FC878379 | Citrus Genome Database

Overview


Name	FC878379
Unique Name	FC878379
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	900

Libraries


Library Name	Type
IVIA1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC878379_ssr361	microsatellite	FC878379_ssr361:361..375.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10523	contig	Ccv1_Contig10523:1..900.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: TUP1_DICDI (General transcriptional corepressor tupA OS=Dictyostelium discoideum GN=tupA PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.712e-18
Identity = 58/169 (34.32%), Postives = 85/169 (50.30%), Query Frame = 1

Query:  421 HIFSGHSDE-----VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLE----GPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            H F   S++     + SV  SP D   +ATG  D     W I+         GH+  + +L +S +G+ + SG  D   +IWD   G    TL     GP  GV  V+  P GR+V AGS D+ V +W+A    +L  + GH  SV    F+PDGK++ +GS D +L++
Sbjct:  316 HAFVDESEKDGDLYIRSVCFSP-DGNYLATGAEDKTVKVWDIHTKKIQHTFYGHELDIYSLDYSSDGRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSVAMSPDGRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKSLKL 483

HSP 2 Score: 79.337 bits (194), Expect = 3.252e-14
Identity = 55/163 (33.74%), Postives = 79/163 (48.47%), Query Frame = 1

Query:  433 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSS----GNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT---ICTGSDDATLRV 900
            G  + V SVA SP D  LVA G  D+    W    G +    +GH DSV ++AFS +G+ LASG LD  +++WD S        + T  G    V  V++ P G  +++GS+D +V  W+        M  GH +SV     +P   +     TGS D   R+
Sbjct:  413 GPKNGVTSVAMSP-DGRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKSLKLWDLSGSRSRSRCRATFNGHKDFVLSVAFSPDGSWLISGSKDRSVQFWDPRNGTTHMMLQGHKNSVISVALSPKNNSHGVFATGSGDFRSRL 574

[Close]

BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: WDR69_DANRE (WD repeat-containing protein 69 OS=Danio rerio GN=wdr69 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.848e-18
Identity = 52/160 (32.50%), Postives = 77/160 (48.12%), Query Frame = 1

Query:  421 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            H+ SGH  E+  V  +  D +L+AT   D     W    G   + + GH D V ++ F+  GQL+A+   DG  +++ T +    C LEG  G +  V ++ +G  VL  S D T  +W     A L +  GH   +    F  +G TI TGS D T R+
Sbjct:  255 HVLSGHRGEISCVQFN-WDCSLIATASLDKSCKVWDAEGGQCLATLLGHNDEVLDVCFNYTGQLIATASADGTSRVFSTDTFQCLCQLEGHKGEISKVCFNAQGSRVLTASVDKTSRVWCVKTGACLQVLEGHSDEIFSCAFNYEGDTIITGSKDNTCRI 413

HSP 2 Score: 82.0333 bits (201), Expect = 5.017e-15
Identity = 46/163 (28.22%), Postives = 75/163 (46.01%), Query Frame = 1

Query:  412 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            +  H   GH + VY++A +      VATG  D     W    G      +GH   +  LAF+ +  L+A+G +D   ++WD  SG    TL G    +  + ++  G  ++ GS D T  +W+      +++ SGH   ++C  F  D   I T S D + +V
Sbjct:  125 EELHTLEGHRNVVYAIAFNNPYGDKVATGSFDKTCKLWSAETGKCFYTFRGHTAEIVCLAFNPQSTLVATGSMDTTAKLWDVESGEEVSTLAGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATASLDKSCKV 287

HSP 3 Score: 82.0333 bits (201), Expect = 5.017e-15
Identity = 49/160 (30.63%), Postives = 73/160 (45.62%), Query Frame = 1

Query:  421 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            + F GH+ E+  +A +P  +TLVATG  D     W +  G+  S + GH   + +L F+  G  L +G  D    +WD  SG     L G  G +  V ++    ++   S D +  +W+A+    L    GH   V    F   G+ I T S D T RV
Sbjct:  171 YTFRGHTAEIVCLAFNP-QSTLVATGSMDTTAKLWDVESGEEVSTLAGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATASLDKSCKVWDAEGGQCLATLLGHNDEVLDVCFNYTGQLIATASADGTSRV 329

HSP 4 Score: 72.0182 bits (175), Expect = 5.192e-12
Identity = 44/157 (28.03%), Postives = 70/157 (44.59%), Query Frame = 1

