FC878382

Overview
NameFC878382
Unique NameFC878382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5819 contig Ccv1_Contig5819:152..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVBL_MOUSE (Acetolactate synthase-like protein OS=Mus musculus GN=Ilvbl PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.700e-21
Identity = 71/299 (23.75%), Postives = 119/299 (39.80%), Query Frame = 2
Query:   41 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVN---------------------------SDIDKAVSLLKEAKKPLIVFGKGAAY-ARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLXXXXXRSLAIGQCDVALVVGA 853
            G    A  L   G   +F +VG  ++ L     +LG+R +   +E            LTG  G+    +GPG  + +  + N  +   P++++ G+       RG  Q +DQ+   +P  KF    + + ++   +   +  A SG PG  +++LP DVL+    V             +  V    + N                             + + V +L  AK+PL+V G  A        +L+  VE+ G+P     M +GLL   HPL     RS A+ + DV ++ GA
Sbjct:   54 GGESVAAVLRAHGVRFVFTLVGGHISPLLVACEKLGIRVVDTRHEVTAVFAADAVARLTGTVGVAAVTAGPGLTNTVTAVKNAQVAQSPVLLLGGAASTLLQKRGALQAIDQMSLFRPLCKFCASVRRVRDIVPTLRTAIAAAQSGTPGPVFVELPLDVLYPYFMVEKEMIPTKLPNSLMGRVVVWYLQNCLANLFVGAWEPRPEGPLPLDIPQASPQQVQRCVEILSRAKRPLLVLGSQALLPPTPANKLRAAVETLGVPCFLGGMSRGLLGRNHPLHIRQNRSAALKKADVVVLAGA 352          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: GCL_ECOLI (Glyoxylate carboligase OS=Escherichia coli (strain K12) GN=gcl PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 74/240 (30.83%), Postives = 105/240 (43.75%), Query Frame = 2
Query:   77 GATHMFGVVGIPVTSLAN-LAVQLGVRFI-AFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL 790
            G T  FGV G  +    + +    G+R I A H E              G  G+ L  SGP     +  L +   ++ PI+ I+G   +    + DFQ +D     KP SK AV  ++   VP+ + Q      SGRPG   +DLP DV    I                  V +       I+KAV +L +A++P+IV G G   A A   L++  E T +P +PT MG G +PD H L
Sbjct:   18 GITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAEIEFDPDMYEPL-------PVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLMGWGCIPDDHEL 250          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: GCL_ECO57 (Glyoxylate carboligase OS=Escherichia coli O157:H7 GN=gcl PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 74/240 (30.83%), Postives = 105/240 (43.75%), Query Frame = 2
Query:   77 GATHMFGVVGIPVTSLAN-LAVQLGVRFI-AFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL 790
            G T  FGV G  +    + +    G+R I A H E              G  G+ L  SGP     +  L +   ++ PI+ I+G   +    + DFQ +D     KP SK AV  ++   VP+ + Q      SGRPG   +DLP DV    I                  V +       I+KAV +L +A++P+IV G G   A A   L++  E T +P +PT MG G +PD H L
Sbjct:   18 GITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAEIEFDPDMYEPL-------PVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLMGWGCIPDDHEL 250          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB_MYCTU (Acetolactate synthase OS=Mycobacterium tuberculosis GN=ilvB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.655e-20
