FC878360

Overview
NameFC878360
Unique NameFC878360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length863
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: FADA_MARAV (3-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=fadA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.951e-19
Identity = 66/220 (30.00%), Postives = 107/220 (48.64%), Query Frame = 3
Query:  204 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTT 860
            DVV+V   RT + +AK G F++  A+ L A +++A+ E+  +L+P EV D++ G V           R  +     P     +TVNR C S + A+   A AI+ G  D+ +  G+E M    ++     NP    ++     +  MG+T+E +A+  G+TR++QD                G+FK+EI+P+       + G  K   I  D+ IRP TT
Sbjct:    7 DVVVVDCVRTPMGRAKNGCFRNVRAETLSAALIEALFERNPKLDPKEVEDVIWGCVNQTKEQGFNVARQISLLTRIPHESAAQTVNRLCGSAMSAIHTAAQAIQTGNGDVFLVGGVEHMGHVPMTEGFDHNPAASKYSAKASNM--MGLTAEMLAKMHGITREQQDEFGARSHRLAHEATQEGRFKNEIVPIEG---HDENGFVK--LIEEDETIRPETT 219          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: FADA_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.023e-18
Identity = 66/219 (30.14%), Postives = 105/219 (47.95%), Query Frame = 3
Query:  210 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            VIV   RT + ++K G FK+  A+DL A ++K ++++   ++P+ + DI  G V           R AA  AG P +VP  TVNR C S +QA+ D A AI  G  D  +  G+E M    ++     +P   + T        MG+T+E +A   G++R++QD                G+F+ EI+ +     D        + +  D+ IRP TT+
Sbjct:    5 VIVDCIRTPMGRSKGGVFKNKRAEDLSAHLMKGLLDRNPAVDPASIDDIYWGCVQQTLEQGFNVARNAALLAGIPHSVPAVTVNRLCGSSMQALHDAARAIMTGAGDTYLIGGVEHMGHVPMTHGNDFHP--GLATSIAQAAGSMGLTAEYLATLHGISREQQDEFAYRSHQRAQAATVEGRFRREILAMEGHAADGSL-----ILVEDDEVIRPETTV 216          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: FADA_ACIBT (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=fadA PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.023e-18
Identity = 66/220 (30.00%), Postives = 106/220 (48.18%), Query Frame = 3
Query:  204 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            DVVIV   R+A+ K+K G F++  AD L A +++A+I + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M    + ++  ++   E           MG+T+E + +  G+TR+EQD                G+FK+EII      V+       ++   +D+ IRP+  +
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALIARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNGITREEQDTFGVESHRRAWAATQEGRFKNEIIG-----VEGHDANGFKILCDIDEVIRPDANL 220          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: THIL_ZOORA (Acetyl-CoA acetyltransferase OS=Zoogloea ramigera GN=phbA PE=1 SV=4)

HSP 1 Score: 92.8189 bits (229), Expect = 2.642e-18
Identity = 72/228 (31.58%), Postives = 115/228 (50.44%), Query Frame = 3
Query:  210 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV--NSISVVG--QVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            +++A+ RTA+  +  G F +T A +L A V+ AV+E+  +   EV ++++G VL  G  +    R AA  AG P+      +N+ C SGL+AVA     I  G   I +A G+ESM++  +   + G  ++     I T  +D L        MG T+ENVA+++ ++R EQD                G+FKDEI+P   K      G +  +T+  D+ IR   T+
Sbjct:    6 IVIASARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLAGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATL 225          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: THIL_RHIME (Acetyl-CoA acetyltransferase OS=Rhizobium meliloti GN=phbA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.642e-18
Identity = 75/229 (32.75%), Postives = 116/229 (50.66%), Query Frame = 3
Query:  207 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV--NSISVVG--QVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            +VI +A RTA+  +  G F +TLA +L A  +KAV+E+  +   EV ++++G VL P        R AA  AG P+      +N+ C SGL+AVA     I  G   + +A G+ESM++  +   + G  ++     I T  +D L        MGIT+ENVA+++ +TR+EQD                G+F DEI+P    +V  + G    V +  D+ IR   T+
Sbjct:    6 IVIASAARTAV-GSFNGAFGNTLAHELGAAAIKAVLERAGVEAGEVDEVILGQVL-PAGEGQNPARQAAMKAGLPQEKTAWGMNQLCGSGLRAVALGMQQIATGDAKVIVAGGMESMSMAPHCAHLRGGVKMGDYKMIDTMIKDGLTDAFYGYHMGITAENVARKWQLTREEQDEFALASQNKAEAAQKAGRFADEIVPF---VVKTRKG---DVNVDQDEYIRHGATL 226          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: FADA_ACIBY (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AYE) GN=fadA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.642e-18
Identity = 65/220 (29.55%), Postives = 106/220 (48.18%), Query Frame = 3
Query:  204 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M    + ++  ++   E           MG+T+E + +  G+TR+EQD                G+FK+EII      V+       ++   +D+ IRP+  +