Query:  430 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            +GH  E+ S+  + T   LV TG  D     W +  G     + GH+  +S + F+ +  L+A+  LD   ++WD   G    TL G    V  V ++  G+++   S D T  +++ D    L    GH   ++   F   G  + T S D T RV
Sbjct:  216 AGHFAEIISLCFNTTGDRLV-TGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATASLDKSCKVWDAEGGQCLATLLGHNDEVLDVCFNYTGQLIATASADGTSRVFSTDTFQCLCQLEGHKGEISKVCFNAQGSRVLTASVDKTSRV 371

HSP 5 Score: 71.2478 bits (173), Expect = 8.856e-12
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 1

Query:  556 IQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSW-HPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            +Q H   ++N+AF+  G    +G  D   +IWDT+SG    TLEG    V  +++ +P G  V  GS D T  +W+A+       F GH + + C  F P    + TGS D T ++
Sbjct:   88 LQAHILPLTNVAFNKSGSCFITGSYDRTCKIWDTASGEELHTLEGHRNVVYAIAFNNPYGDKVATGSFDKTCKLWSAETGKCFYTFRGHTAEIVCLAFNPQSTLVATGSMDTTAKL 203

[Close]

BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.080e-17
Identity = 50/155 (32.26%), Postives = 90/155 (58.06%), Query Frame = 1

Query:  433 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGN-LKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDD 885
            GH++ V+    +P+  TL+A+G  D+    W    G+    I GH+D VS++ F+ +G  LASG  DG+V+IWD+++G  +K  ++     +  V + P G+ +LA + ++T+ +W+  +   L  ++GH +S  C   +F+   GK I +GS+D
Sbjct:  188 GHTNYVFCCCFNPS-GTLIASGSFDETIRIWCARNGNTIFSIPGHEDPVSSVCFNRDGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSPNGKYILASNLNNTLKLWDYQKLRVLKEYTGHENSKYCVAANFSVTGGKWIVSGSED 341

HSP 2 Score: 69.3218 bits (168), Expect = 3.365e-11
Identity = 42/157 (26.75%), Postives = 76/157 (48.41%), Query Frame = 1

Query:  430 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            + H   +  +  SP D   + +G  D     WR++   +   + GH+  ++  ++S + +L+ S   D LV+++D SSG    TL+G    V    ++P G ++ +GS D T+ +W A     +    GH   V+   F  DG  + +GS D  +R+
Sbjct:  104 NAHKKSISGIKFSP-DGRYMGSGSADCSIKIWRMDFV-YEKTLMGHRLGINEFSWSSDSKLIVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGTLIASGSFDETIRIWCARNGNTIFSIPGHEDPVSSVCFNRDGAYLASGSYDGIVRI 258

[Close]

BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: TG125_CAEBR (WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.842e-17
Identity = 49/160 (30.63%), Postives = 89/160 (55.62%), Query Frame = 1

Query:  433 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGN-LKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDDATLRV 900
            GH++ V+    +P  ++LV +G  D+    W +  G     +  H D VS ++F+ +G L+ SG  DGLV+IWDT++G  +K  ++     V +V + P G+ +L+ + D+T+ +W+  +   L  + GH ++  C   +F+   GK I +GS+D  + V
Sbjct:  161 GHTNYVFCCNFNP-QSSLVVSGSFDESVRIWDVRTGMCVKTLPAHSDPVSAVSFNRDGSLITSGSYDGLVRIWDTANGQCVKTLVDDENPPVAFVKFSPNGKYILSSNLDNTLKLWDFGKGKTLKQYQGHENNKYCIFANFSVTGGKWIISGSEDCKIYV 319

[Close]

BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.104e-17
Identity = 50/161 (31.06%), Postives = 84/161 (52.17%), Query Frame = 1

Query:  415 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGN-LKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDD 885
            S     GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS + F+ +G L+ S   DGL +IWDT+SG  LK  ++     V +V + P G+ +LA + D+T+ +W+  +   L  ++GH +   C   +F+   GK I +GS+D
Sbjct:  148 SLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 307

HSP 2 Score: 80.1073 bits (196), Expect = 1.907e-14
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = 1