Identity = 66/252 (26.19%), Postives = 112/252 (44.44%), Query Frame = 2
Query:   32 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLAN-LAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTH 784
            Q+ G     +SL   G   +FG+ G  V  + + L     +R +   +EQ           +TG+ G+ +  SGPG  + +  L++  +++ P+V I+G   +   G   FQE D      P +K     +   ++P+ +A+    A SGRPG   +D+P DVL    +                        +  + +A  L+  A+KP++  G G     A  +L++L E TGIP + T M +G  PD+H
Sbjct:   37 QLTGAQAVIRSLEELGVDVIFGIPGGAVLPVYDPLFDSKKLRHVLVRHEQGAGHAASGYAHVTGRVGVCMATSGPGATNLVTPLADAQMDSIPVVAITGQVGRGLIGTDAFQEADISGITMPITKHNFLVRSGDDIPRVLAEAFHIAASGRPGAVLVDIPKDVLQGQCTFSWPPRMELPGYKPNTKPH-----SRQVREAAKLIAAARKPVLYVGGGVIRGEATEQLRELAELTGIPVVTTLMARGAFPDSH 283          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB_MYCBO (Acetolactate synthase OS=Mycobacterium bovis GN=ilvB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.655e-20
Identity = 66/252 (26.19%), Postives = 112/252 (44.44%), Query Frame = 2
Query:   32 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLAN-LAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTH 784
            Q+ G     +SL   G   +FG+ G  V  + + L     +R +   +EQ           +TG+ G+ +  SGPG  + +  L++  +++ P+V I+G   +   G   FQE D      P +K     +   ++P+ +A+    A SGRPG   +D+P DVL    +                        +  + +A  L+  A+KP++  G G     A  +L++L E TGIP + T M +G  PD+H
Sbjct:   37 QLTGAQAVIRSLEELGVDVIFGIPGGAVLPVYDPLFDSKKLRHVLVRHEQGAGHAASGYAHVTGRVGVCMATSGPGATNLVTPLADAQMDSIPVVAITGQVGRGLIGTDAFQEADISGITMPITKHNFLVRSGDDIPRVLAEAFHIAASGRPGAVLVDIPKDVLQGQCTFSWPPRMELPGYKPNTKPH-----SRQVREAAKLIAAARKPVLYVGGGVIRGEATEQLRELAELTGIPVVTTLMARGAFPDSH 283          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB2_TOBAC (Acetolactate synthase 2, chloroplastic OS=Nicotiana tabacum GN=ALS SURB PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.814e-20
Identity = 71/282 (25.18%), Postives = 124/282 (43.97%), Query Frame = 2
Query:   41 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGV-RFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-------XXXXXRSLAIGQCDVALVVGARLN 862
            G+ +  ++L   G T +F   G     +     +  + R +   +EQ            TG PG+ +  SGPG  + ++GL++ ++++ PIV I+G   ++  G   FQE   VE  +  +K      D+ ++P+ V +    A SGRPG   +D+P D+  Q +                       ++   +++ V L+ E+KKP++  G G   +++  EL++ VE TGIP   T MG G  P    L             + A+   D+ L  G R +
Sbjct:   93 GSDVLVEALEREGVTDVFAYPGGASMEIHQALTRSSIIRNVLPRHEQGGVFAAEGYARATGFPGVCIATSGPGATNLVSGLADALLDSVPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVVREAFFLARSGRPGPVLIDVPKDIQQQLVIPDWDQPMRLPGYMSRLPKLPNEML---LEQIVRLISESKKPVLYVGGGC--SQSSEELRRFVELTGIPVASTLMGLGAFPTGDELSLSMLGMHGTVYANYAVDSSDLLLAFGVRFD 369          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB_SCHPO (Acetolactate synthase, mitochondrial OS=Schizosaccharomyces pombe GN=ilv1 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.072e-19
