FC878354

Overview
NameFC878354
Unique NameFC878354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARFG3_BOVIN (ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 708
            LR V  N  C DCGA  P WAS+  GV +CI+CSG HR+LGVH+S +RS  LD   W    +   Q  GNA A+S + +
Sbjct:   16 LRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSN-WSWFQLRCMQVGGNANASSFFHQ 93          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: YIQ9_SCHPO (Uncharacterized protein C824.09c OS=Schizosaccharomyces pombe GN=SPAC824.09c PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.629e-12
Identity = 39/76 (51.32%), Postives = 45/76 (59.21%), Query Frame = 1
Query:  490 NDRCADCGAPE-PDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELL 714
            N  CADC   E P WAS NLGV +CI CSGVHR+LGVH+S+V+S+ LD   W           GN  AN  WE  L
Sbjct:   25 NKVCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVKSVDLD--SWTDEQTENMTRWGNERANLYWEAKL 98          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARFG3_MOUSE (ADP-ribosylation factor GTPase-activating protein 3 OS=Mus musculus GN=Arfgap3 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.629e-12
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 708
            LR V  N  C DCGA  P WAS++ GV +CI+CSG HR+LGVH+S +RS  LD   W    +   Q  GN+ A+S + +
Sbjct:   16 LRSVPTNKVCFDCGAKNPSWASISYGVFLCIDCSGSHRSLGVHLSFIRSTELDSN-WSWFQLRCMQVGGNSNASSFFHQ 93          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ADAP2_HUMAN (Arf-GAP with dual PH domain-containing protein 2 OS=Homo sapiens GN=ADAP2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.779e-12
Identity = 43/122 (35.25%), Postives = 62/122 (50.82%), Query Frame = 1
Query:  487 GNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            GN  CADCGA +PDWAS  LG+ +C+ C GVHRN    IS+V+S+ LD   W+ S++      GN    + +E  +    AF+                     P  +D + +KE++I AKY
Sbjct:   21 GNAHCADCGAADPDWASYKLGIFICLNCCGVHRNF-PDISRVKSVRLD--FWDDSIVEFMIHNGNLRVKAKFEARV---PAFYY-------------------IPQANDCLVLKEQWIRAKY 117          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: YQP4_CAEEL (Uncharacterized protein F07F6.4 OS=Caenorhabditis elegans GN=F07F6.4 PE=4 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1
Query:  472 LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWE 705
            +R +  N  C DCGA  P W ++  GV +CI+CS VHRNLGVH++ VRS  LD   W    +   Q  GN  AN  ++
Sbjct:   19 MRALPPNKLCFDCGARNPTWCTVTYGVFLCIDCSAVHRNLGVHLTFVRSTNLDTN-WTWLQLRAMQLGGNGNANQFFK 95          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGE1_YEAST (ADP-ribosylation factor GTPase-activating protein effector protein 1 OS=Saccharomyces cerevisiae GN=AGE1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 35/88 (39.77%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  463 IDVLRRVC-GNDRCADCGAPEP-DWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQS 720
            + ++R++   N +C DCG+    +W S+NL  ++CI+CSGVHR+LG HISK+RSLTLD       +  L  ++ N+  N+++E  L++
Sbjct:  173 LSIVRKIDKSNLKCCDCGSTATVEWVSINLLCILCIKCSGVHRSLGSHISKIRSLTLDNFTSLELMHLLQNNVSNSNVNAIYESNLRN 260          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGD6_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 1
Query:  490 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEE 708
            N  C DC    P WAS++ G+ +C+ECSG HR LGVHIS VRS+T+D   W    I   ++ GN   N  + +
Sbjct:   16 NKVCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMD--SWSAIQIKKMEAGGNERLNKFFAQ 86          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARFG1_RAT (ADP-ribosylation factor GTPase-activating protein 1 OS=Rattus norvegicus GN=Arfgap1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.845e-11