Query:  556 IQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            + GH  +VS + FS  G+ LAS   D L++IW    G  + T+ G   G+  V+W    R++++GS+D T+ +W       L    GH + V C +F P    I +GS D ++R+
Sbjct:   68 LAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 182

HSP 3 Score: 80.1073 bits (196), Expect = 1.907e-14
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 1

Query:  430 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            +GH+  V +V  SP    L A+   D     W    G +   I GHK  +S++A+S + +LL SG  D  +++W+ S+G    TL+G    V   +++P+  ++++GS D +V +W+      L     H   V+   F  DG  I + S D   R+
Sbjct:   69 AGHTKAVSAVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 224

[Close]

BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: WDR69_XENTR (WD repeat-containing protein 69 OS=Xenopus tropicalis GN=wdr69 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.104e-17
Identity = 49/160 (30.63%), Postives = 74/160 (46.25%), Query Frame = 1

Query:  421 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            H   GH  E+ S   +  D +L+AT   D     W    G   + + GH+D V ++ F   GQL+A+   DG  +++  SS      LEG  G +  + ++ +G  +L  S D T  +WN      L +  GH   +    F  +G TI TGS D T R+
Sbjct:  255 HTLIGHRGEISSAQFN-WDCSLIATASMDKSCKLWDSLNGKCVATLTGHEDEVLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRILTASSDKTSRLWNPHTGECLQVLKGHTDEIFSCAFNYEGNTIITGSKDNTCRI 413

HSP 2 Score: 82.8037 bits (203), Expect = 2.941e-15
Identity = 47/160 (29.38%), Postives = 75/160 (46.88%), Query Frame = 1

Query:  421 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            H F GH+ E+  +A +P  +TL+ATG  D     W I  G+ A  + GH   + +L+F+  G  L +G  D  V +W+  SG    TL G  G +    ++    ++   S D +  +W++     +   +GH   V    F   G+ + T S D T RV
Sbjct:  171 HTFRGHTAEIVCLAFNP-QSTLIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATASMDKSCKLWDSLNGKCVATLTGHEDEVLDVTFDSTGQLVATASADGTARV 329

HSP 3 Score: 78.5666 bits (192), Expect = 5.547e-14
Identity = 43/163 (26.38%), Postives = 72/163 (44.17%), Query Frame = 1

Query:  412 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            +  H   GH + VY++  +      +ATG  D     W    G      +GH   +  LAF+ +  L+A+G +D   ++WD  SG    TL G    +  +S++  G  ++ GS D TV +W       ++   GH   ++   F  D   I T S D + ++
Sbjct:  125 EELHTLEGHRNVVYAIQFNNPYGDKIATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLAFNPQSTLIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATASMDKSCKL 287

HSP 4 Score: 73.9442 bits (180), Expect = 1.366e-12
Identity = 46/166 (27.71%), Postives = 76/166 (45.78%), Query Frame = 1

Query:  403 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            Q  +     SGH+ E+ S++ + T   L+ TG  D     W I  G     + GH+  +S+  F+ +  L+A+  +D   ++WD+ +G    TL G    V  V++   G++V   S D T  +++A     L    GH   ++   F   G  I T S D T R+
Sbjct:  207 QSGEEALTLSGHAAEIISLSFNTTGDRLI-TGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATASMDKSCKLWDSLNGKCVATLTGHEDEVLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRILTASSDKTSRL 371

HSP 5 Score: 69.3218 bits (168), Expect = 3.365e-11
Identity = 37/116 (31.90%), Postives = 59/116 (50.86%), Query Frame = 1

Query:  556 IQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSW-HPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            ++ H   ++N+AF+  G    +G  D   ++WDT+SG    TLEG    V  + + +P G  +  GS D T  +W+A+     + F GH + + C  F P    I TGS D T ++
Sbjct:   88 LRAHILPLTNVAFNKSGSSFITGSYDRTCKVWDTASGEELHTLEGHRNVVYAIQFNNPYGDKIATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLAFNPQSTLIATGSMDTTAKL 203

[Close]

BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: WDR69_MACFA (WD repeat-containing protein 69 OS=Macaca fascicularis GN=WDR69 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.361e-17
Identity = 48/160 (30.00%), Postives = 75/160 (46.88%), Query Frame = 1

