGTCACTAACCCTTGATGTAAAAGTATGGGAGCCATC
TGTTATAACTCTGTTTCAGTCTCTGGGCAATGCTTTTGCAAACTCAGTCT
GGGAGGAATTATTGCAATCAAGAAGTGCCTTTCATGTTGATCTTACTCCC
CCAAGCTTGCACAAGTCTGATAAACCACAGTTGCTTCTTATGGGCAAACC
TAGTCACTCTGATTCTATATCAGTGAAGGAAAAGTTCATCCATGCAAAGT
AT
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