Identity = 73/271 (26.94%), Postives = 121/271 (44.65%), Query Frame = 2
Query:   86 HMFGVVGIPVTSLANLAVQLG-VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTIS--VXXXXXXXXXXXXXIETVTQGG-IVNSDIDKAVSLLKEAKKPLIVFGKGA-AYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-------XXXXXRSLAIGQCDVALVVGARLN 862
            H+FG  G  +  + +   +     FI   +EQ           +T KPG++L  SGPG  + +  +++ + +  P+V+ SG       G   FQE D V   +  +K+ V  KD+ ++P+ + +  E A SGRPG   +DLP DV    +   +              E + +G   V + ID+  +LLK AKKP+I  G G  A       L+K  E   IP   + +G G + +   L             ++A+ + D+ L +G R +
Sbjct:  104 HVFGYPGGAILPVFDAIYRSPHFEFILPRHEQAAGHAAQAYSRVTKKPGVVLVTSGPGATNVITPIADALADGTPLVVFSGQVATSAIGSDAFQEADMVGISRSCTKWNVMVKDVADLPRRIDEAFEIATSGRPGPVLVDLPKDVTASVLKEPIPILSSVPSMNRRMKEVLEEGSKNVTAKIDRVANLLKLAKKPVIFCGHGVLANPECPTLLRKFSERLQIPVTTSLLGLGAVDERSDLSLHMLGMHGSGYANMAMQEADLILALGVRFD 374          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB1_TOBAC (Acetolactate synthase 1, chloroplastic OS=Nicotiana tabacum GN=ALS SURA PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.072e-19
Identity = 70/282 (24.82%), Postives = 124/282 (43.97%), Query Frame = 2
Query:   41 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGV-RFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-------XXXXXRSLAIGQCDVALVVGARLN 862
            G+ +  ++L   G T +F   G     +     +  + R +   +EQ            TG PG+ +  SGPG  + ++GL++ ++++ PIV I+G   ++  G   FQE   VE  +  +K      D+ ++P+ V +    A SGRPG   +D+P D+  Q +                       ++   +++ V L+ E+KKP++  G G   +++  +L++ VE TGIP   T MG G  P    L             + A+   D+ L  G R +
Sbjct:   96 GSDVLVEALEREGVTDVFAYPGGASMEIHQALTRSSIIRNVLPRHEQGGVFAAEGYARATGFPGVCIATSGPGATNLVSGLADALLDSVPIVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVVREAFFLARSGRPGPILIDVPKDIQQQLVIPDWDQPMRLPGYMSRLPKLPNEML---LEQIVRLISESKKPVLYVGGGC--SQSSEDLRRFVELTGIPVASTLMGLGAFPTGDELSLSMLGMHGTVYANYAVDSSDLLLAFGVRFD 372          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVBL_DANRE (Acetolactate synthase-like protein OS=Danio rerio GN=ilvbl PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.829e-19
Identity = 70/298 (23.49%), Postives = 118/298 (39.60%), Query Frame = 2
Query:   41 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVN---------------------------SDIDKAVSLLKEAKKPLIVFGKGAAYARAEG-ELKKLVESTGIPFLPTPMGKGLLPDTHPLXXXXXRSLAIGQCDVALVVG 850
            G    A+ L   G   +F +VG  ++ +     +LG+R +   +E            L+G  G+    +GPG  + +  + N  +   P+++I G+      GRG  Q++DQ+   KP  KF    + + E+   V + L  A SG PG  +++ P D L+    V             +  +    + N                             + + V L+  AKKP+I+ G  A        +++K +ES GIP     M +GLL    PL     R  A+   D+ L+ G
Sbjct:   43 GGESVAEVLRSHGVKFVFTLVGGHISPILVACEKLGIRIVDTRHEATAVFAADAVARLSGTVGVAAVTAGPGLTNTVTAVKNAQMAESPLLLIGGAAATLLQGRGALQDIDQMSLFKPLCKFCASVRTVREIVPTVRKALAIAQSGTPGPVFIEFPIDTLYPYHVVEKEFAPKNTPKGLMGKIIAWYLKNHLSNLFAGAWESRDLSPLPVHIPHATDDQVQRCVELVSRAKKPVILLGSQATLPPTPADDIRKALESLGIPCFLGGMSRGLLGKNSPLHIRQNRRDALKDADLVLLAG 340          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB3_BRANA (Acetolactate synthase 3, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.829e-19