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  448 KSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNA 684
            ++ K +  +R    N+ C +CGA  P W S+  G+ +C+ECSG HR LGVH+S VRS+T+D   W+   +   ++ GNA
Sbjct:    5 RTRKVLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMKAGGNA 81          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ARFG1_MOUSE (ADP-ribosylation factor GTPase-activating protein 1 OS=Mus musculus GN=Arfgap1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.845e-11
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  448 KSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNA 684
            ++ K +  +R    N+ C +CGA  P W S+  G+ +C+ECSG HR LGVH+S VRS+T+D   W+   +   ++ GNA
Sbjct:    5 RTRKVLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD--KWKDIELEKMKAGGNA 81          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGD8_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.845e-11
Identity = 32/64 (50.00%), Postives = 37/64 (57.81%), Query Frame = 1
Query:  490 NDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGN 681
            N  C DC A  P WAS+  G+ +CI+CS  HRNLGVHIS VRS  LD   W P  +      GN
Sbjct:   25 NKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLD--SWSPEQLRTMMFGGN 86          
The following BLAST results are available for this feature:
BLAST of FC878354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
ARFG3_BOVIN9.552e-1348.10ADP-ribosylation factor GTPase-activating protein ... [more]
YIQ9_SCHPO1.629e-1251.32Uncharacterized protein C824.09c OS=Schizosaccharo... [more]
ARFG3_MOUSE1.629e-1246.84ADP-ribosylation factor GTPase-activating protein ... [more]
ADAP2_HUMAN2.779e-1235.25Arf-GAP with dual PH domain-containing protein 2 O... [more]
YQP4_CAEEL3.073e-1143.59Uncharacterized protein F07F6.4 OS=Caenorhabditis ... [more]
AGE1_YEAST3.073e-1139.77ADP-ribosylation factor GTPase-activating protein ... [more]
AGD6_ARATH5.241e-1143.84Probable ADP-ribosylation factor GTPase-activating... [more]
ARFG1_RAT6.845e-1140.51ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG1_MOUSE6.845e-1140.51ADP-ribosylation factor GTPase-activating protein ... [more]
AGD8_ARATH6.845e-1150.00Probable ADP-ribosylation factor GTPase-activating... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA58BH12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878354 ID=FC878354; Name=FC878354; organism=Citrus clementina; type=EST; length=852bp
CTTGGTTCTGGACTGTTGAGTCGGTGGCTCTCTTCTCATTATCATGGTGG
AGTACATGATGAAAAATCTGCTGCTCGTCATACAGTGAACTTGCTTACAT
CAACAATCAAAGTTGATGCTGACCAATCAGACCTGAGGTTTTGTTTCAGA
ATCATTTCCCCTACAAAAAACTATACTTTGCAGGCAGAGAGTGCTCTGGA
TCAGATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTTA
GTTCTCAGGCTCCTGAGAGGTGTCTGCCTACTAGTCCTATGGGAAGTGGC
CATCATCGATCAGCTAGTGACAGTAGTTCATTTGAAAGTTCTGACTTTGA
TCATGCTGCCGTTGAAGAATATACATCTGAGAGGAATCTTACAAGTGCAT
ATCATGAACGTCAATCGAGAGGTTCACAACAGCAGCGCTCATGTGTAAAA
AGTGAGAAGCCAATTGATGTGCTGCGAAGAGTATGTGGGAATGATAGATG
TGCTGATTGTGGGGCACCTGAACCTGATTGGGCGTCTTTAAACCTTGGTG
TTCTTGTTTGTATCGAATGCTCTGGTGTCCACCGAAATCTTGGTGTGCAC
ATATCAAAGGTCAGGTCACTAACCCTTGATGTAAAAGTATGGGAGCCATC
TGTTATAACTCTGTTTCAGTCTCTGGGCAATGCTTTTGCAAACTCAGTCT
GGGAGGAATTATTGCAATCAAGAAGTGCCTTTCATGTTGATCTTACTCCC
CCAAGCTTGCACAAGTCTGATAAACCACAGTTGCTTCTTATGGGCAAACC
TAGTCACTCTGATTCTATATCAGTGAAGGAAAAGTTCATCCATGCAAAGT
AT
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