FC878374

Overview
NameFC878374
Unique NameFC878374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10522 contig Ccv1_Contig10522:1..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878374 vs. ExPASy Swiss-Prot
Match: METF_HAEIN (5,10-methylenetetrahydrofolate reductase OS=Haemophilus influenzae GN=metF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 39/121 (32.23%), Postives = 61/121 (50.41%), Query Frame = -2 
Query:   12 KVIDKIQEKVA--SDKVVFSFEFFPPKTEDGVENLFERMDRMVAHNPAFCDITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDK 368
            K ID + + +A  + K+  SFEFFPPK E     L++ + R+    P F  +T+GA     D T  I   ++    +E   HLT  +   E++    +    +GI+ ++ALRGD P G  K
Sbjct:    5 KEIDTLNQHIADFNKKINVSFEFFPPKNEKMETLLWDSIHRLKVLKPKFVSVTYGANSGERDRTHGIVKAIKQETGLEAAPHLTGIDATPEELKQIARDYWDSGIRRIVALRGDEPKGYAK 125
The following BLAST results are available for this feature:
BLAST of FC878374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
METF_HAEIN4.945e-1132.235,10-methylenetetrahydrofolate reductase OS=Haemop... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BG05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878374 ID=FC878374; Name=FC878374; organism=Citrus clementina; type=EST; length=609bp
ATCTGAACGAACTTATCCTGACCGTGAGGAGGATCGCCGCGAAGAGCGAG
AACGTTCTGGATGCCGTTGGACTTAATAGTCTGAAGAGCGTGATCGATCT
TCTCGACGGGCATGTTCGTGCACGTCAAATGCATCATCGTCTCGACGCAT
ATCGTGTTCTGCATCCTGTTCGCGATGTCGAGAGTCAGATCGGCCGTGGA
GCCACCCGCCCCCCACGTGATGTCGCAGAATGCCGGGTTGTGGGCCACCA
TGCGGTCCATCCGCTCGAACAAGTTCTCCACGCCATCTTCCGTCTTCGGC
GGGAAGAATTCGAAGGAGAAGACGACCTTGTCGGAGGCTACTTTCTCTTG
AATCTTGTCTATTACCTTCATTTTTGGTTCGGAGAGTAGCTACTGCTGCC
ACCGACAGGTCGTTTACGAGTGAGTTGTCGGTTGAGTTCAGATCTGCGAG
GGTGATTTATGAAAAAGAAAAATGGAAAGAATGGATGCGAGATGAAAGTA
AAAGAGAGTGGGTCTTTGTTTTTCTGCCTTTCGGAAATAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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