Identity = 62/209 (29.67%), Postives = 101/209 (48.33%), Query Frame = 2
Query:  149 VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLP 775
            +R +   +EQ            +GKPGI +  SGPG  + ++GL++ M+++ P+V I+G   ++  G   FQE   VE  +  +K      D+ ++P+ V +    A SGRPG   +D+P D+  Q                 +  + Q   V S + + V L+ E+K+P++  G G+    +  EL + VE TGIP   T MG G  P
Sbjct:  118 IRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADAMLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVDDIPRIVQEAFFLATSGRPGPVLVDVPKDIQQQL--AIPNWDQPMRLPGYMSRLPQPPEV-SQLGQIVRLISESKRPVLYVGGGS--LNSSEELGRFVELTGIPVASTLMGLGSYP 321          
The following BLAST results are available for this feature:
BLAST of FC878382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
ILVBL_MOUSE9.700e-2123.75Acetolactate synthase-like protein OS=Mus musculus... [more]
GCL_ECOLI1.267e-2030.83Glyoxylate carboligase OS=Escherichia coli (strain... [more]
GCL_ECO571.267e-2030.83Glyoxylate carboligase OS=Escherichia coli O157:H7... [more]
ILVB_MYCTU1.655e-2026.19Acetolactate synthase OS=Mycobacterium tuberculosi... [more]
ILVB_MYCBO1.655e-2026.19Acetolactate synthase OS=Mycobacterium bovis GN=il... [more]
ILVB2_TOBAC4.814e-2025.18Acetolactate synthase 2, chloroplastic OS=Nicotian... [more]
ILVB_SCHPO1.072e-1926.94Acetolactate synthase, mitochondrial OS=Schizosacc... [more]
ILVB1_TOBAC1.072e-1924.82Acetolactate synthase 1, chloroplastic OS=Nicotian... [more]
ILVBL_DANRE1.829e-1923.49Acetolactate synthase-like protein OS=Danio rerio ... [more]
ILVB3_BRANA1.829e-1929.67Acetolactate synthase 3, chloroplastic OS=Brassica... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CG07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878382 ID=FC878382; Name=FC878382; organism=Citrus clementina; type=EST; length=864bp
ATCATCTCCATTGCAAAATTCCCAAAATGCCCAGATCGACGGCAACACCC
TGGCGGCCAAATCCTTGTCACTATTCGGTGCCACCCACATGTTCGGCGTG
GTGGGCATTCCCGTTACTTCCTTAGCGAACCTGGCCGTCCAGCTCGGCGT
CCGGTTCATCGCCTTCCACAATGAGCAGTCCGCTGGCTACGCCGCCTCAG
CCTACGGATACCTGACTGGAAAACCCGGCATTCTGTTAACTGTTTCCGGT
CCGGGTTGCGTGCACGGTCTGGCTGGTCTCTCGAATGGGATGATTAACAC
CTGGCCAATCGTCATGATATCCGGCTCCTGCGATCAGAAAGATTTTGGCC
GCGGCGATTTTCAAGAACTCGACCAAGTGGAAGCCGTCAAGCCTTTTTCG
AAATTTGCTGTAAAAGCGAAGGACATTACGGAAGTTCCCAAGTGTGTCGC
TCAGGTTCTTGAACGGGCTGTTTCGGGGCGGCCCGGCGGGTGTTATTTGG
ATCTACCCACTGATGTTTTACATCAAACGATATCGGTATCTGAAGCGGAG
AAGCTTCTGAAGGAAGCGGAGAGTGCCATAGAAACGGTGACGCAAGGGGG
GATTGTGAATTCTGATATCGATAAAGCGGTGTCTTTGCTTAAAGAAGCAA
AGAAGCCGTTGATTGTGTTTGGGAAAGGCGCAGCTTATGCGCGAGCTGAG
GGTGAATTGAAGAAATTAGTTGAAAGTACTGGGATTCCATTTTTGCCTAC
TCCAATGGGTAAAGGTCTGTTGCCTGATACCCATCCGCTTGCTGCTGCCG
CTGCGAGGTCATTAGCCATAGGTCAATGTGATGTTGCGCTTGTTGTTGGT
GCGAGGCTTAATTG
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