FC878377
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL4D_ARATH (Putative RING-H2 finger protein ATL4D OS=Arabidopsis thaliana GN=ATL4D PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.836e-30 Identity = 94/247 (38.06%), Postives = 120/247 (48.58%), Query Frame = 2 Query: 170 LFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQ---CTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNR--PPRSRSIG----WRRPSRWFPRSH 883 LFLF LPYVT Q S + +I+ ++L+S+F +L VY C E GG R RG+D VI +FP FLYS V+ KIG G +ECA+CL EF DEE LR +P CSH FH +CID WLS+ +TCPVCRANL + G++ P + DV + ++G +QE R V N PRSRS G W P + PRSH Sbjct: 20 LFLF---QCLPYVTCQQGSE-----SAGRNGKSKESSIIGIVLLSLFLLL--LVVYCLNYGCCIEENET---------GGHEVLHSRVRRGIDKDVIESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLSLKSGDS----FPHPSMDVETGNAQRG---VQE----SPDERSLTGSSVTCNNNANYTTPRSRSTGLLSSWHVPELFLPRSH 236
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL4A_ARATH (RING-H2 finger protein ATL4A OS=Arabidopsis thaliana GN=ATL4A PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.528e-27 Identity = 58/118 (49.15%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 308 FFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 661 F+I+ + YIR+C R + D I RR RGLD I +FP+F+Y+ R ++ G G LEC VCLNEF D+ETLRL+P C HVFH DC+D WLS +TCP+CRA +VP Sbjct: 23 FYIINY---YIRRCRNRAAAAGD-----IEEARMSPRRPPRGLDAEAIKSFPSFVYTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKVVP 132
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 4.380e-24 Identity = 65/168 (38.69%), Postives = 92/168 (54.76%), Query Frame = 2 Query: 260 KFNGTMAIVTVILVSVFFILGFFSVYIR-QCTERGRNSPDAFATII---GGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPG---ETPSSFIPVLNPDVGSSRLEQGSD 742 K + ++ ++ +IL +FFI G + +R T R+ D F + G + Q G+D S I+T P F Y ++ LK +CAVCL EF E+ LRL+PKCSH FHMDCID WL +H+TCP+CR++L+ + SSF+ VL S E G D Sbjct: 46 KISPSILLIIIILSIIFFISGLLHLLVRFLLTPSSRDREDYFDNVTALQGQLQQLFHLHDSGVDQSFIDTLPVFHYKSIIGLK--NYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSDLSSHQDPRSSFLLVLESASDHSSREIGGD 211
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL4I_ARATH (Putative RING-H2 finger protein ATL4I OS=Arabidopsis thaliana GN=ATL4I PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.839e-23 Identity = 58/135 (42.96%), Postives = 79/135 (58.52%), Query Frame = 2 Query: 281 IVTVILVSVFFILGFFSVYIRQC-----TERGRNSPDAFATIIGGINQRSRRGAR-GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQP 667 I+TVIL+ VFF +GFF++Y +C + R + Q GL+ +IN+FPTF YS+V++L+ K LECA+CL EF + LRL+ C HVFH +CID W +H TCPVCR +L P P Sbjct: 26 ILTVILL-VFFFIGFFTLYFCKCFLDTMVQAWRLHHGGDTVSDNPLQQPEAPPVNPGLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHRTCPVCRRDLDPPP 159
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL2C_ARATH (Putative RING-H2 finger protein ATL2C OS=Arabidopsis thaliana GN=ATL2C PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.840e-22 Identity = 52/137 (37.96%), Postives = 79/137 (57.66%), Query Frame = 2 Query: 260 KFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAF----ATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 658 K + ++ +IL +FFI G + ++ R S + + + G + Q G+D S+I+T P F Y ++ LKI +C VCL EF E+ LRL+PKCSH FH++CID WL +H+TCP+CR+NL+ Sbjct: 38 KITPNILLIIIILSIIFFISGLLHILVKFLLTPSRESREDYFDNVTALQGQLQQLFNLHDSGVDQSLIDTLPVFHYKSIVGLKISP--FDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLL 172