Query:  421 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            +I  GH  E+ S A    D +L+ TG  D     W    G   + + GH D + +  F   G+L+A+   DG  +I+  ++      LEG  G +  +S++P+G  +L GS D T  +W+A     L +  GH   +    F   G  + TGS D T R+
Sbjct:  255 NILIGHCAEISS-ALFNWDCSLILTGSMDKTCMLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCTFNYKGNIVITGSKDNTCRI 413

HSP 2 Score: 86.6557 bits (213), Expect = 2.037e-16
Identity = 46/160 (28.75%), Postives = 78/160 (48.75%), Query Frame = 1

Query:  412 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 891
            +  +   GH + VY++A +       ATG  D     W +  G      +GH   +  L+F+ +  L+A+G +D   ++W+  +G   CTL G    +  +S++  G  ++ GS D TV +W+AD    +N+  GH + ++   F  D   I TGS D T
Sbjct:  125 EELNTLEGHRNVVYAIAFNNPYGDKTATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWNIQNGEEVCTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGGKVNILIGHCAEISSALFNWDCSLILTGSMDKT 284

[Close]

BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.361e-17
Identity = 49/155 (31.61%), Postives = 83/155 (53.55%), Query Frame = 1

Query:  433 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGN-LKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDD 885
            GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS + F+ +G L+ S   DGL +IWDT+SG  LK  ++     V +V + P G+ +LA + D+T+ +W+  +   L  ++GH +   C   +F+   GK I +GS+D
Sbjct:  127 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 280

HSP 2 Score: 82.8037 bits (203), Expect = 2.941e-15
Identity = 49/157 (31.21%), Postives = 75/157 (47.77%), Query Frame = 1

Query:  430 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            +GH+  V SV  SP    L A+   D     W    G +   I GHK  +S++A+S +  LL S   D  ++IWD SSG    TL+G    V   +++P+  ++++GS D +V +W+      L     H   V+   F  DG  I + S D   R+
Sbjct:   42 AGHTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197

HSP 3 Score: 77.7962 bits (190), Expect = 9.462e-14
Identity = 36/115 (31.30%), Postives = 61/115 (53.04%), Query Frame = 1

Query:  556 IQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            + GH  +VS++ FS  G+ LAS   D L++IW    G  + T+ G   G+  V+W     ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+
Sbjct:   41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155

[Close]

BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.361e-17
Identity = 49/155 (31.61%), Postives = 83/155 (53.55%), Query Frame = 1

Query:  433 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGN-LKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDD 885
            GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS + F+ +G L+ S   DGL +IWDT+SG  LK  ++     V +V + P G+ +LA + D+T+ +W+  +   L  ++GH +   C   +F+   GK I +GS+D
Sbjct:  127 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 280

HSP 2 Score: 82.8037 bits (203), Expect = 2.941e-15
Identity = 49/157 (31.21%), Postives = 75/157 (47.77%), Query Frame = 1

Query:  430 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            +GH+  V SV  SP    L A+   D     W    G +   I GHK  +S++A+S +  LL S   D  ++IWD SSG    TL+G    V   +++P+  ++++GS D +V +W+      L     H   V+   F  DG  I + S D   R+
Sbjct:   42 AGHTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197

HSP 3 Score: 77.7962 bits (190), Expect = 9.462e-14
Identity = 36/115 (31.30%), Postives = 61/115 (53.04%), Query Frame = 1

Query:  556 IQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            + GH  +VS++ FS  G+ LAS   D L++IW    G  + T+ G   G+  V+W     ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+
Sbjct:   41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155

[Close]

BLAST of FC878379 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.361e-17
Identity = 49/155 (31.61%), Postives = 83/155 (53.55%), Query Frame = 1

Query:  433 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGN-LKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC--GDFT-PDGKTICTGSDD 885
            GHS+ V+    +P  + L+ +G  D+    W +  G     +  H D VS + F+ +G L+ S   DGL +IWDT+SG  LK  ++     V +V + P G+ +LA + D+T+ +W+  +   L  ++GH +   C   +F+   GK I +GS+D
Sbjct:  127 GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 280

HSP 2 Score: 82.8037 bits (203), Expect = 2.941e-15
Identity = 49/157 (31.21%), Postives = 75/157 (47.77%), Query Frame = 1

Query:  430 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            +GH+  V SV  SP    L A+   D     W    G +   I GHK  +S++A+S +  LL S   D  ++IWD SSG    TL+G    V   +++P+  ++++GS D +V +W+      L     H   V+   F  DG  I + S D   R+
Sbjct:   42 AGHTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197

