FC878374

Overview
NameFC878374
Unique NameFC878374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: MTHR_HUMAN (Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 7.877e-17
Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = -2
Query:   30 DKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTAD----LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDP 359
            +K++ ++ S    FS EFFPP+T +G  NL  R DRM A  P + D+TW   G         ++ IA+   N   +ET++H+TC    +E+I   L   K  G++N++ALRGDP
Sbjct:   47 EKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDP 160          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: MTHR_BOVIN (Methylenetetrahydrofolate reductase OS=Bos taurus GN=MTHFR PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.877e-17
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = -2
Query:   30 DKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTAD----LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDP 359
            +K++ K+ S    FS EFFPP+T  G  NL  R DRM A  P F D+TW   G         ++ IA+   N   +ET++H+TC +   E+I   L   K  G++N+LALRGDP
Sbjct:   46 EKMKRKMDSGDKWFSLEFFPPRTAQGAVNLISRFDRMGAGGPLFVDVTWHPAGDPGSDKETSSMVIASTAVNYCGLETILHMTCCHQSREEITGHLNKAKQLGLKNILALRGDP 159          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: MTHR_MOUSE (Methylenetetrahydrofolate reductase OS=Mus musculus GN=Mthfr PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.029e-16
Identity = 44/114 (38.60%), Postives = 64/114 (56.14%), Query Frame = -2
Query:   30 DKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTAD----LTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDP 359
            +K++ ++ S    FS EFFPP+T +G  NL  R DRM A  P F D+TW   G         ++ IA+   N   +ET++H+TC     E+I   L   K  G++N++ALRGDP
Sbjct:   46 EKMRRRMDSGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLFVDVTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCQQRPEEITGHLHRAKQLGLKNIMALRGDP 159          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: MTHR_CAEEL (Probable methylenetetrahydrofolate reductase OS=Caenorhabditis elegans GN=C06A8.1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.098e-13
Identity = 40/120 (33.33%), Postives = 65/120 (54.17%), Query Frame = -2
Query:   15 DKIQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADL-----TLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQD 359
            ++I+  +   +  FS EFFPP+  +GV N  ER++R+      F D+TW  G   A++     +  IA  M +   V+TM+H+TC           L+  K+ G++++LALRGD P G +
Sbjct:   60 ERIERLIDEKQQFFSLEFFPPRFVNGVPNFLERVERLSEGGSVFVDMTWHMGSDPANVDKVTSSSSIAASMLDYCGVDTMLHMTCVQYNKADTLKHLEQAKAMGLRSILALRGDLPPGTE 179          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: METF_STRLI (5,10-methylenetetrahydrofolate reductase OS=Streptomyces lividans GN=metF PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.177e-12
Identity = 38/109 (34.86%), Postives = 63/109 (57.80%), Query Frame = -2
Query:   27 IQEKVASDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPP 353
            +++ +A+ K  +SFEF  PKT  G +NL+  + R+ A  P F  +T+GAGGST   T+    ++     +  + HLT  +  V ++ + +      GI+N+LA+RGDPP
Sbjct:   16 VRDILATGKTTYSFEFSAPKTPKGEKNLWSALRRVEAVAPDFVSVTYGAGGSTRAGTVRETQQIVADTTLTPVAHLTAVDHSVAELRNIIGQYADAGIRNMLAVRGDPP 124          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: METF_PECCC (5,10-methylenetetrahydrofolate reductase OS=Pectobacterium carotovorum subsp. carotovorum GN=metF PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.537e-12
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -2
Query:   27 KVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPP 329
            ++  SFEFFPP+T D  E L+  +DR+ +  P F  +T+GA     D T  I   ++    +E   HLTC +   E++    Q    +GI++++ALRGD P
Sbjct:   22 RINVSFEFFPPRTSDMEETLWSSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKTIKERTGLEAAPHLTCIDASREQLREIAQDYWESGIRHIVALRGDLP 122          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: METF_SHIFL (5,10-methylenetetrahydrofolate reductase OS=Shigella flexneri GN=metF PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 35/102 (34.31%), Postives = 58/102 (56.86%), Query Frame = -2