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL5L_ARATH (Putative RING-H2 finger protein ATL5L OS=Arabidopsis thaliana GN=ATL5L PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.403e-22 Identity = 68/197 (34.52%), Postives = 100/197 (50.76%), Query Frame = 2 Query: 281 IVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGAR-----------------GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETL-RLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ-PGETPSSFIPVLNPDVGSSRLEQGSDNIQEI-----SSTDVQRRDEEAPD 799 I+TVIL+ VFFI GFF++Y +C + T+ N G GL+ +I ++P F +S+V++L+ K LECA+CL EF +E L RL+ C HVFH +CID WL ++ TCPVCR NL P P I V+ + +R ++ + E+ SS + +R+ E PD Sbjct: 28 ILTVILLVVFFI-GFFAIYFCKCF---------YHTLTEAWNHHYHNGLPENQIQAQQEPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRRNLDPNAPENIKELIIEVIQENAHENRDQEQTSTSNEVMLSRQSSGNNERKIETLPD 214
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 3.470e-21 Identity = 61/152 (40.13%), Postives = 82/152 (53.95%), Query Frame = 2 Query: 257 PKFNGTMAIVTVILVSVFFILGFFSV------YIRQCTERGR----NSPDAFA-TIIGG--INQRSRRGAR---GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 664 P+ N T +++ I V + + FFS+ Y++ C R N P FA T GG N G R G+D SVI + P F + A+ K G LECAVCL F E LRL+PKC H FH++C+D WL AH+TCP+CR + P+ Sbjct: 46 PRHNFTSSLMPGIAVVIAVLTAFFSLTFLLLLYVKHCKRRNGSVYVNHPQRFAITRYGGGYYNGGGVVGGRKNSGIDRSVIESLPVFRFGALSGHKDG---LECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPE 194
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL2D_ARATH (Putative RING-H2 finger protein ATL2D OS=Arabidopsis thaliana GN=ATL2D PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.532e-21 Identity = 72/211 (34.12%), Postives = 103/211 (48.82%), Query Frame = 2 Query: 176 LFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIG------GINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEE 790 LF ++ L YV+AQ+ T F ++AI+T + VF + VY + R+ D+ I G+ RS R + GLD I + P F +SA++ LK G LEC+VCL++F D E LRL+PKC H FH+ CID WL H TCP+CR + + VL S R+ S+ +E S ++ EE Sbjct: 10 LFFFIIFLDYVSAQSPPPPN--LYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFHNDLRSETDSDGERIRHDRLWQGLFNRSSRFS-GLDKKAIESLPFFRFSALKGLKQG---LECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRV------NIEDDLSVLGNSSTSLRILNQSETREEDSRLEIYIEREE 208
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL2E_ARATH (RING-H2 finger protein ATL2E OS=Arabidopsis thaliana GN=ATL2E PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.319e-20 Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = 2 Query: 266 NGTMAIVTVILVSVFFILGFFSVYIRQC---------------TERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRAN 652 + TMA+ IL+ F +GFFSVY R T R SP +T + + R RGLD + + P + Y+ + + + +C +CL++F + ET+++IP C HVFH+DC+D WLS++ TCP+CR+N Sbjct: 47 DSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTRSSRMSPRRLSTSV--VVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQR----NEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSN 184
BLAST of FC878377 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 3.248e-19 Identity = 51/153 (33.33%), Postives = 80/153 (52.29%), Query Frame = 2 Query: 263 FNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIG---------GINQRSRRGAR------------GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 658 F+ + + IL S F ++ ++++ + C R NS A I G N + GA GLD+S+I + + Y R++ S +C+VCL+EF + E+LRL+PKC+H FH+ CID WL +H+ CP+CRA +V Sbjct: 56 FSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKY---RKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIV 205 The following BLAST results are available for this feature:
BLAST of FC878377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878377 ID=FC878377; Name=FC878377; organism=Citrus clementina; type=EST; length=884bpback to top |