HSP 3 Score: 77.7962 bits (190), Expect = 9.462e-14
Identity = 36/115 (31.30%), Postives = 61/115 (53.04%), Query Frame = 1

Query:  556 IQGHKDSVSNLAFSMEGQLLASGGLDGLVQIWDTSSGNLKCTLEGPGGGVEWVSWHPRGRIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 900
            + GH  +VS++ FS  G+ LAS   D L++IW    G  + T+ G   G+  V+W     ++++ S+D T+ +W+      L    GH + V C +F P    I +GS D ++R+
Sbjct:   41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155

The following BLAST results are available for this feature:

BLAST of FC878379 vs. ExPASy Swiss-Prot

BLAST of FC878379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243


Match Name	E-value	Identity	Description
TUP1_DICDI	3.712e-18	34.32	General transcriptional corepressor tupA OS=Dictyo...	[more]
WDR69_DANRE	4.848e-18	32.50	WD repeat-containing protein 69 OS=Danio rerio GN=...	[more]
YZLL_CAEEL	1.080e-17	32.26	Uncharacterized WD repeat-containing protein K04G1...	[more]
TG125_CAEBR	1.842e-17	30.63	WD repeat-containing protein tag-125 OS=Caenorhabd...	[more]
WDS_DROME	4.104e-17	31.06	Protein will die slowly OS=Drosophila melanogaster...	[more]
WDR69_XENTR	4.104e-17	30.63	WD repeat-containing protein 69 OS=Xenopus tropica...	[more]
WDR69_MACFA	5.361e-17	30.00	WD repeat-containing protein 69 OS=Macaca fascicul...	[more]
WDR5_RAT	5.361e-17	31.61	WD repeat-containing protein 5 OS=Rattus norvegicu...	[more]
WDR5_MOUSE	5.361e-17	31.61	WD repeat-containing protein 5 OS=Mus musculus GN=...	[more]
WDR5_HUMAN	5.361e-17	31.61	WD repeat-containing protein 5 OS=Homo sapiens GN=...	[more]

Pages

Properties


Property Name	Value
Genbank description	IC0AAA99CG06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CG06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC878379 ID=FC878379; Name=FC878379; organism=Citrus clementina; type=EST; length=900bp
CTGTTCTCAAATCCCTAAATTCCAATTTACAACTCATCTCTCTCCCTCGC
CTCTCTGCCTCCCGTTTCTCCCTCTCCTCACGGCGCAGAACCTCAGCTCA
GCCCCTCTCGGTTTCTTCCTCGTAAGCGTCTCTCCCTCGCGTCAGCACAG
CCCCTCCCCTCAGTCACGGTGACGCCGTCGTTGGCCCCTCACACACGGTC
ATCTTTGGTGCTGCAGCCTACAGGAAACACAATTAATTAACAGAACAAGA
TGAACAATCCAATCCACAACGAAGTCGAAGACGACCAAGGGGAGGTTTTT
CTCGATGAATCTGACATTATCCATGAGGTTACAGTAGATGATGAAGATCT
TCCTGATGTCGATGATGATGATGATCCAGGTTCAGATGCTGAAAACACTG
AACAACCTGATGATTCAACACACATATTCTCTGGTCATTCTGATGAAGTT
TATTCTGTTGCATGCAGCCCGACGGACGCTACATTAGTGGCAACTGGAGG
TGGAGATGACAAAGGGTTTTTTTGGAGGATTAATCAAGGAGATTGGGCTT
CTGAGATCCAAGGTCACAAGGATTCGGTTTCTAATTTGGCTTTTAGTATG
GAAGGACAGCTCCTTGCTTCGGGAGGGTTAGATGGACTTGTTCAAATCTG
GGATACATCGTCAGGAAATCTCAAATGCACTCTTGAAGGTCCTGGAGGAG
GCGTCGAGTGGGTCAGTTGGCATCCAAGAGGACGTATAGTGTTGGCTGGT
TCTGAGGATTCCACTGTCTGGATGTGGAATGCTGATAGAGCTGCCTATCT
TAATATGTTTTCAGGTCATGGTAGTAGCGTGACTTGCGGTGATTTTACCC
CTGATGGTAAAACAATCTGCACTGGTTCAGATGATGCGACTTTGAGGGTA