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNGITREEQDAFGVESHRRAWAATQEGRFKNEIIG-----VEGHDANGFKILCDIDEVIRPDANL 220          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: FADA_ACIBS (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain SDF) GN=fadA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.642e-18
Identity = 65/220 (29.55%), Postives = 106/220 (48.18%), Query Frame = 3
Query:  204 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M    + ++  ++   E           MG+T+E + +  G+TR+EQD                G+FK+EII      V+       ++   +D+ IRP+  +
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNGITREEQDAFGVESHRRAWAATQEGRFKNEIIG-----VEGHDANGFKILCDIDEVIRPDANL 220          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: FADA_ACIBC (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain ACICU) GN=fadA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.642e-18
Identity = 65/220 (29.55%), Postives = 106/220 (48.18%), Query Frame = 3
Query:  204 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M    + ++  ++   E           MG+T+E + +  G+TR+EQD                G+FK+EII      V+       ++   +D+ IRP+  +
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNGITREEQDAFGVESHRRAWAATQEGRFKNEIIG-----VEGHDANGFKILCDIDEVIRPDANL 220          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: FADA_ACIB5 (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AB0057) GN=fadA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.642e-18
Identity = 65/220 (29.55%), Postives = 106/220 (48.18%), Query Frame = 3
Query:  204 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M    + ++  ++   E           MG+T+E + +  G+TR+EQD                G+FK+EII      V+       ++   +D+ IRP+  +
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNGITREEQDAFGVESHRRAWAATQEGRFKNEIIG-----VEGHDANGFKILCDIDEVIRPDANL 220          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: FADA_ACIB3 (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AB307-0294) GN=fadA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.642e-18
Identity = 65/220 (29.55%), Postives = 106/220 (48.18%), Query Frame = 3
Query:  204 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M    + ++  ++   E           MG+T+E + +  G+TR+EQD                G+FK+EII      V+       ++   +D+ IRP+  +
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNGITREEQDAFGVESHRRAWAATQEGRFKNEIIG-----VEGHDANGFKILCDIDEVIRPDANL 220          
The following BLAST results are available for this feature:
BLAST of FC878360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
FADA_MARAV6.951e-1930.003-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei ... [more]
FADA_PSEHT2.023e-1830.143-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]
FADA_ACIBT2.023e-1830.003-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
THIL_ZOORA2.642e-1831.58Acetyl-CoA acetyltransferase OS=Zoogloea ramigera ... [more]
THIL_RHIME2.642e-1832.75Acetyl-CoA acetyltransferase OS=Rhizobium meliloti... [more]
FADA_ACIBY2.642e-1829.553-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIBS2.642e-1829.553-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIBC2.642e-1829.553-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIB52.642e-1829.553-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIB32.642e-1829.553-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878360 ID=FC878360; Name=FC878360; organism=Citrus clementina; type=EST; length=863bp
CTGGTTCTCGATTCATCAGAACTCAAAAGCTTTCCATTGAAACCTGAGAG
TGAGAGATGGAGAAAGCTCTTCACAGACAGAGAATTCTGCTTCAACATCT
TCAACCTTCTTCTTCCCAAACCAGTGACTCGCCGGCTATTTCTGCTTCGA
TTTGTTCGGCTGGTGAAGCTGCAGGATACCATAGGAAGCCTGCTTTCGAT
GATGATGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCAAGGCGAA
ACGTGGAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCACCTGTTC
TAAAGGCAGTGATAGAGAAAACGAGGTTGAATCCCAGTGAAGTAGGGGAT
ATAGTTGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCATGGAGTG
TAGGATGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCCCTCAGAA
CTGTCAACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGATGTTGCA
ACAGCTATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTGGATTGGA
AAGCATGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAACCCCAAAG
TGGAGATCTTTACTCAAGCTCGGGACTGTCTGCTTCCTATGGGTATCACT
TCTGAAAATGTTGCACAGAGATTTGGTGTGACACGACAAGAGCAAGACCT
GGCTGCCGTTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCATCTGGCA
AGTTTAAAGATGAAATTATTCCAGTGAATACCAAGATTGTGGACCCAAAA
ACTGGAGTGGAGAAGCGTGTCACAATTTCTGTGGATGATGGAATTCGACC
AAACACAACAATT
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