Query:   12 SFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDK 317
            SFEFFPP+T +  + L+  +DR+ +  P F  +T+GA     D T  I   +++   +E   HLTC +   +++    +   +NGI++++ALRGD P G  K
Sbjct:   26 SFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGK 127          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: METF_ECOLI (5,10-methylenetetrahydrofolate reductase OS=Escherichia coli (strain K12) GN=metF PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 35/102 (34.31%), Postives = 58/102 (56.86%), Query Frame = -2
Query:   12 SFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDK 317
            SFEFFPP+T +  + L+  +DR+ +  P F  +T+GA     D T  I   +++   +E   HLTC +   +++    +   +NGI++++ALRGD P G  K
Sbjct:   26 SFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPGSGK 127          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: METF_SALTY (5,10-methylenetetrahydrofolate reductase OS=Salmonella typhimurium GN=metF PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 34/102 (33.33%), Postives = 57/102 (55.88%), Query Frame = -2
Query:   12 SFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDK 317
            SFEFFPP+T +  + L+  +DR+ +  P F  +T+GA     D T  +   ++    +E   HLTC +   +++    +   +NGI++++ALRGD P G  K
Sbjct:   26 SFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDRTHSVIKGIKERTGLEAAPHLTCIDATRDELRTIARDYWNNGIRHIVALRGDLPPGSGK 127          
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: METF_BUCAP (5,10-methylenetetrahydrofolate reductase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=metF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 37/114 (32.46%), Postives = 60/114 (52.63%), Query Frame = -2
Query:   24 DKIQEKVAS--DKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPH 359
            D I++K+ +  DK+  SFEFFPPK  D  + LF  + ++    P    +T+GA       T  I  R+     + T  HLTC +  + ++    +    NGI++++ALRGD P+
Sbjct:   10 DIIKKKLENLNDKIQCSFEFFPPKNLDTEKKLFSSVVKLSLLKPFLFSVTYGANSGERKKTYSIVQRIHKKTGITTAPHLTCVDASLSELKEIAKFYWENGIRSIVALRGDVPN 123          
The following BLAST results are available for this feature:
BLAST of FC878374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
MTHR_HUMAN7.877e-1737.72Methylenetetrahydrofolate reductase OS=Homo sapien... [more]
MTHR_BOVIN7.877e-1740.35Methylenetetrahydrofolate reductase OS=Bos taurus ... [more]
MTHR_MOUSE1.029e-1638.60Methylenetetrahydrofolate reductase OS=Mus musculu... [more]
MTHR_CAEEL3.098e-1333.33Probable methylenetetrahydrofolate reductase OS=Ca... [more]
METF_STRLI1.177e-1234.865,10-methylenetetrahydrofolate reductase OS=Strept... [more]
METF_PECCC1.537e-1235.645,10-methylenetetrahydrofolate reductase OS=Pectob... [more]
METF_SHIFL2.622e-1234.315,10-methylenetetrahydrofolate reductase OS=Shigel... [more]
METF_ECOLI2.622e-1234.315,10-methylenetetrahydrofolate reductase OS=Escher... [more]
METF_SALTY5.842e-1233.335,10-methylenetetrahydrofolate reductase OS=Salmon... [more]
METF_BUCAP1.700e-1132.465,10-methylenetetrahydrofolate reductase OS=Buchne... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BG05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878374 ID=FC878374; Name=FC878374; organism=Citrus clementina; type=EST; length=609bp
ATCTGAACGAACTTATCCTGACCGTGAGGAGGATCGCCGCGAAGAGCGAG
AACGTTCTGGATGCCGTTGGACTTAATAGTCTGAAGAGCGTGATCGATCT
TCTCGACGGGCATGTTCGTGCACGTCAAATGCATCATCGTCTCGACGCAT
ATCGTGTTCTGCATCCTGTTCGCGATGTCGAGAGTCAGATCGGCCGTGGA
GCCACCCGCCCCCCACGTGATGTCGCAGAATGCCGGGTTGTGGGCCACCA
TGCGGTCCATCCGCTCGAACAAGTTCTCCACGCCATCTTCCGTCTTCGGC
GGGAAGAATTCGAAGGAGAAGACGACCTTGTCGGAGGCTACTTTCTCTTG
AATCTTGTCTATTACCTTCATTTTTGGTTCGGAGAGTAGCTACTGCTGCC
ACCGACAGGTCGTTTACGAGTGAGTTGTCGGTTGAGTTCAGATCTGCGAG
GGTGATTTATGAAAAAGAAAAATGGAAAGAATGGATGCGAGATGAAAGTA
AAAGAGAGTGGGTCTTTGTTTTTCTGCCTTTCGGAAATAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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